ID: uc010ojx.1_intron_8_0_chr1_43637813_r
GENE: (1)
chr1:43637763-43638000-


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(9)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(26)
CELL-LINE 		(3)
CERVIX 		(2)
HEART 		(7)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(26)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ATGGTTTGCCGCCGGAAGCGGAAGTCCCAATCAAAAGTTGAGCAGTAGCTGTGAGTTGCTGGCGCTGGAGCGATTCGGTGGCACGTGGAGCCACGGCGTGGGAGTAGGGGGCTGAAGGCAGGCAGCAGCGGCCAGGGCCGCCCTCTGCTAGCCGCTTGGGTCTCGGGATACCCCGTTTCTTCCTGTAGGTGTGGGACGTGCGTGCGGCGAGATGGACACTCCCCCGCTCTCGGATTCG
....................................................((((((((........)))))))).(((((.......)))))................................................................................................................................................
..................................................51..........................................95..............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
.........................................................................TTCGGTGGCACGTGGAGC...................................................................................................................................................18113.0013.0010.00-3.00--------------------------------------------------------------------------------------
..............................................................................TGGCACGTGGAGCCACGGCG............................................................................................................................................2018.008.007.001.00---------------------------------------------------------------------------------------
....................................................................................GTGGAGCCACGGCGTGGGA.......................................................................................................................................1917.007.007.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................ATGGACACTCCCCCGCTCTCGGAT...2416.006.00---6.00-------------------------------------------------------------------------------------
....................................................................................................................................................................................................CGTGCGTGCGGCGAGATGGAC.....................2115.005.00---5.00-------------------------------------------------------------------------------------
........................................................................ATTCGGTGGCACGTGGAGC...................................................................................................................................................1914.004.00--2.00-1.00---------------------------1.00--------------------------------------------------------
.........................................................................................GCCACGGCGTGGGAGTAGGGG................................................................................................................................2114.004.00-4.00---------------------------------------------------------------------------------------
..................................................GTGAGTTGCTGGCGCTGGAG........................................................................................................................................................................2014.004.00----2.00-----------------------------2.00------------------------------------------------------
.........................................................................TTCGGTGGCACGTGGAGCC..................................................................................................................................................1914.004.00--2.00----1.00-----------------1.00---------------------------------------------------------------
.........................................................................................GCCACGGCGTGGGAGTAGGG.................................................................................................................................2014.004.00-4.00---------------------------------------------------------------------------------------
..........................................................................................................................................................................................AGGTGTGGGACGTGCGTG..................................1814.004.00-3.00---------------------------------------------------------1.00-----------------------------
.....................................................................................................GAGTAGGGGGCTGAAGGCAGGA...................................................................................................................224.000.00----------------------2.00------------2.00-----------------------------------------------------
......................................................................................................AGTAGGGGGCTGAAGGC.......................................................................................................................1713.003.002.00--------1.00-------------------------------------------------------------------------------
.....................................................................................................GAGTAGGGGGCTGAAGGCA......................................................................................................................1913.003.00-----1.002.00----------------------------------------------------------------------------------
.....................................................................................................GAGTAGGGGGCTGAAGGCAG.....................................................................................................................2013.003.00---------------3.00-------------------------------------------------------------------------
................................................................................................................................................................................TTCTTCCTGTAGGTGTGGGACGTGCGTGCGGC..............................3213.003.00----------3.00------------------------------------------------------------------------------
..............................................................................TGGCACGTGGAGCCACGGC.............................................................................................................................................1913.003.002.00----------------------------------------1.00-----------------------------------------------
...........................................................................CGGTGGCACGTGGAGCCACGGC.............................................................................................................................................2213.003.00--1.00--------1.00---------------------------------------------------------------------1.00-------
....................................................................................GTGGAGCCACGGCGTGGGAG......................................................................................................................................2013.003.001.001.00----------------------------------1.00----------------------------------------------------
..............................................................................TGGCACGTGGAGCCACGG..............................................................................................................................................1813.003.001.00-----------------------------------1.00-------------------------1.00--------------------------
........................................................................ATTCGGTGGCACGTGGAGCCACGGCGTGG.........................................................................................................................................2912.002.00--------------2.00--------------------------------------------------------------------------
.........................................................................TTCGGTGGCACGTGGAG....................................................................................................................................................1712.002.002.00----------------------------------------------------------------------------------------
