ID: uc010onn.1_intron_4_0_chr1_53379768_r.5p
GENE: ECHDC2(1)
chr1:53387025-53387274-


(4)
B-CELL
(5)
BRAIN
(4)
BREAST
(22)
CELL-LINE
(5)
CERVIX
(2)
HEART
(1)
HELA
(7)
LIVER
(1)
OTHER
(23)
SKIN
(1)
XRN.ip

Sense strand
GGCCGGGGGCTCAGAGATCCAAGTGCGCGCCCTGGCGGGTCCGGACCAAGGTAAATGTGCAGTTCCGGGGCGGCGCATGACGCGACTGGGACTAGGCCGGAGGCAGCGGGGGACCGGCAGGTGGGCCGCTCAGTGCGTTGAAGGATTCGATCCCCAGTCCCTCCCTCCCAGTTCTAGGCGCCCCAAACCGCTCCAGGCCTGAGAGGTGGGCGGCCGCCTTAGTGGCTCCAGACTCTAGCTGGGGGCGGGG
..........................................................((((((((((.(((........)))..))))))))..)).(((((....(((((((.((....((((((..((((....)))).)).))))....)).))))))))))))..................................................................................
.........................................................58................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR191476(GSM715586)
19genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................TTCCGGGGCGGCGCACCA..........................................................................................................................................................................1814.000.00--1.00----1.00-1.00-------1.00------------------1.00--1.00---1.00--------1.001.00---1.00----1.001.00-1.00--1.00------
..................................................................................................................................................TCGATCCCCAGTCCCTCCACCA..................................................................................228.000.00-----1.00---------1.00--------1.00----1.00--1.00----1.00---1.00-------------------------1.00-------
...............................................................................................GCCGGAGGCAGCGGGGGACCGG.....................................................................................................................................2213.003.00-3.00-------------------------------------------------------------------------
...............................................................................ACGCGACTGGGACTAGGCCGGAG....................................................................................................................................................2312.002.00----2.00----------------------------------------------------------------------
...............................................................................ACGCGACTGGGACTAGGCCGGA.....................................................................................................................................................2212.002.00--------------------1.00---------------------------------------------1.00--------
....GGGGGCTCAGAGATCCAAGTG.................................................................................................................................................................................................................................2111.001.00------------------1.00--------------------------------------------------------
...................................................................................................................................................................................................................................CCAGACTCTAGCTGGGGGCG...2011.001.00---1.00-----------------------------------------------------------------------
..............................CCTGGCGGGTCCGGAAA...........................................................................................................................................................................................................171.000.00-------------------------------------------------------------1.00-------------
..............................................................................................GGCCGGAGGCAGCGGGGGCG........................................................................................................................................201.000.00-------------------1.00-------------------------------------------------------
....................AAGTGCGCGCCCTGGCGGGTCCGGAC............................................................................................................................................................................................................2611.001.001.00--------------------------------------------------------------------------
.......................TGCGCGCCCTGGCGGGTCCGGACC...........................................................................................................................................................................................................2411.001.00-------------1.00-------------------------------------------------------------
...............................................................................ACGCGACTGGGACTAGGC.........................................................................................................................................................1811.001.00----------------------------------------1.00----------------------------------
.............................................................................................................................................................................CTAGGCGCCCCAAACA.............................................................161.000.00-----------------------------------------------------------------------1.00---
............................................................................ATGACGCGACTGGGACTCGGC.........................................................................................................................................................211.000.00-----------------------------------------------------------1.00---------------
...................................................................................................................................................CGATCCCCAGTCCCTCCACCA..................................................................................211.000.00-----1.00---------------------------------------------------------------------
..............................................................TTCCGGGGCGGCGCAGCA..........................................................................................................................................................................181.000.00------------------------------------------------1.00--------------------------
....................................................................................ACTGGGACTAGGCCGGAGGCAGCGGGG...........................................................................................................................................2711.001.00---1.00-----------------------------------------------------------------------
.............................................................................TGACGCGACTGGGACTAGGCCGGAGGCA.................................................................................................................................................2811.001.001.00--------------------------------------------------------------------------
....................................................................................................................................................GATCCCCAGTCCCTCCACCA..................................................................................201.000.00-----------1.00---------------------------------------------------------------
........................................................................................................................................................................................................GAGAGGTGGGCGGCCGCCTT..............................2011.001.00------------------------------1.00--------------------------------------------
......................................................................................TGGGACTAGGCCGGAGGCAG................................................................................................................................................2011.001.00---------------------1.00-----------------------------------------------------
.....................................................................................................................................................................................................CCTGAGAGGTGGGCGAGCG..................................191.000.00--1.00------------------------------------------------------------------------
