ID: uc010ozy.1_intron_19_0_chr1_147599322_r.3p
GENE: (4)
chr1:147599272-147599521-


(1)
B-CELL
(4)
BRAIN
(35)
BREAST
(28)
CELL-LINE
(6)
CERVIX
(4)
FIBROBLAST
(5)
HEART
(4)
HELA
(3)
LIVER
(1)
OTHER
(34)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GAGCAGTGCTTTCAGCTCTGAGTTGAGGCACCTCGAACCTTGTTTTTGTGGTGAAGGATCCTAAAGTGCTGTGGGGAGTGATCACATTTTTCACAACAGTAAGTTAAGAATTTCAGTTACTGACATCCCTCAGTCCTGATTAAACCTATTTGATTTCACCAGTTTTTAACCCATCATATGTTTGGGTTTCTTCTCCCCAGTCCCTGACTCCACCTCTTCTGCCACAAACGTCAGCATGGTGGTATCAGCC
......................................................................................................((((((((((((((..(((((......))))).))))...........((....))..))))))))))............((((.........))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029126(GSM416755)
143B. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
GSM532886(GSM532886)
G850T. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
TAX577740(Rovira)
total RNA. (breast)
SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
......................................................................................TTTTTCACAACAGTAAG...................................................................................................................................................17861.7561.7533.3810.255.754.00-0.38--2.50------1.00-0.120.88--0.12-----------0.250.25---------0.120.25---------0.120.120.12---0.250.250.25-------------------------------------0.120.12--0.12-0.120.120.120.120.12---0.12-0.120.12----------
.....................................................................................ATTTTTCACAACAGTAAG...................................................................................................................................................18736.8636.869.570.572.002.713.431.710.14-0.71----1.57-0.861.290.140.29-1.14-----------0.570.290.29--0.430.290.430.290.430.430.430.140.140.14-0.290.290.290.290.290.140.290.140.140.14-0.14------0.140.140.140.140.140.140.140.140.140.140.140.140.140.140.140.140.140.140.14-0.140.14--0.140.14-0.14-0.140.140.14-0.14-----------------------------
......................................................................................TTTTTCACAACAGTAAGATC................................................................................................................................................2083.0061.75---------3.00-----------------------------------------------------------------------------------------------------------------------
.............AGCTCTGAGTTGAGGCACCTAAA......................................................................................................................................................................................................................233.000.00----------3.00----------------------------------------------------------------------------------------------------------------------
....................................................................................CATTTTTCACAACAGTAAG...................................................................................................................................................1972.292.290.86---0.290.29-------0.43------------------------0.14-0.14--------------------------------------------0.14-------------------------------------------
.....................................................................................ATTTTTCACAACAGTAAGATG................................................................................................................................................2172.0036.86--2.00------------------------------------------------------------------------------------------------------------------------------
.................................................................................TCACATTTTTCACAACA........................................................................................................................................................1771.571.57-0.860.14--------------------------------0.29-----------------0.14------0.14--------------------------------------------------------------------
......................................................................................TTTTTCACAACAGTAGG...................................................................................................................................................171.000.00-1.00-------------------------------------------------------------------------------------------------------------------------------
........CTTTCAGCTCTGAGTTA.................................................................................................................................................................................................................................171.000.00-------------------------1.00-------------------------------------------------------------------------------------------------------
.....................................................................................ATTTTTCACAACAGTGAG...................................................................................................................................................181.000.00-----------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGTTTGGGTTTCTTCTCCCCTT..................................................221.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------
.............AGCTCTGAGTTGAGGCACCTCGAATA...................................................................................................................................................................................................................261.000.00-----------1.00---------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................TCTTCTCCCCAGTCCCTGACTCCACCTA..................................281.000.00------1.00--------------------------------------------------------------------------------------------------------------------------
...............................................................AAGTGCTGTGGGGAGTGTTCA......................................................................................................................................................................211.000.00------------------------------1.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................AACGTCAGCATGGTGGGAT.....191.000.00-------------------1.00-------------------------------------------------------------------------------------------------------------
...............................................................AAGTGCTGTGGGGAGTGATCACATTTCAC..............................................................................................................................................................291.000.00--------------1.00------------------------------------------------------------------------------------------------------------------
...............................................................AAGTGCTGTGGGGAGTGACCAC.....................................................................................................................................................................221.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
...............CTCTGAGTTGAGGCAAAGG........................................................................................................................................................................................................................191.000.00--------------------------1.00------------------------------------------------------------------------------------------------------