...............................................................GCTGGAGCGATTCGGTGGCA...........................................................................................................................................................2012.002.00---------------------------------------2.00-------------------------------------------------
........................................................................................................................................................................................GTAGGTGTGGGACGTGCGTGCGGCGACA..........................282.000.00-2.00---------------------------------------------------------------------------------------
...............................................GCTGTGAGTTGCTGGCGCTGGA.........................................................................................................................................................................2212.002.00-2.00---------------------------------------------------------------------------------------
...........................................................TGGCGCTGGAGCGATTCGG................................................................................................................................................................1912.002.00---------2.00-------------------------------------------------------------------------------
..........................................................CTGGCGCTGGAGCGATTCGG................................................................................................................................................................2012.002.00-------------------1.00------------------------------------------------1.00--------------------
...................................................................GAGCGATTCGGTGGCACG.........................................................................................................................................................1812.002.00--1.00--------------1.00-----------------------------------------------------------------------
.......................................................................GATTCGGTGGCACGTGGAGCCACG...............................................................................................................................................2412.002.00---------------------2.00-------------------------------------------------------------------
.........................................GCAGTAGCTGTGAGTTGCTGGCGCTGGAGC.......................................................................................................................................................................3012.002.00------------------2.00----------------------------------------------------------------------
.................................................................................................GTGGGAGTAGGGGGCTGAAG.........................................................................................................................2012.002.00-2.00---------------------------------------------------------------------------------------
.......................................................................GATTCGGTGGCACGTGGAGC...................................................................................................................................................2012.002.00-1.00--1.00------------------------------------------------------------------------------------
...........................................................TGGCGCTGGAGCGATTCGGTGGCA...........................................................................................................................................................2412.002.00----------------------------------------2.00------------------------------------------------
..................................................................GGAGCGATTCGGTGGCACGTG.......................................................................................................................................................2112.002.00-----------------------2.00-----------------------------------------------------------------
..........................................................................................................GGGGGCTGAAGGCAGGCAGCAG..............................................................................................................2212.002.00-2.00---------------------------------------------------------------------------------------
......................................................GTTGCTGGCGCTGGAGCGA.....................................................................................................................................................................1912.002.00-2.00---------------------------------------------------------------------------------------
.......................................................................................GAGCCACGGCGTGGGAGTAG...................................................................................................................................2012.002.002.00----------------------------------------------------------------------------------------
........................................AGCAGTAGCTGTGAGTTGCTGGC...............................................................................................................................................................................2312.002.00-----------2.00-----------------------------------------------------------------------------
.................................................................................................GTGGGAGTAGGGGGCTGCGTG........................................................................................................................211.000.00--------------------------------------------1.00--------------------------------------------
...........................................AGTAGCTGTGAGTTGCTGGCGCTGGAGCGA.....................................................................................................................................................................3011.001.00------------------1.00----------------------------------------------------------------------
.................................AAAGTTGAGCAGTAGCTGTGAGTTGCTGGCG..............................................................................................................................................................................3111.001.00-------------------------------1.00---------------------------------------------------------
.................................................................TGGAGCGATTCGGTGGCACGTGGAGCCA.................................................................................................................................................2811.001.00----------------------------------------------------------------------------1.00------------
.....................................................AGTTGCTGGCGCTGGAG........................................................................................................................................................................1711.001.00---------------------------1.00-------------------------------------------------------------
........................................................................................................................................................................................GTAGGTGTGGGACGTGCGTG..................................2011.001.00-------------------------------------------------1.00---------------------------------------
.............................................................................................CGGCGTGGGAGTAGGGGGCT.............................................................................................................................2011.001.00----------------------------------------------------------1.00------------------------------
....................................................................................................................................................................................TCCTGTAGGTGTGGGACGTGCGG...................................231.000.00----------------------------------------------1.00------------------------------------------
......................................................................CGATTCGGTGGCACGTGGAGCCACGGC.............................................................................................................................................2711.001.00-------------1.00---------------------------------------------------------------------------
