ID: uc010olf.1_intron_1_0_chr1_45288841_r
GENE: (20)
chr1:45288791-45288964-


(1)
AGO1.ip 		(4)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(3)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTGCTGGGTCTGCTCATGCTTGCTGGTTCCCACTTTGACTTCATTGTAAGGTAGGGAGGGCTCGGGGCAGGGAGGCAGGGCTCAGGACAGGCCTGGGCTGACTCCCCCCACACCCTACCCCTAGGTACTTCTTTGCGGCGCTGACAGTGCTCACGCTCCTGGGCCTCCTCCATG
...................................................(((((((((....(((..(((((....((((((((.....))))))))..))))))))...))))..)))))...................................................
..................................................51.......................................................................124................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189786SRR189785SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR553576(SRX182782)
source: Testis. (testes)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM532886(GSM532886)
G850T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
..................................................GTAGGGAGGGCTCGGGGCAG........................................................................................................20150.0050.0026.0011.00-13.00---------------------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGC..................................................................................................26134.0034.001.00-14.00--2.005.00----1.00--2.00--1.00-2.002.00-----1.00-----------1.00-1.00-1.00------
...................................................TAGGGAGGGCTCGGGGCAGGGAGGC..................................................................................................25110.0010.00--1.00--1.00--5.00--1.00-----1.001.00------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGCAGGGCTCAGGACAGGCCTGGGCTGACTCCCCCCACACCCTACCCCTAG..................................................7417.007.00-------7.00-----------------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGCA.................................................................................................2717.007.00----6.00--------------------1.00-----------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGG...................................................................................................2517.007.00--1.00--2.002.00----1.001.00------------------------------------
..................................................GTAGGGAGGGCTCGGGGC..........................................................................................................1815.005.00-------------1.00--------------1.00--------1.00-1.00------1.00--
...................................................TAGGGAGGGCTCGGGGCAGGGAGG...................................................................................................2414.004.00---------4.00---------------------------------------
..................................................GTAGGGAGGGCTCGGGGTAG........................................................................................................204.000.00-3.00-1.00---------------------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGG.......................................................................................................2114.004.00---1.00-----------2.00-------------------------1.00-------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGGA.................................................................................................2714.007.00----4.00--------------------------------------------
...................................................TAGGGAGGGCTCGGGGCA.........................................................................................................1813.003.00-1.00-----------2.00-----------------------------------
.....................GCTGGTTCCCACTTTGACTTCATTGTAAG............................................................................................................................2913.003.00----------3.00--------------------------------------
....................................................................................................ACTCCCCCCACACCCTACCCCTAG..................................................2412.002.001.00----------------------1.00-------------------------
..................................................GTAGGGAGGGCTCGGGCAG.........................................................................................................1912.001.00-2.00-----------------------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGA.....................................................................................................2312.002.00--1.00---------------------------------1.00------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGCAGGGCC............................................................................................322.000.00-----2.00-------------------------------------------
..................................................GTAGGGAGGGCTCGGGGCCG........................................................................................................2012.005.002.00------------------------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGA.......................................................................................................2111.0050.00--------------------------------------------1.00----
.....................................................GGGAGGGCTCGGGGCCGGG......................................................................................................191.000.00--------------------------------1.00----------------
..................................................GTAGGGAGGGCTCGGGCAA.........................................................................................................1911.001.00-1.00-----------------------------------------------
....................................................AGGGAGGGCTCGGGGCAGGGAGAA..................................................................................................241.000.00----------------1.00--------------------------------
..........................................................................................GCCTGGGCTGACTCCCCCCACACCCTACC.......................................................2911.001.00--------------1.00----------------------------------
..............................................................CGGGGCAGGGAGGCAGGGTT............................................................................................201.000.00------------1.00------------------------------------
.....................................................GGGAGGGCTCGGGGCAGGGATTTA.................................................................................................241.000.00------------------------------1.00------------------
............................................................CTCGGGGCAGGGAGGCAGGGCTA...........................................................................................231.000.00-------------------------------------------1.00-----
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGCAG................................................................................................2811.001.00--1.00----------------------------------------------
