ID: uc010onu.1_intron_14_0_chr1_54293727_r.3p
GENE: (3)
chr1:54293677-54293926-


(3)
B-CELL 		(3)
BRAIN 		(10)
CELL-LINE 		(2)
HEART 		(2)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGGATGAGAGGGGATAGTTTAGATCCTCTAACTGCATATGCTGTAGGTTATAAAGCCACAGTAATGTGTTTCCTTTGCAGTTGTGCCTTCTATTCCTTGCTCCAGACTAGCTCTGATAGGGAAGATCATTCATCCTCAGCAACTCATGCACTCATTTATTCATGCTGCAATGGGAATGGTGATGGCCTGGTGTGCTGCAGTGATAACCCAGGGCCAGTACAGCTTTCTTGTGGTTCCCTGCACTGGTACT
.................................................................................................((((.((((.....))))...((((.((....)).)))).)))).((((((((..(((......))).)))).))))............................................................................
.................................................................................................98............................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343337SRR189785SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................CACTCATTTATTCATGCTGCAATG..............................................................................24113.0013.007.001.00----3.001.00-------1.00---------------
....................................................................................................................................................CACTCATTTATTCATGCTGCAAT...............................................................................2315.005.004.001.00-----------------------------
......................................................................................................CAGACTAGCTCTGATAGGGAAGATC...........................................................................................................................2514.004.00---3.00----------------------1.00----
.......................................................................................................AGACTAGCTCTGATAGGGAAGATC...........................................................................................................................2414.004.00---1.00-2.00----------------1.00--------
...........................................................................................................................................CAACTCATGCACTCATTTATTCATG......................................................................................2513.003.00-2.00-----1.00-----------------------
...........................................................................................................................................CAACTCATGCACTCATTCATG..........................................................................................213.000.00-2.00-----1.00-----------------------
..............................................................................................................................................................................................................................CTTTCTTGTGGTTCCCTGCACTG.....2313.003.00--------3.00----------------------
....................................................................................................................................................CACTCATTTATTCATGCTGCAA................................................................................2212.002.002.00------------------------------
..........................................................................................................................................................................TGGGAATGGTGATGGCC...............................................................1712.002.00----2.00--------------------------
..........................................................................................................CTAGCTCTGATAGGGAAGA.............................................................................................................................1912.002.00---------2.00---------------------
.........................................................................................................................................................................ATGGGAATGGTGATGGCCTGGTG..........................................................2312.002.00---2.00---------------------------
...................................................................................................................................................................................................................................TTGTGGTTCCCTGCACTGG....1912.002.00--------------1.00---1.00------------
..........................................................................................................................................................................................................................ACAGCTTTCTTGTGGTTCCCTGCACTGGT...2911.001.00--1.00----------------------------
..........................................................................................................................................................................................................ATAACCCAGGGCCAGTACAGCTTTCC......................261.000.00--1.00----------------------------
..........................................................................................................CTAGCTCTGATAGGGAAG..............................................................................................................................1811.001.00-----------------1.00-------------
.........................................................................................................ACTAGCTCTGATAGGGAAGATC...........................................................................................................................2211.001.00----------------1.00--------------
............................................................................................TTCCTTGCTCCAGACTAGCTCCG.......................................................................................................................................231.000.00----1.00--------------------------
...................................................................................................................................................................................................TGCAGTGATAACCCAGGGCCAGTACAGCTCTC.......................321.000.00--1.00----------------------------
.........................................................................................................................................................................................................................TACAGCTTTCTTGTGGTTCCCTGCACTG.....2811.001.00---------------------------1.00---
...........................................................................................................................................CAACTCATGCACTCATTTATTCAT.......................................................................................2411.001.00-1.00-----------------------------
................................................................................................................................................................................TGGTGATGGCCTGGTGTGCTGCAGCGAC..............................................281.000.00----1.00--------------------------
.................................................................................................................................................................................................................AGGGCCAGTACAGCTTTCTTGCGG.................241.000.00--1.00----------------------------
..........................................................................................................................................................................................................................ACAGCTTTCTTGTGGTTCCCTGC.........2311.001.00----------1.00--------------------
...................................................................................................................................ATCCTCAGCAACTCATGCA....................................................................................................1911.001.00---------------------1.00---------
..................................................................................................GCTCCAGACTAGCTCTGATAGGGAAGATC...........................................................................................................................2911.001.00-------------------1.00-----------
.............................................................................................................................................................................................................ACCCAGGGCCAGTACAGCTTG........................211.000.00--1.00----------------------------