..................................................................................................................AAGGCAGGCAGCAGCGGC..........................................................................................................1811.001.00----------------------------------------------------------------------1.00------------------
.............................................................................................CGGCGTGGGAGTAGGGG................................................................................................................................1711.001.00----------------------------1.00------------------------------------------------------------
.........................CCCAATCAAAAGTTGAGCAGTAGCTGTGAG.......................................................................................................................................................................................3011.001.00----------------------------------------------------------------1.00------------------------
.............................ATCAAAAGTTGAGCAGTAGCTGT..........................................................................................................................................................................................2311.001.00--------------1.00--------------------------------------------------------------------------
................................................................CTGGAGCGATTCGGTGGCACGTGG......................................................................................................................................................2411.001.00---------------------------------------------1.00-------------------------------------------
...............................................................................................................CTGAAGGCAGGCAGCAGCGG...........................................................................................................2011.001.00---------------------------------------------------------------------------1.00-------------
................................................................CTGGAGCGATTCGGTGGC............................................................................................................................................................1811.001.00-----------------------------------------------------------------------1.00-----------------
.............................................................................GTGGCACGTGGAGCCACGGC.............................................................................................................................................2011.001.00-------------1.00---------------------------------------------------------------------------
.......................................................................................................GTAGGGGGCTGAAGGCAGGCAGCAGCG............................................................................................................2711.001.00-1.00---------------------------------------------------------------------------------------
.........................................................GCTGGCGCTGGAGCGATTCGG................................................................................................................................................................2111.001.00-----------------1.00-----------------------------------------------------------------------
.......................................................TTGCTGGCGCTGGAGCGATT...................................................................................................................................................................2011.001.00--------------------------1.00--------------------------------------------------------------
.....................................................................GCGATTCGGTGGCACGTGGAG....................................................................................................................................................2111.001.00--1.00--------------------------------------------------------------------------------------
........................................................................................................................GGCAGCAGCGGCCAGGGCTATG................................................................................................221.000.00-----------------------------1.00-----------------------------------------------------------
........................................................................................................TAGGGGGCTGAAGGCAGGCA..................................................................................................................2011.001.00-------------------------------------1.00---------------------------------------------------
.......................................................................................................................................................................................TGTAGGTGTGGGACGTGCGTGCGGCGAGA..........................2911.001.00------------------------------1.00----------------------------------------------------------
......................................................GTTGCTGGCGCTGGAGC.......................................................................................................................................................................1711.001.00--1.00--------------------------------------------------------------------------------------
.........................................................GCTGGCGCTGGAGCGT.....................................................................................................................................................................161.000.00-------------------------1.00---------------------------------------------------------------
..........................................................................................................................CAGCAGCGGCCAGGGCCGCCCTCTGCTAGCCGCTTGGGTCTCGGGATA....................................................................4811.001.00------------------------------------------------------------1.00----------------------------
...............................CAAAAGTTGAGCAGTAGCTGTGAGTT.....................................................................................................................................................................................2611.001.00--------------------------1.00--------------------------------------------------------------
.....................................................................................................GAGTAGGGGGCTGAAGGCAGGC...................................................................................................................2211.001.00--------------------------------------------------1.00--------------------------------------
........................................................................ATTCGGTGGCACGTGGAG....................................................................................................................................................1811.001.00-------------------1.00---------------------------------------------------------------------
.........................................GCAGTAGCTGTGAGTTGCTGGCGCTGGGG........................................................................................................................................................................291.000.00-------------------------------1.00---------------------------------------------------------
.............................................TAGCTGTGAGTTGCTGGCGCT............................................................................................................................................................................2111.001.00-------1.00---------------------------------------------------------------------------------
.........................................................GCTGGCGCTGGAGCGTCG...................................................................................................................................................................181.000.00-------------------------------------------------------------------------------1.00---------
..................................................GTGAGTTGCTGGCGCTGGA.........................................................................................................................................................................1911.001.00------1.00----------------------------------------------------------------------------------