...................................................................................................................................TTTGCGGCGCTGACAGTG.........................1811.001.00-----------------------------1.00-------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGCAGGGGC............................................................................................3211.001.00-----1.00-------------------------------------------
..........................................................................................GCCTGGGCTGACTCCCCCCACACCCTACCC......................................................3011.001.00------------------1.00------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGCAGGG..............................................................................................3011.001.00-----1.00-------------------------------------------
..................................................GTAGGGAGGGCTCGGGGGAG........................................................................................................201.000.001.00------------------------------------------------
...................................................TAGGGAGGGCTCGGGGCAGGGACGC..................................................................................................251.000.00--1.00----------------------------------------------
..................................................GTAGGGAGGGCTCGGGGCAA........................................................................................................201.000.00---1.00---------------------------------------------
...................................................TAGGGAGGGCTCGGGGCAG........................................................................................................1911.001.001.00------------------------------------------------
........................................................................................................CCCCCACACCCTACCCCCGC..................................................201.000.00-----------------------------------------------1.00-
....................................................AGGGAGGGCTCGGGGCAGG.......................................................................................................1911.001.00----------------1.00--------------------------------
..................................................GTAGGGAGGGCTCGGGGCAGGG......................................................................................................2211.001.00----------------------------------1.00--------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAG....................................................................................................2411.001.001.00------------------------------------------------
...................................................TAGGGAGGGCTCGGGGCAGGGAGGCA.................................................................................................2611.001.00----1.00--------------------------------------------
...........................................................................................CCTGGGCTGACTCCCCCCACACCCTACCCCTAGC.................................................341.000.00-1.00-----------------------------------------------
....................................................................AGGGAGGCAGGGCTCAGGACTTT...................................................................................231.000.00---------------------------1.00---------------------
..................................................GTAGGGAGGGCTCGGGGCG.........................................................................................................1911.005.001.00------------------------------------------------
......................................................................................................................CCCTAGGTACTTCTTGAA......................................181.000.00-------------------------------1.00-----------------
..................................................GTAGGGAGGGCTCGGGGAAG........................................................................................................201.000.00---1.00---------------------------------------------
..................................................GTAGGGAGGGCTCGGG............................................................................................................1611.001.00---------------------1.00---------------------------
..................................................GTAGGGAGGGCTCGGGGCAGGGAGGCAGGGCTCA..........................................................................................3411.001.00------------1.00------------------------------------
.................................TTTGACTTCATTGTAAG............................................................................................................................1711.001.00------------------------1.00------------------------
...........................................................................................CCTGGGCTGACTCCCCCCACACCCTACC.......................................................2811.001.00-----1.00-------------------------------------------
...................................................TAGGGAGGGCTCGGG............................................................................................................1520.500.50--------0.50----------------------------------------
...................................................TAGGGAGGGCTCGGGG...........................................................................................................1620.500.50------------------------------------------------0.50

Antisense strand
TTGCTGGGTCTGCTCATGCTTGCTGGTTCCCACTTTGACTTCATTGTAAGGTAGGGAGGGCTCGGGGCAGGGAGGCAGGGCTCAGGACAGGCCTGGGCTGACTCCCCCCACACCCTACCCCTAGGTACTTCTTTGCGGCGCTGACAGTGCTCACGCTCCTGGGCCTCCTCCATG
...................................................(((((((((....(((..(((((....((((((((.....))))))))..))))))))...))))..)))))...................................................
..................................................51.......................................................................124................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR189786SRR189785SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189787SRR553576(SRX182782)
source: Testis. (testes)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM532886(GSM532886)
G850T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
....................................................AGGGAGGGCTCGGGGTCAT....................................................................................................... 191.000.00----------------------1.00--------------------------
.........................................................GGGCTCGGGGCAGGGACGGA................................................................................................. 201.000.00---------------------------------------------1.00---
....................................................................................................ACTCCCCCCACACCCTTT........................................................ 181.000.00---------------------------------1.00---------------
....................................................................................................ACTCCCCCCACACCCTACGGGG.................................................... 221.000.00-----------------------------------1.00-------------