.................................GGCGGGTCCGGACCAAGG.......................................................................................................................................................................................................1811.001.00---------------------------------------------1.00-----------------------------
..................................................................................................................................................TCGATCCCCAGTCCCTC.......................................................................................1711.001.00--------------------------------------------------1.00------------------------
.....................................GGTCCGGACCAAGGTAAATGTGCAG............................................................................................................................................................................................2511.001.00---------------------------------1.00-----------------------------------------
..................................................................................CGACTGGGACTAGGCCGGAGG...................................................................................................................................................2111.001.00---1.00-----------------------------------------------------------------------
..................................................................................CGACTGGGACTAGGCCGG......................................................................................................................................................1811.001.00------------------------------------------1.00--------------------------------
............................GCCCTGGCGGGTCCGCCG............................................................................................................................................................................................................181.000.00--------------------------------------1.00------------------------------------
..CCGGGGGCTCAGAGATGGC.....................................................................................................................................................................................................................................191.000.00-------------------------------------------------------1.00-------------------
...................................................................................................................................................CGATCCCCAGTCCCTCCACCC..................................................................................211.000.00-----------------------------------1.00---------------------------------------
.............................................................GTTCCGGGGCGGCGCACCA..........................................................................................................................................................................191.000.00--1.00------------------------------------------------------------------------
.......................................................................................................................................................CCCCAGTCCCTCCCTCCTCTC..............................................................................211.000.00------1.00--------------------------------------------------------------------
...........CAGAGATCCAAGTGCGCGC............................................................................................................................................................................................................................1911.001.00----------------------------------------------------------1.00----------------
..................................GCGGGTCCGGACCAAG........................................................................................................................................................................................................1611.001.001.00--------------------------------------------------------------------------
.............................................................................................AGGCCGGAGGCAGCGGCGCG.........................................................................................................................................201.000.00----------------------------------------------1.00----------------------------
.........................................CGGACCAAGGTAAATGTGCA.............................................................................................................................................................................................2011.001.00------------------------------------------------------------1.00--------------
.................................................GGTAAATGTGCAGTTCCG.......................................................................................................................................................................................1811.001.00---------------------------------------------------1.00-----------------------
..................................................................................................................................................TCGATCCCCAGTCCCTCCCC....................................................................................201.000.00-----------1.00---------------------------------------------------------------
.....................................................................GCGGCGCATGACGCGACTGGGACTAG...........................................................................................................................................................2611.001.00----------------------------------------------------------------------1.00----
..............................................................................GACGCGACTGGGACTAGGCCGGAGGCAGCG..............................................................................................................................................3011.001.001.00--------------------------------------------------------------------------
..................................................................................................................................................TCGATCCCCAGTCCCTCCGCCT..................................................................................221.000.00-----------------------------------------------1.00---------------------------
.....................................................................................................................................................................................................CCTGAGAGGTGGGCGAGC...................................181.000.00--------------------------1.00------------------------------------------------
................................................................................................................ACCGGCAGGTGGGCCGCTCAGTG...................................................................................................................2311.001.00-------------------------------------------------1.00-------------------------
..............................................................................GACGCGACTGGGACTAGGCCGGAGGCAGC...............................................................................................................................................2911.001.001.00--------------------------------------------------------------------------
......................................................................................TGGGACTAGGCCGGAGGC..................................................................................................................................................1811.001.00--------------------------------------------------------1.00------------------
..............................................................TTCCGGGGCGGCGCACCAT.........................................................................................................................................................................191.000.00---------------------------1.00-----------------------------------------------
