ID: uc010otp.1_intron_0_0_chr1_94884145_f.3p
GENE: (1)
chr1:94930131-94930380+


(3)
BRAIN 		(1)
BREAST 		(4)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(6)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
CTTATTCAGTTTTTAGATAACATTGTTTTCTCAAAAACATGTTTGAATATGAGGAGCAGTGTAAGTATGCAAGTCTGTGTTTTGTAAATTCAGTTTTTATCTTGATAGCTGTTTATGTTGACTTAGATGAAACATGGTTCTTTAATTTTATGATATGTTTGTTATAGCTATCTTAAAAGGGCTTCTTTTTTTTAATGCAGAAAGAGGGGAAAAAGGAGCGAGCTGTGGTGGACAAGGTGTTTTTCTCAAG
.......................................................................................................((((((...(((((((...........)))))))...........(((((((....)))))))))))))..............................................................................
................................................................................................97...........................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532879(GSM532879)
G659N. (cervix)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................TGATATGTTTGTTATATTAG................................................................................20107.000.00104.00---2.00--------------1.00-------
......................................................................................................................................................TGATATGTTTGTTATATCAG................................................................................209.000.009.00--------------------------
......................................................................................................................................................TGATATGTTTGTTATATTA.................................................................................198.000.007.00---1.00----------------------
......................................................................................................................................................TGATATGTTTGTTATATTAT................................................................................204.000.004.00--------------------------
....................................................................................................................................................................................................................AAGGAGCGAGCTGTGGTGGACAAGGT............2613.003.00-2.00-1.00-----------------------
......................................................................................................................................................TGATATGTTTGTTATATTAC................................................................................203.000.003.00--------------------------
.....................................................................................................TTGATAGCTGTTTATGTTGA.................................................................................................................................2013.003.00--3.00------------------------
......................................................................................................................................................................................................AGAAAGAGGGGAAAAAGGAGCG..............................2212.002.00--2.00------------------------
......CAGTTTTTAGATAACCTCA.................................................................................................................................................................................................................................192.000.00-----2.00---------------------
..................................................................................................................................................................................................................AAAAGGAGCGAGCTGTGGTGGA..................2212.002.00--------2.00------------------
..................................................................................................................................................................................................................AAAAGGAGCGAGCTGTGGTGGATGTT..............2612.002.00-2.00-------------------------
......................................................................................................................................................TGATATGTTTGTTATATGAG................................................................................202.000.002.00--------------------------
.....................................................................................................................................................................................................................................GGACAAGGTGTTTTTCTC...1811.001.00-----------------------1.00---
..............................................................................................................................................................................................................................CTGTGGTGGACAAGGTGTTTTTCT....2411.001.00-------1.00-------------------
..................................................................................................................................................................................................................AAAAGGAGCGAGCTGTGGTG....................2011.001.00-------------1.00-------------
...................................................................................................................................................................................................................AAAGGAGCGAGCTGTGGTGGA..................2111.001.00--------------------------1.00
......................................................................................................................................................TGATATGTTTGTTATATTAA................................................................................201.000.001.00--------------------------
........................................................................................................................................................................................................AAAGAGGGGAAAAAGGAGCGAGCTGTGG......................2811.001.00--------------1.00------------
.......................................................................................................................................................GATATGTTTGTTATATTAG................................................................................191.000.001.00--------------------------
......................................................................................................................................................TGATATGTTTGTTATAATAG................................................................................201.000.001.00--------------------------
.....................................................................................................................................................................................................CAGAAAGAGGGGAAAAAGGA.................................2011.001.00---1.00-----------------------
......................................................................................................................................................TGATATGTTTGTTATAACAG................................................................................201.000.001.00--------------------------
...........................................................................................................................................................TGTTTGTTATAGCTATCTTAAAAGGGCTTCT................................................................3111.001.00---------------------1.00-----
......................................................................................................................................................TGATATGTTTGTTATGAG..................................................................................181.000.001.00--------------------------
......................................................................................................................................................TGATATGTTTGTTATATTGT................................................................................201.000.001.00--------------------------
........................................................................................................................................................................................................................AGCGAGCTGTGGTGGACAAGGTGTTTA.......271.000.00-1.00-------------------------
..................................................................................................................................................................................................................................GGTGGACAAGGTGTTTTTCTC...2111.001.00-----------------1.00---------
