ID: uc010opf.1_intron_14_0_chr1_67450276_f.5p
GENE: MIER1(15)
chr1:67450226-67450475+


(6)
B-CELL
(2)
BRAIN
(6)
BREAST
(15)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(8)
LIVER
(1)
OTHER
(21)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TGGTTTCATTTATATTTCTTTCAACTTAGGAGTGTCATCTAATGGACCAGGTGAAATATTAAACAAAGAGGAAGTAAAAGTTGAAGGGTTACACATTAATGGACCAACAGGTGGAAATAAGAAACCACTTCATGCAGATATGGATACTAATGGTTATGAAACAGATAACCTTACCACTGACCCAAAACTTGCCCATATGACTGCAAGAAATGAAAATGATTTTGATGAAAAAAGTGAGAGACCTGCCAAA
...............................................................................(((((((((((...((....))..(((.....)))........)))).))))).))...................................................................................................................
.............................................................62..............................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189785SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................AGAGGAAGTAAAAGTCATC.....................................................................................................................................................................197.000.004.00-2.00------------1.00---------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTCGG......................................................................................................................................................................187.000.002.00-1.00---1.00---1.00-1.00-----------------1.00------------------------------------------
..................................................................AGAGGAAGTAAAAGTCGGA.....................................................................................................................................................................195.000.001.00---1.00-1.00------------------------------------1.00----------------1.00------------
..................................................................AGAGGAAGTAAAAGTCGTC.....................................................................................................................................................................194.000.00----------------1.00------------------1.00-----1.00------------1.00------------------
..................................................................AGAGGAAGTAAAAGTCGCA.....................................................................................................................................................................194.000.00------------------1.00--------------------------1.00---------1.00-------1.00---------
....................................................................................................................................................................................................ATGACTGCAAGAAATGA.....................................1714.004.00---4.00---------------------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTCGTG.....................................................................................................................................................................193.000.00----2.00---------------1.00----------------------------------------------------
.....................................................................................................................................................................................................TGACTGCAAGAAATGAAAATGAT..............................2313.003.00-2.00----------------------------------1.00------------------------------------
...................................................................................................................AATAAGAAACCACTTCATGCAGA................................................................................................................2313.003.00-3.00-----------------------------------------------------------------------
.................................................................AAGAGGAAGTAAAAGTCGT......................................................................................................................................................................193.000.00-------------------1.00---------1.00-------------------1.00-----------------------
..................................................................AGAGGAAGTAAAAGTCGA......................................................................................................................................................................183.000.001.00-1.00----------------------------1.00-----------------------------------------
..................................................................AGAGGAAGTAAAAGTCGTT.....................................................................................................................................................................193.000.00------------------------1.00--1.00------------------1.00--------------------------
...................................................................GAGGAAGTAAAAGTTGTA.....................................................................................................................................................................183.000.00-------------------------1.001.00-------------1.00--------------------------------
.......................................................................................................CCAACAGGTGGAAATAAGAAACCACT.........................................................................................................................2613.003.00-----3.00-------------------------------------------------------------------
...................................................................GAGGAAGTAAAAGTTTGA.....................................................................................................................................................................182.000.00-----------2.00-------------------------------------------------------------
...........................................................................................CACATTAATGGACCAACAG............................................................................................................................................1912.002.00-----------------------1.00---------------------------1.00---------------------
..................................................................AGAGGAAGTAAAAGTCGC......................................................................................................................................................................182.000.00---------------------1.00----------------------------1.00----------------------
..................................................................AGAGGAAGTAAAAGTGGTA.....................................................................................................................................................................192.000.001.00--------------1.00---------------------------------------------------------
...................................................................GAGGAAGTAAAAGTTGTAAC...................................................................................................................................................................202.000.00-----------------1.00------------------------------1.00------------------------
..................................................................AGAGGAAGTAAAAGTCGAA.....................................................................................................................................................................192.000.00-----------------------------------------------1.00-----------------1.00-------
............................................................................................................................CCACTTCATGCAGATATGGATACT......................................................................................................2412.002.00---------------------------------------1.00----1.00----------------------------
..................................................................AGAGGAAGTAAAAGTCATG.....................................................................................................................................................................192.000.002.00------------------------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTTGTA.....................................................................................................................................................................1951.200.600.60------------------0.20-------------------------------------------------0.200.20--