..................................................................TGCTGTGGGGAGTGATCACATTTCAC..............................................................................................................................................................261.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................TAAAGTGCTGTGGGGAAGGT.........................................................................................................................................................................201.000.00----------------------------1.00----------------------------------------------------------------------------------------------------
..............................................TGTGGTGAAGGATCCTAAAGTGCTGTGGTG..............................................................................................................................................................................301.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------
................................................................AGTGCTGTGGGGAGTGATCACATTTCAC..............................................................................................................................................................281.000.00--------------1.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ACAAACGTCAGCATGGTGATA......211.000.00-----------1.00---------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CACAAACGTCAGCATGGCGG........201.000.00----------------------1.00----------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................ATGTTTGGGTTTCTTCTCC......................................................1990.440.44------------------------------------0.44--------------------------------------------------------------------------------------------
..................................................................................CACATTTTTCACAACA........................................................................................................................................................1690.330.33----------------------------------------------0.11--------------------------------------------------------------------------0.11----0.11--
.............................................................TAAAGTGCTGTGGGGAGTGATCACATT..................................................................................................................................................................2790.330.33-----0.220.11--------------------------------------------------------------------------------------------------------------------------
...........TCAGCTCTGAGTTGAGGCACCTCG.......................................................................................................................................................................................................................2470.290.29----------------------------------------------------------0.14---------------------------------0.14------------------------------------
.....................................................................................ATTTTTCACAACAGTAA....................................................................................................................................................1770.290.29-0.29-------------------------------------------------------------------------------------------------------------------------------
..................................................................................CACATTTTTCACAACAGTAAG...................................................................................................................................................2170.290.29--------------------------------------------0.14-----------------------------------------------------0.14------------------------------
...................................................TGAAGGATCCTAAAGTGCTGTGGGG..............................................................................................................................................................................2590.220.22------0.11----------------------------0.11---------------------------------------------------------------------------------------------
.....................................................AAGGATCCTAAAGTGCTGTGGGGA.............................................................................................................................................................................2490.220.22-----0.22---------------------------------------------------------------------------------------------------------------------------
..............................................................AAAGTGCTGTGGGGAGTGATCACA....................................................................................................................................................................2490.220.22-----0.22---------------------------------------------------------------------------------------------------------------------------
............................CACCTCGAACCTTGTTTTTGTGG.......................................................................................................................................................................................................2390.220.22-----0.22---------------------------------------------------------------------------------------------------------------------------
.........................................................ATCCTAAAGTGCTGTGGGGA.............................................................................................................................................................................2090.220.22-----------------------------------------------------------------0.22---------------------------------------------------------------
...........................................................................................CACAACAGTAAGTTAAGAATTTCAGTT....................................................................................................................................2750.200.20-----------------------------------------------0.20---------------------------------------------------------------------------------
............CAGCTCTGAGTTGAGGCACCTCGAAC....................................................................................................................................................................................................................2670.140.14-------------------0.14-------------------------------------------------------------------------------------------------------------
..........TTCAGCTCTGAGTTGAGGCACCTCGAACCT..................................................................................................................................................................................................................3070.140.14-----------0.14---------------------------------------------------------------------------------------------------------------------
..............GCTCTGAGTTGAGGCACCTCGAA.....................................................................................................................................................................................................................2370.140.14-----------0.14---------------------------------------------------------------------------------------------------------------------
............CAGCTCTGAGTTGAGGCACCTCGAACC...................................................................................................................................................................................................................2770.140.14-----------0.14---------------------------------------------------------------------------------------------------------------------
................................................................................ATCACATTTTTCACAACA........................................................................................................................................................1870.140.14----------------------------------------------------------------------------------------0.14----------------------------------------