....................................................................................................................................................................................................................AAGGAGCGAGCTGTGGTGGACAAGGC............261.000.00-1.00-------------------------
..............................................................................................................................................................................................................................CTGTGGTGGACAAGGTGTTTTT......2211.001.00----------------------1.00----
.................................................................................................................................................................................AGGGCTTCTTTTTTTTAATGCTTG.................................................241.000.00------1.00--------------------
.....................................................................................................................................................................................................................AGGAGCGAGCTGTGGTGGACA................2111.001.00---------------1.00-----------
.................................................................................................................................................................................................AATGCAGAAAGAGGGGTG.......................................181.000.00------------------------1.00--
......................................................................................................................................................TGATATGTTTGTTATATTTG................................................................................201.000.001.00--------------------------
...........................................TGAATATGAGGAGCAGT..............................................................................................................................................................................................1711.001.00-1.00-------------------------
......................................................................................................................................................TGATATGTTTGTTATATCAC................................................................................201.000.001.00--------------------------
.....................................................................................................................................................................................................................AGGAGCGAGCTGTGGTGGACAAGGTGTTTCTC.....321.000.00------1.00--------------------
..................................AAACATGTTTGAATATGAGGAGC.................................................................................................................................................................................................2311.001.00------------------1.00--------
............................................................................................................................................................................................................................AGCTGTGGTGGACAAGGTGTTCTC......241.000.00--------------------1.00------
.....................................................................................................................................................................................................................AGGAGCGAGCTGTGGTGGACAAGGCG...........261.000.00------1.00--------------------
.....................................................................................................................................................................................................................AGGAGCGAGCTGTGGTGG...................1811.001.00-------------------------1.00-
....................................................................................................................................................................................................................AAGGAGCGAGCTGTGGTGGACAA...............2311.001.00-----------1.00---------------
......................................................................................................................................................TGATATGTTTGTTATAGTAG................................................................................201.000.001.00--------------------------
......CAGTTTTTAGATAACCTC..................................................................................................................................................................................................................................181.000.00-----1.00---------------------
.......................................................................................................................................................GATATGTTTGTTATAATAG................................................................................191.000.001.00--------------------------
....................................................................................................................................................................................................................AAGGAGCGAGCTGTGGTGGACA................2211.001.00---------1.00-----------------
......................................................................................................................................................TGATATGTTTGTTATAGGAG................................................................................201.000.001.00--------------------------
......................................................................................................................................................TGATATGTTTGTTATACTAG................................................................................201.000.001.00--------------------------
...................................................................................................................................................................................................................................GTGGACAAGGTGTTTTTC.....1811.001.00---1.00-----------------------
.....................................................................................................................................................................................................................AGGAGCGAGCTGTGGTGGA..................1911.001.00---1.00-----------------------
........................................................................................................................................................................................................................AGCGAGCTGTGGTGGACA................1811.001.00----------------1.00----------
....................................ACATGTTTGAATATGAGG....................................................................................................................................................................................................1811.001.00-------1.00-------------------
.................................................................................................................................................................................................................AAAAAGGAGCGAGCTGTGG......................1911.001.00-------1.00-------------------
....................................................................................................................................................................................................................AAGGAGCGAGCTGTGGTGGGCA................221.000.00---------1.00-----------------
........................................................................................................................................................................................................AAAGAGGGGAAAAAGGAGCGC.............................211.000.00------------1.00--------------

Antisense strand
CTTATTCAGTTTTTAGATAACATTGTTTTCTCAAAAACATGTTTGAATATGAGGAGCAGTGTAAGTATGCAAGTCTGTGTTTTGTAAATTCAGTTTTTATCTTGATAGCTGTTTATGTTGACTTAGATGAAACATGGTTCTTTAATTTTATGATATGTTTGTTATAGCTATCTTAAAAGGGCTTCTTTTTTTTAATGCAGAAAGAGGGGAAAAAGGAGCGAGCTGTGGTGGACAAGGTGTTTTTCTCAAG
.......................................................................................................((((((...(((((((...........)))))))...........(((((((....)))))))))))))..............................................................................
................................................................................................97...........................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532879(GSM532879)
G659N. (cervix)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................................................TTTTTTTTAATGCAGAACA.............................................. 191.000.00----------1.00----------------