............................................................................................................................ATCATTCATCCTCAGCAACTCATGCACTC.................................................................................................2911.001.001.00------------------------------
...........................................................................................................................................................................GGGAATGGTGATGGCCTGGTGTGCTGCAG..................................................2911.001.00-----------1.00-------------------
.....................................................................................................................................................................................................CAGTGATAACCCAGGGCCAGTACAGCTT.........................2811.001.00-------------------------1.00-----
........................................................................................................GACTAGCTCTGATAGGGAAGATC...........................................................................................................................2311.001.00-----1.00-------------------------
.......................................................................................................AGACTAGCTCTGATAGGGAAG..............................................................................................................................2111.001.00-----1.00-------------------------
................................................................................TTGTGCCTTCTATTCCTTGCTC....................................................................................................................................................2211.001.00------------------------1.00------
...........................................................................................................................................CAACTCATGCACTCATTCAT...........................................................................................201.000.00-1.00-----------------------------
......................................................................................................CAGACTAGCTCTGATAGGGAAGATCA..........................................................................................................................2611.001.00-------------1.00-----------------
..........................................................................................................................................................................TGGGAATGGTGATGGCCTGGTGTGCTGCGA..................................................301.000.00--1.00----------------------------
...........................................................................................................................................CAACTCATGCACTCATTCA............................................................................................191.000.00-1.00-----------------------------
.....................................................................................................................................................ACTCATTTATTCATGCTGCAATG..............................................................................2311.001.00------1.00------------------------
.....................................................................................................................................................ACTCATTTATTCATGCTGCAA................................................................................2111.001.001.00------------------------------
.........................................................................................................................................................................ATGGGAATGGTGATGGCC...............................................................1811.001.00--1.00----------------------------
................................................................................................................................................................................TGGTGATGGCCTGGTGTGCTGCAGTG................................................2611.001.00----1.00--------------------------
.........................................................................................................................................................................................................GATAACCCAGGGCCAGTA...............................1811.001.00-----------------------1.00-------
............................................................................................................................ATCATTCATCCTCAGCAACTCATGCACTCA................................................................................................3011.001.001.00------------------------------
....................................................................................................................................................CACTCATTTATTCATGCTGCA.................................................................................2111.001.001.00------------------------------
...............................................................................................................................................................................ATGGTGATGGCCTGGTGTGCTG.....................................................2211.001.00--1.00----------------------------
...................................................................................................................................................................GCTGCAATGGGAATGGTGATGGCCTG.............................................................2611.001.00-----1.00-------------------------
................................................................................................................................................................CATGCTGCAATGGGAATGG.......................................................................1911.001.00-1.00-----------------------------
...........................................................................................................................................................................................................................CAGCTTTCTTGTGGTTC..............1720.500.50----------------------------0.50--
.............................................................................................................................TCATTCATCCTCAGCA.............................................................................................................1640.250.25-----------------------------0.25-

Antisense strand
AGGATGAGAGGGGATAGTTTAGATCCTCTAACTGCATATGCTGTAGGTTATAAAGCCACAGTAATGTGTTTCCTTTGCAGTTGTGCCTTCTATTCCTTGCTCCAGACTAGCTCTGATAGGGAAGATCATTCATCCTCAGCAACTCATGCACTCATTTATTCATGCTGCAATGGGAATGGTGATGGCCTGGTGTGCTGCAGTGATAACCCAGGGCCAGTACAGCTTTCTTGTGGTTCCCTGCACTGGTACT
.................................................................................................((((.((((.....))))...((((.((....)).)))).)))).((((((((..(((......))).)))).))))............................................................................
.................................................................................................98............................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343337SRR189785SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................TCTGGAGCAAGGAATAGAAGGC................................................................................................................................................ 2211.001.00------------1.00------------------
................................................................................................TTGCTCCAGACTAGCTAA........................................................................................................................................ 181.000.00--------------------1.00----------
............................................................................................................................................................................................................AACCCAGGGCCAGTATTC............................ 181.000.00----1.00--------------------------
.......................................................................................................................................................................................TGCAGCACACCAGGCC................................................... 1670.140.14------------------------------0.14