ID: uc010old.1_intron_1_0_chr1_45276099_f
GENE: BTBD19(2)
chr1:45276049-45276275+


(2)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(6)
BREAST 		(16)
CELL-LINE 		(11)
CERVIX 		(1)
HEART 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(27)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CAGTGCTGGAGTTCCTATATACCAACAGTGTCAAGCTGTACCGCCACTCTGTGAGCCTGCTGACCAGGGGCCTGGGTGGGAGAGGTGGGGGGTGCCAGAGGCAGGAGTTTGCCCATTACACTGTGGGCACAGGGCAGGGGAAACTCCCTTCCACTCCCCCAACCACCCACTCTACAGGTGCTGGAAGTGCTGACAGCGGCTGTGGAGTATGGGCTGGAGGAACTGAG
..........................................................................((((.....((((((.((((((...)))).....)).)))))).)))).........................................................................................................
.......................................................................72...................................................125....................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040036(GSM532921)
G243N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR189786SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040013(GSM532898)
G648T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040041(GSM532926)
G612T. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................TGGGAGAGGTGGGGGGTG.....................................................................................................................................18212.0012.00----1.50---0.50-----0.50--------0.50---0.50----------0.50---0.500.50-0.500.500.50--0.500.500.50-0.50-0.500.50---0.50-0.500.500.50-0.50------
...........................................................................GTGGGAGAGGTGGGGGGTG.....................................................................................................................................1929.509.50---2.00--------0.50-0.501.00-------0.50---0.50-----------0.500.50---0.50----0.50---0.50-0.50--0.500.50------0.50-------
................................................................................................AGAGGCAGGAGTTTGCACAG...............................................................................................................206.000.00-3.003.00-----------------------------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGTGCT................................................................................................................195.000.002.00----1.00---1.00--------------1.00-------------------------------------------------
............................................................................................................................................................................................GCTGACAGCGGCTGTGGAG....................1913.003.00-------3.00------------------------------------------------------------------
..............................................................................................................................................................................................TGACAGCGGCTGTGGAGTATGGGCTGGAG........2912.002.00----2.00---------------------------------------------------------------------
............................................................................TGGGAGAGGTGGGGGGGGG....................................................................................................................................192.000.00--------1.00--------1.00--------------------------------------------------------
...........................................................................GTGGGAGAGGTGGGGGG.......................................................................................................................................1731.671.67--------0.33-----------------------------0.33------------------------------0.330.330.33--
..........................................................................GGTGGGAGAGGTGGGGAAAG.....................................................................................................................................201.000.00-1.00------------------------------------------------------------------------
............................................................................TGGGAGAGGTGGGGGGTGGTA..................................................................................................................................2121.0012.00-----------------------------------------0.50------------------0.50-------------
................................................................................................AGAGGCAGGAGTTTGTA..................................................................................................................171.000.00------1.00-------------------------------------------------------------------
.....................................................................................................................................................................................TGGAAGTGCTGACAGCGGCTGTGGAGT...................2711.001.00----------------------1.00---------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGCCCAGTGA............................................................................................................231.000.00--------------------------------1.00-----------------------------------------
...............................................................................................CAGAGGCAGGAGTTTGCCCATTACA...........................................................................................................2511.001.00----------------------------------1.00---------------------------------------
................................................................................................AGAGGCAGGAGTTTGCGCAG...............................................................................................................201.000.00---------1.00----------------------------------------------------------------
..............................................................................................................................................................................................................GTATGGGCTGGAGGAACT...1811.001.00---------------------1.00----------------------------------------------------
.....................................................................................................CAGGAGTTTGCCCATTGGTT..........................................................................................................201.000.00-----------------------------------1.00--------------------------------------
.....................................................................................................................................................................................................GGCTGTGGAGTATGGGCTGGAGGAACTGAG3011.001.00------------------------------1.00-------------------------------------------
.............................................ACTCTGTGAGCCTGCTGACC..................................................................................................................................................................2011.001.00-------------1.00------------------------------------------------------------
...............................................................................................................CCCATTACACTGTGGGCACAGGGCAG..........................................................................................2611.001.001.00-------------------------------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGTACG................................................................................................................191.000.00-----1.00--------------------------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGTGGA................................................................................................................191.000.00-----1.00--------------------------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGGAA.................................................................................................................181.000.00------------------1.00-------------------------------------------------------
................................................................................................................................................................................................ACAGCGGCTGTGGAGAAA.................181.000.00-------------------------1.00------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGCACAC...............................................................................................................201.000.00--1.00-----------------------------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGTACA................................................................................................................191.000.001.00-------------------------------------------------------------------------
............................................................................................................................................................................................................GAGTATGGGCTGGAGGAACTGAGCGAG271.000.00------------1.00-------------------------------------------------------------