......................................................................................................AGTAGGGGGCTGAAGGCAG.....................................................................................................................1911.001.00-----1.00-----------------------------------------------------------------------------------
.........................................................................................................................................................................................................GTGCGGCGAGATGGACACTCCC...............2211.001.00-------------------------------------------------------------1.00---------------------------
.....................................................................GCGATTCGGTGGCACGTGGA.....................................................................................................................................................2011.001.00------------------------------------------------1.00----------------------------------------
.............................................................................................CGGCGTGGGAGTAGGGGGCTGA...........................................................................................................................2211.001.00-1.00---------------------------------------------------------------------------------------
.....................................................................GCGATTCGGTGGCACGTG.......................................................................................................................................................1811.001.00--------------------1.00--------------------------------------------------------------------
..........................................................................TCGGTGGCACGTGGAGCCACGGCGTGGGAGTAGGGGGCTGAAGGCAGGCAGCAGCGGCCAGGGC....................................................................................................6411.001.00------------------------------------------------------1.00----------------------------------
...........................................................................CGGTGGCACGTGGAGCCACGGCGTGG.........................................................................................................................................2611.001.00----------------------------------------------------1.00------------------------------------
.................................................................................................GTGGGAGTAGGGGGCTGAAGTTTT.....................................................................................................................2411.002.00----------------1.00------------------------------------------------------------------------
..................................................GTGAGTTGCTGGCGCTGGAGCGAT....................................................................................................................................................................2411.001.00--------------------------------1.00--------------------------------------------------------
............................................GTAGCTGTGAGTTGCTGGC...............................................................................................................................................................................1911.001.00-------------------------------------------------------------------1.00---------------------
......................................................................................................AGTAGGGGGCTGAAGGCAGGCAGCAGCGG...........................................................................................................2911.001.00-1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GCGTGCGGCGAGATGGACACTCCC...............2411.001.00-----------------------------------------------------------------------------------1.00-----
............................................................................................................................................................................................................CGGCGAGATGGACACTCC................1811.001.00--------------------------------------------------------------------------------1.00--------
...............................CAAAAGTTGAGCAGTAGCTG...........................................................................................................................................................................................2011.001.001.00----------------------------------------------------------------------------------------
...................................................................................CGTGGAGCCACGGCGTGGGAGT.....................................................................................................................................2211.001.00------------------------1.00----------------------------------------------------------------
............................................................................................................................................................................CCGTTTCTTCCTGTAGG.................................................1711.001.00-1.00---------------------------------------------------------------------------------------
...............................CAAAAGTTGAGCAGTAGCTGTGAGTTGC...................................................................................................................................................................................2811.001.00--1.00--------------------------------------------------------------------------------------
...............................................................................GGCACGTGGAGCCACGGCGTT..........................................................................................................................................211.000.00-------------------------------------------------------------------------1.00---------------
...........................................AGTAGCTGTGAGTTGCTGGCGCTGGAGC.......................................................................................................................................................................2811.001.00-1.00---------------------------------------------------------------------------------------
.....................................................................................................................................................................................CCTGTAGGTGTGGGACGTGCGTGCGGCGAGAT.........................3211.001.00------------1.00----------------------------------------------------------------------------
................AGCGGAAGTCCCAAT...............................................................................................................................................................................................................1511.001.00--------------------------------------------------------------------------1.00--------------
...............................................GCTGTGAGTTGCTGGCGCTGGAGCGA.....................................................................................................................................................................2611.001.00-----1.00-----------------------------------------------------------------------------------
..........................................................................TCGGTGGCACGTGGAGCCACGGCGTGGGAG......................................................................................................................................3011.001.00-------1.00---------------------------------------------------------------------------------
.................................................TGTGAGTTGCTGGCGCTGG..........................................................................................................................................................................1911.001.00----1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................TCCTGTAGGTGTGGGACGTGCGTGC.................................2511.001.00--------1.00--------------------------------------------------------------------------------
...................................................................GAGCGATTCGGTGGCACGTGGAGCC..................................................................................................................................................2511.001.00------------------------1.00----------------------------------------------------------------