...................................................................GAGGAAGTAAAAGTTAAC.....................................................................................................................................................................181.000.00----------------------------------------------------------------1.00--------
...................................................................................................TGGACCAACAGGTGGAAA.....................................................................................................................................1811.001.00--------------------------------------1.00----------------------------------
.....................................................................GGAAGTAAAAGTTGAAGGGTTAC..............................................................................................................................................................2311.001.001.00------------------------------------------------------------------------
..................................................................................................ATGGACCAACAGGTGGAAATACG.................................................................................................................................231.000.00-1.00-----------------------------------------------------------------------
....................................................................................................................................................................ATAACCTTACCACTGACCC...................................................................1911.001.00-----------------------------------------------------1.00-------------------
...........................AGGAGTGTCATCTAAATAA............................................................................................................................................................................................................191.000.00------------------------------------------1.00------------------------------
..................................................................AGAGGAAGTAAAAGTCATT.....................................................................................................................................................................191.000.001.00------------------------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTTATA.....................................................................................................................................................................191.000.00--1.00----------------------------------------------------------------------
..........................................TGGACCAGGTGAAATTCT..............................................................................................................................................................................................181.000.00--------------1.00----------------------------------------------------------
..................................................................................................ATGGACCAACAGGTGGAAATAAGAA...............................................................................................................................2511.001.00-1.00-----------------------------------------------------------------------
...................................................................................................................................................................GATAACCTTACCACTGACCC...................................................................2011.001.00-------1.00-----------------------------------------------------------------
.........................................................................................................................................................................................AACTTGCCCATATGACTGCAAGA..........................................2311.001.00---------------------------------------------------------1.00---------------
...........................................................................................................................................ATGGATACTAATGGTTATGAAACAGA.....................................................................................2611.001.00-------------------------------------------------------------1.00-----------
...................................................................................................................................................................................ACCCAAAACTTGCCCACATG...................................................201.000.00---------1.00---------------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTCGGC.....................................................................................................................................................................191.000.00----------------------------------------------------------1.00--------------
.......................................TAATGGACCAGGTGAAATATTAAAC..........................................................................................................................................................................................2511.001.00-------1.00-----------------------------------------------------------------
..................................................................................................ATGGACCAACAGGTGGAAATATG.................................................................................................................................231.000.00-1.00-----------------------------------------------------------------------
..........................................TGGACCAGGTGAAATATTAA............................................................................................................................................................................................2011.001.00----------------------------------------------------1.00--------------------
...........................................................TAAACAAAGAGGAAGTAAAAGTTGAAG....................................................................................................................................................................2711.001.00---------------------------------1.00---------------------------------------
......CATTTATATTTCTTTCAACTTAG.............................................................................................................................................................................................................................2311.001.00----------1.00--------------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTGGGG.....................................................................................................................................................................191.000.00-----------------------------------------------------------1.00-------------
..................................................................AGAGGAAGTAAAAGTGGGA.....................................................................................................................................................................191.000.00------1.00------------------------------------------------------------------
..............................................................................................................................ACTTCATGCAGATATGGACAC.......................................................................................................211.000.00-------------1.00-----------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTCTTA.....................................................................................................................................................................191.000.00-------------------------------------1.00-----------------------------------