................TCTGAGTTGAGGCACCTCG.......................................................................................................................................................................................................................1970.140.14----------------------------------------------------------------------------------------------0.14----------------------------------
......................TTGAGGCACCTCGAACCTTGTTTTTGTGGTG.....................................................................................................................................................................................................3170.140.14----------------------------------------------------------------------------------------------------0.14----------------------------
..............................................................................TGATCACATTTTTCACAACAGTAAG...................................................................................................................................................2570.140.14-----------------------------------------------------------------------------------------0.14---------------------------------------
.........TTTCAGCTCTGAGTTGAGGC.............................................................................................................................................................................................................................2080.120.12--------------------------------------------------------------------------------------------------------------------0.12------------
.............................................................................................................................................................................................CTTCTCCCCAGTCCCTGACTCC.......................................2280.120.12-----------------------------------------------0.12---------------------------------------------------------------------------------
...........TCAGCTCTGAGTTGAGGC.............................................................................................................................................................................................................................1880.120.12-----------------------------------0.12---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CTGACTCCACCTCTTCTGCCA..........................2180.120.12-----------0.12---------------------------------------------------------------------------------------------------------------------
...CAGTGCTTTCAGCTCTGAGTTG.................................................................................................................................................................................................................................2280.120.12------------------------------------------------------------------------------------------------------------------0.12--------------
....AGTGCTTTCAGCTCTGAGTTGA................................................................................................................................................................................................................................2280.120.12--------------------------------0.12------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................CCCCAGTCCCTGACTCCACCTCTTCT..............................2680.120.12----------------------------------------------0.12----------------------------------------------------------------------------------
............................................................................................................................................................................................................TGACTCCACCTCTTCTGCCACA........................2280.120.12----------------------------------------------------------------------------------------------------------------0.12----------------
........CTTTCAGCTCTGAGTTGAGGC.............................................................................................................................................................................................................................2180.120.12-------------------------------------------------------------------------------------------------------0.12-------------------------
...............................................................................................................................................................................................TCTCCCCAGTCCCTGACTCC.......................................2080.120.12----------------------------------------------------------------------------------------------------------0.12----------------------
..........TTCAGCTCTGAGTTGAGGCA............................................................................................................................................................................................................................2080.120.12-----------------------------------------------------------------------------------------------------------------0.12---------------
.....GTGCTTTCAGCTCTGAGTTGA................................................................................................................................................................................................................................2180.120.12-----0.12---------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................TCCCCAGTCCCTGACTCCACCTCTTC...............................2680.120.12--------------------------------------------------------------------------------------------------------0.12------------------------
........................................................................................................................................................................................................TCCCTGACTCCACCTCTTCTGCC...........................2380.120.12-------0.12-------------------------------------------------------------------------------------------------------------------------
..........................................................TCCTAAAGTGCTGTGGGG..............................................................................................................................................................................1890.110.11-----------------------------------------------------------------------------------------------------------------------0.11---------
..........TTCAGCTCTGAGTTGAGG..............................................................................................................................................................................................................................1890.110.11----------------------------------------------------------0.11----------------------------------------------------------------------
...........................................................CCTAAAGTGCTGTGGGGAGTGATC.......................................................................................................................................................................2490.110.11------------------------------------------------------------0.11--------------------------------------------------------------------
...........................................................................................................................................................................................................CTGACTCCACCTCTTCT..............................1790.110.11----------------------0.11----------------------------------------------------------------------------------------------------------