...............................................................................................GCGTGGGAGTAGGGGGCTGAAG.........................................................................................................................2211.001.00----------------1.00------------------------------------------------------------------------
..................................................................................ACGTGGAGCCACGGCGTGGG........................................................................................................................................2011.001.00------------1.00----------------------------------------------------------------------------
............................................................................................................GGGCTGAAGGCAGGCAGCAG..............................................................................................................2011.001.00-----1.00-----------------------------------------------------------------------------------
................................AAAAGTTGAGCAGTAGCTGTGAGTTGCTGGC...............................................................................................................................................................................3111.001.00---------------------------1.00-------------------------------------------------------------
..........................................................CTGGCGCTGGAGCGATTCGGT...............................................................................................................................................................2111.001.00--------------------------------------------------------1.00--------------------------------
.............................................TAGCTGTGAGTTGCTGGCGCTGGAG........................................................................................................................................................................2511.001.00--------1.00--------------------------------------------------------------------------------
.....................................................................................................................................................................................................GTGCGTGCGGCGAGATGG.......................1811.001.00----------------------------------------------------------------------------------1.00------
.................................................................TGGAGCGATTCGGTGGCCCGT........................................................................................................................................................211.000.00-----------------------------------------------------1.00-----------------------------------
.........................................................................TTCGGTGGCACGTGGAGCCACGGCG............................................................................................................................................2511.001.00-------------------------------------------1.00---------------------------------------------
....................................................................................................................................................................GGGATACCCCGTTTCTTC........................................................1811.001.00---------------------------------------------------1.00-------------------------------------
..................................................................................................TGGGAGTAGGGGGCTGAAGG........................................................................................................................2011.001.00-----------------------------------------------------------------------------1.00-----------
.............................................................................................................................................................GGGTCTCGGGATACCCCGTTTCTTCCTTT....................................................291.000.00-----------------------------------------------1.00-----------------------------------------
...........................................AGTAGCTGTGAGTTGCTGG................................................................................................................................................................................1911.001.00------1.00----------------------------------------------------------------------------------
...................................................................................................................................................................................TTCCTGTAGGTGTGGGACGTGCGTGC.................................2611.001.00--------1.00--------------------------------------------------------------------------------
....................................................................................GTGGAGCCACGGCGTGGG........................................................................................................................................1811.001.00------------------------------1.00----------------------------------------------------------
...................................AGTTGAGCAGTAGCTGTGAGTTG....................................................................................................................................................................................2311.001.00------------------------------------------------------------------------------1.00----------
.......................................................................................................................................................................................TGTAGGTGTGGGACGTGCGTGCGGCGAGACGG.......................3211.001.00---------------------------------1.00-------------------------------------------------------
.............................................................................................CGGCGTGGGAGTAGGG.................................................................................................................................1611.001.00--1.00--------------------------------------------------------------------------------------
.............................................................................................................................................................................CGTTTCTTCCTGTAGGTGTGGG...........................................2211.001.00-------------------------------------------------------1.00---------------------------------
........................................................................................................................................................................................................CGTGCGGCGAGATGGACA....................1811.001.00---------------------------------------------------------------1.00-------------------------
.................................................................................................................................................................CTCGGGATACCCCGTTTCTTCCTGTAGGTGTGGGACGTGCGTGCGGCGAGATGGACACTCCCCCGCTCTCGGA....7311.001.00--------------------1.00--------------------------------------------------------------------
....................................................................AGCGATTCGGTGGCACGTGGAGCCAC................................................................................................................................................2611.001.00-------------1.00---------------------------------------------------------------------------
.........................................................GCTGGCGCTGGAGCGATTCGGA...............................................................................................................................................................2211.001.00-----1.00-----------------------------------------------------------------------------------
.........................................................................................................................................................GCTTGGGTCTCGGGATACCCCGTTTCTTCCTGTAGGTGTGGGACGTGCGTGCGGCGAGATGGACACTCCCCCG............7311.001.00------------------------------------------------------------------1.00----------------------
...........................................................................CGGTGGCACGTGGAGCCA.................................................................................................................................................1811.001.00-------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................GTGTGGGACGTGCGTGCGGCGAGA..........................2411.001.00------------------------------------------------------------------------1.00----------------