...................................................................GAGGAAGTAAAAGTTGGAC....................................................................................................................................................................191.000.00----------------1.00--------------------------------------------------------
................................TGTCATCTAATGGACCAGGTGAAA..................................................................................................................................................................................................2411.001.00--------------------------------------------------------1.00----------------
....................................................................................................................................................................................................ATGACTGCAAGAAATGAAAATT................................2211.001.00-1.00-----------------------------------------------------------------------
...............................................................CAAAGAGGAAGTAAAAGTTGAAGGGTTA...............................................................................................................................................................2811.001.00--------1.00----------------------------------------------------------------
.........................................................................................................................................................................CTTACCACTGACCCAAAACTTGCCCAT......................................................2711.001.00----------------------------------1.00--------------------------------------
..................................................................................................ATGGACCAACAGGTGGAAATAAGAAACCACTTCATGCAGATATGGATACTAATGGTTATGAAACAGATAACCTTA.............................................................................7511.001.00--------------------------------------------------------------1.00----------
..................................................................AGAGGAAGTAAAAGTGGT......................................................................................................................................................................181.000.001.00------------------------------------------------------------------------
.....................................................................................................................................................................................................TGACTGCAAGAAATGAAAATA................................211.000.00----------------------1.00--------------------------------------------------
..................................................................AGAGGAAGTAAAAGTCGCG.....................................................................................................................................................................191.000.00----1.00--------------------------------------------------------------------
.................................................................AAGAGGAAGTAAAAGTCGTA.....................................................................................................................................................................201.000.00------------1.00------------------------------------------------------------
........................................................TATTAAACAAAGAGGAAGT...............................................................................................................................................................................1911.001.00----------------------------1.00--------------------------------------------
....................................................................................................................................................................................................ATGACTGCAAGAAATGAAAAT.................................2111.001.00--------------1.00----------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTTGTAAC...................................................................................................................................................................2150.600.60------------------0.20------------------------------------------------0.40-----
..................................................................AGAGGAAGTAAAAGTTG.......................................................................................................................................................................1750.600.60-------0.200.20-----------0.20----------------------------------------------------
...............................................................CAAAGAGGAAGTAAAAGTT........................................................................................................................................................................1920.500.50------------------------------------------------------------------0.50------
...................................................................................................TGGACCAACAGGTGGA.......................................................................................................................................1630.330.33-----------------0.33-------------------------------------------------------
..................................................................AGAGGAAGTAAAAGTTGCGGA...................................................................................................................................................................2150.200.60--------------------------------------------------------------------0.20----
...................................................................................................TGGACCAACAGGTGG........................................................................................................................................1570.140.14-----------------------------------------------------------------------0.14-
...TTTCATTTATATTTCTTT.....................................................................................................................................................................................................................................1890.110.11------------------------------------------------------------------------0.11

Antisense strand
TGGTTTCATTTATATTTCTTTCAACTTAGGAGTGTCATCTAATGGACCAGGTGAAATATTAAACAAAGAGGAAGTAAAAGTTGAAGGGTTACACATTAATGGACCAACAGGTGGAAATAAGAAACCACTTCATGCAGATATGGATACTAATGGTTATGAAACAGATAACCTTACCACTGACCCAAAACTTGCCCATATGACTGCAAGAAATGAAAATGATTTTGATGAAAAAAGTGAGAGACCTGCCAAA
...............................................................................(((((((((((...((....))..(((.....)))........)))).))))).))...................................................................................................................
.............................................................62..............................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR029129(GSM416758)
SW480. (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR189785SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................................CATATCTGCATGAAGTGGT............................................................................................................ 1911.001.00--------------------------------1.00----------------------------------------
......................................................................................................................................................................................CATATGGGCAAGTTTTG................................................... 1711.001.00--------1.00----------------------------------------------------------------
......................................................................................................................................................................................................................................AAAGTGAGAGACCTGCCAAACG 221.000.00-------------1.00-----------------------------------------------------------
...................................................................GAGGAAGTAAAAGTTGAACG................................................................................................................................................................... 201.000.00---------1.00---------------------------------------------------------------