..................................................................................................................................................................................................AGCGGCTGTGGAGTAAAA...............181.000.00-----------1.00--------------------------------------------------------------
................................................................................................................................................................................GGTGCTGGAAGTGCTGACAGCGGCTGC........................271.000.00-----------------------------1.00--------------------------------------------
.......................................................................CTGGGTGGGAGAGGTCA...........................................................................................................................................171.000.00--------------------1.00-----------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGGGCT................................................................................................................191.000.001.00-------------------------------------------------------------------------
...................................................................................................................................................................................................GCGGCTGTGGAGTATGGGGCC...........211.000.00------1.00-------------------------------------------------------------------
......................................................................................................................................................................................GGAAGTGCTGACAGCGGATAT........................211.000.00---1.00----------------------------------------------------------------------
................................................................................................AGAGGCAGGAGTTTGGGAT................................................................................................................191.000.00------------------------------------1.00-------------------------------------
..........................................................................................................................GTGGGCACAGGGCAGGGGAAAC...................................................................................2211.001.00-------------------------------1.00------------------------------------------
...........................................................................GTGGGAGAGGTGGGGGGGG.....................................................................................................................................1930.671.67--------------------------------------------------------------------0.33---0.33-
...........................................................................GTGGGAGAGGTGGGGGGT......................................................................................................................................1820.500.50------------------------------------------------0.50-------------------------
.....................................................................................................................ACACTGTGGGCACAGGGCA...........................................................................................1920.500.50-----------0.50--------------------------------------------------------------
...........................................................................GTGGGAGAGGTGGGGGGTA.....................................................................................................................................1920.500.50--------0.50-----------------------------------------------------------------

Antisense strand
CAGTGCTGGAGTTCCTATATACCAACAGTGTCAAGCTGTACCGCCACTCTGTGAGCCTGCTGACCAGGGGCCTGGGTGGGAGAGGTGGGGGGTGCCAGAGGCAGGAGTTTGCCCATTACACTGTGGGCACAGGGCAGGGGAAACTCCCTTCCACTCCCCCAACCACCCACTCTACAGGTGCTGGAAGTGCTGACAGCGGCTGTGGAGTATGGGCTGGAGGAACTGAG
..........................................................................((((.....((((((.((((((...)))).....)).)))))).)))).........................................................................................................
.......................................................................72...................................................125....................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040036(GSM532921)
G243N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR189786SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040013(GSM532898)
G648T. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040041(GSM532926)
G612T. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR040016(GSM532901)
G645N. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040033(GSM532918)
G603T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		SRR038863(GSM458546)
MM603. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................GGTGGGAGAGGTGGGGGA....................................................................................................................................... 181.000.00---1.00----------------------------------------------------------------------
.........................CAGTGTCAAGCTGTAAA......................................................................................................................................................................................... 171.000.00-1.00------------------------------------------------------------------------
....................................................................................................GCAGGAGTTTGCCCAAGT............................................................................................................. 181.000.00----------1.00---------------------------------------------------------------
......................................................................................GGGGGGTGCCAGAGGCAGGAG........................................................................................................................ 211.000.00----------------------------1.00---------------------------------------------
...................................................................................................................................................................................................GCCCATACTCCACAGCCGC............. 1911.001.00------1.00-------------------------------------------------------------------
.................................................................................................................................................................................................................TGGGCTGGAGGAACTAGG 181.000.00-------------------------------------1.00------------------------------------
.........................CAGTGTCAAGCTGTAAAC........................................................................................................................................................................................ 181.000.00----------1.00---------------------------------------------------------------
...................................................................................................................................................CTTCCACTCCCCCAACAA.............................................................. 181.000.00----------------1.00---------------------------------------------------------
..............................................................................................................................................................ACCTGTAGAGTGGGTGGTTGG................................................ 2111.001.00---------------------------------1.00----------------------------------------
........GAGTTCCTATATACCAACATG...................................................................................................................................................................................................... 211.000.00-------------------1.00------------------------------------------------------
.....................TGGCGGTACAGCTTGACACTGTTGG..................................................................................................................................................................................... 2511.001.00--------------------------1.00-----------------------------------------------
......................................................................................................................................TGGAAGGGAGTTTCCCCTG.......................................................................... 1920.500.50--------------------------------------------------------------0.50-----------
...........................................................................................................................................................................TTCCAGCACCTGTAG......................................... 1590.110.11-------------------------------------------------------------------------0.11