.....................................................................................................................................................ATCCCCAGTCCCTCCCCCA..................................................................................191.000.00-------------------------------1.00-------------------------------------------
.................................................................................GCGACTGGGACTAGGCCGGAGGCAGCGG.............................................................................................................................................2811.001.001.00--------------------------------------------------------------------------
..................................................................................................................................................TCGATCCCCAGTCCCTCCCCCC..................................................................................221.000.00---------1.00-----------------------------------------------------------------
................................................................................CGCGACTGGGACTAGGCCGGAGGCA.................................................................................................................................................2511.001.00--------1.00------------------------------------------------------------------
........................GCGCGCCCTGGCGGGTCCGGAGC...........................................................................................................................................................................................................231.000.00----------------------------------------------------------------1.00----------
.....................................................................................CTGGGACTAGGCCGGAGGCAGCGGGGGA.........................................................................................................................................2811.001.001.00--------------------------------------------------------------------------
.........CTCAGAGATCCAAGTG.................................................................................................................................................................................................................................1640.250.25------------------------------------------------------------------------0.25--
...........CAGAGATCCAAGTGC................................................................................................................................................................................................................................1580.120.12--------------------------------------------------------------------------0.12

Antisense strand
GGCCGGGGGCTCAGAGATCCAAGTGCGCGCCCTGGCGGGTCCGGACCAAGGTAAATGTGCAGTTCCGGGGCGGCGCATGACGCGACTGGGACTAGGCCGGAGGCAGCGGGGGACCGGCAGGTGGGCCGCTCAGTGCGTTGAAGGATTCGATCCCCAGTCCCTCCCTCCCAGTTCTAGGCGCCCCAAACCGCTCCAGGCCTGAGAGGTGGGCGGCCGCCTTAGTGGCTCCAGACTCTAGCTGGGGGCGGGG
..........................................................((((((((((.(((........)))..))))))))..)).(((((....(((((((.((....((((((..((((....)))).)).))))....)).))))))))))))..................................................................................
.........................................................58................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR040030(GSM532915)
G013N. (cervix)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR191476(GSM715586)
19genomic small RNA (size selected RNA from t. (breast)
SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR037931(GSM510469)
293GFP. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
........GCTCAGAGATCCAAGGAC................................................................................................................................................................................................................................ 185.000.00------1.00---------------1.00--1.00--------1.00---------1.00------------------------------
........GCTCAGAGATCCAAGGAG................................................................................................................................................................................................................................ 183.000.00----------2.00-----------------1.00----------------------------------------------
......................................................................................................................................................CTGGGAGGGAGGGACTGGGGA............................................................................... 2111.001.00--------1.00------------------------------------------------------------------
....................................................................................................................................................GATCCCCAGTCCCTCCCTCTG................................................................................. 211.000.00-----------------------1.00---------------------------------------------------
..................................................................................................................................CAGTGCGTTGAAGGATC....................................................................................................... 171.000.00--------------1.00------------------------------------------------------------
.........................................................................................................GCGGGGGACCGGCAGGTGCC............................................................................................................................. 201.000.00------------------------------------------------------1.00--------------------
.......................................................................................................................................................................CCAGTTCTAGGCGCCTGC................................................................. 181.000.00---------------------------------------------------------------------1.00-----
.......................................................................................................CAGCGGGGGACCGGCTCC................................................................................................................................. 181.000.00-------1.00-------------------------------------------------------------------
........................................................................................................................................................CTGGGAGGGAGGGACTGGG............................................................................... 1931.001.00-0.67----------0.33--------------------------------------------------------------
........................GCGCGCCCTGGCGGGCGG................................................................................................................................................................................................................ 181.000.00----------------1.00----------------------------------------------------------
........GCTCAGAGATCCAAGGAA................................................................................................................................................................................................................................ 181.000.00------------1.00--------------------------------------------------------------
.........................................................................................................................................................ACTGGGAGGGAGGGACTGG.............................................................................. 1911.001.00-1.00-------------------------------------------------------------------------
.............................................................................................................................................................AGAACTGGGAGGGAGGGA........................................................................... 1830.330.33----0.33----------------------------------------------------------------------
.............................................................................................................................................................................................CCTCTCAGGCCTGGAGC............................................ 1740.250.25-------------------------------------------------------------------------0.25-