.............AGCTCTGAGTTGAGGCAC...........................................................................................................................................................................................................................1890.110.11---------------------------------------------------------------------------------------------------------------------------0.11-----
............................CACCTCGAACCTTGTTTTT...........................................................................................................................................................................................................1990.110.11----------------------------------------------------------------0.11----------------------------------------------------------------
.........................AGGCACCTCGAACCTTGTTTT............................................................................................................................................................................................................2190.110.11-----------0.11---------------------------------------------------------------------------------------------------------------------
..............GCTCTGAGTTGAGGCACC..........................................................................................................................................................................................................................1890.110.11-----------------------------------------------------------0.11---------------------------------------------------------------------
......................................................AGGATCCTAAAGTGCTGTGGGGAGTGATCAC.....................................................................................................................................................................3190.110.11-------0.11-------------------------------------------------------------------------------------------------------------------------
...........................................................CCTAAAGTGCTGTGGGGAGTGAT........................................................................................................................................................................2390.110.11-----------------------------------------------------------------------------------------------------------------------------0.11---
............................................................................................................AATTTCAGTTACTGACATCCCTCAGT....................................................................................................................2690.110.11----------------------------------------------------------------------------------------------------------------------------0.11----
.............................................................TAAAGTGCTGTGGGGAGTGATCACA....................................................................................................................................................................2590.110.11--------------------------------------------------------------------------------------------------------------------------------0.11
................................................TGGTGAAGGATCCTAAAGTGCTGTGGGGAGT...........................................................................................................................................................................3190.110.11----------------------------------------------------------------0.11----------------------------------------------------------------
..............................................................AAAGTGCTGTGGGGAGTGATCACATTT.................................................................................................................................................................2790.110.11------------------------------------------------------------------------------------------------------------------------0.11--------
...........................................................CCTAAAGTGCTGTGGGGA.............................................................................................................................................................................1890.110.11-------------------------------------------------------------------------------------------------------------------------------0.11-
.................................CGAACCTTGTTTTTGTGGTGAAGGA................................................................................................................................................................................................2590.110.11--------------------------------------------------------------------------------------------------------------------------0.11------

Antisense strand
GAGCAGTGCTTTCAGCTCTGAGTTGAGGCACCTCGAACCTTGTTTTTGTGGTGAAGGATCCTAAAGTGCTGTGGGGAGTGATCACATTTTTCACAACAGTAAGTTAAGAATTTCAGTTACTGACATCCCTCAGTCCTGATTAAACCTATTTGATTTCACCAGTTTTTAACCCATCATATGTTTGGGTTTCTTCTCCCCAGTCCCTGACTCCACCTCTTCTGCCACAAACGTCAGCATGGTGGTATCAGCC
......................................................................................................((((((((((((((..(((((......))))).))))...........((....))..))))))))))............((((.........))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029126(GSM416755)
143B. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
GSM532886(GSM532886)
G850T. (cervix)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040024(GSM532909)
G613N. (cervix)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)
SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
TAX577740(Rovira)
total RNA. (breast)
SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
....................................................................................................................................................................................................................CCTCTTCTGCCACAAACGTCAGCATGGA.......... 281.000.00------1.00--------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................CTTCTCCCCAGTCCCTGACTCCAGCTG.................................. 271.000.00---------------------1.00-----------------------------------------------------------------------------------------------------------
.............................................................TAAAGTGCTGTGGGGAGTCAG........................................................................................................................................................................ 211.000.00---------------------------1.00-----------------------------------------------------------------------------------------------------
..............................................................AAAGTGCTGTGGGGAGTCC......................................................................................................................................................................... 191.000.00------------1.00--------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................TCTTCTCCCCAGTCCCTTT........................................... 191.000.00-------------------------------1.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CCTCTTCTGCCACAAACGTCAGCAGA............ 261.000.00------1.00--------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GACTCCACCTCTTCTTTCA.......................... 191.000.00------------------------1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................CTTCTCCCCAGTCCCTCTG.......................................... 191.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------
.............................................................TAAAGTGCTGTGGGGAGTCA......................................................................................................................................................................... 201.000.00------------1.00--------------------------------------------------------------------------------------------------------------------