..................................................GTGAGTTGCTGGCGCTGG..........................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................CTTCCTGTAGGTGTGGGACGTGCGTGCGG...............................2911.001.00--1.00--------------------------------------------------------------------------------------
...................................................................................................................................................................................................................ATGGACACTCCCCCGCTCTCGGATTC.2611.001.00--------1.00--------------------------------------------------------------------------------
.......................................................................................................................................................................ATACCCCGTTTCTTCCTG.....................................................1811.001.00--------------------------------------1.00--------------------------------------------------
..........................................................................................CCACGGCGTGGGAGTAGGGGG...............................................................................................................................2111.001.00----1.00------------------------------------------------------------------------------------
...........................................AGTAGCTGTGAGTTGCTGGC...............................................................................................................................................................................2011.001.00---------------------------------------------------------1.00-------------------------------
...........................CAATCAAAAGTTGAGCAGT................................................................................................................................................................................................1911.001.00--------------------------------------1.00--------------------------------------------------
.................................................................................................................................................................................................................AGATGGACACTCCCCCGCTCT........2111.001.00---------------------------------------------------------------------1.00-------------------
.........................................................GCTGGCGCTGGAGCGTCGG..................................................................................................................................................................191.000.00-------------------------------------1.00---------------------------------------------------
.............................................................................GTGGCACGTGGAGCCACGGCGTGGGAGTAG...................................................................................................................................3011.001.00----------------1.00------------------------------------------------------------------------
..........................................................................................CCACGGCGTGGGAGTAGGGGGCTGAA..........................................................................................................................2611.001.00------------------------------------------1.00----------------------------------------------
.......................................................................................................GTAGGGGGCTGAAGGCA......................................................................................................................1761.001.001.00----------------------------------------------------------------------------------------
..................................................GTGAGTTGCTGGCGCTGGGGC.......................................................................................................................................................................2111.001.00----1.00------------------------------------------------------------------------------------
...........................................................................................CACGGCGTGGGAGTAGGGGGCTGAAGGC.......................................................................................................................2811.001.00------------1.00----------------------------------------------------------------------------
...........................................................................................CACGGCGTGGGAGTAGGGG................................................................................................................................1911.001.00----------------------------1.00------------------------------------------------------------
......................................................GTTGCTGGCGCTGGAG........................................................................................................................................................................1620.500.50--------------------------------------------------------------------------------------0.50--
..............................................................................TGGCACGTGGAGCCACG...............................................................................................................................................1720.500.50-----------------------------------------0.50-----------------------------------------------
....................GAAGTCCCAATCAAAAGT........................................................................................................................................................................................................1820.500.50------------------------------------------------------------------------------------0.50----
....................................GTTGAGCAGTAGCTGTGAG.......................................................................................................................................................................................1920.500.50-------------------0.50---------------------------------------------------------------------
.....................................TTGAGCAGTAGCTGTGAG.......................................................................................................................................................................................1820.500.50-------------------------------------------------------------------------------------0.50---
.................................................TGTGAGTTGCTGGCG..............................................................................................................................................................................1520.500.50---------------------------------------------------------------------------------------0.50-
.........................................................................................GCCACGGCGTGGGAG......................................................................................................................................1530.330.33------------------------------------------0.33----------------------------------------------
...............................................................................................GCGTGGGAGTAGGGGGC..............................................................................................................................1730.330.33--0.33--------------------------------------------------------------------------------------
...............................................................................................GCGTGGGAGTAGGGGG...............................................................................................................................1630.330.33----------------------------------------------------------------------------------------0.33
.......................................................................................................GTAGGGGGCTGAAGGC.......................................................................................................................1680.120.12---------0.12-------------------------------------------------------------------------------

Antisense strand
ATGGTTTGCCGCCGGAAGCGGAAGTCCCAATCAAAAGTTGAGCAGTAGCTGTGAGTTGCTGGCGCTGGAGCGATTCGGTGGCACGTGGAGCCACGGCGTGGGAGTAGGGGGCTGAAGGCAGGCAGCAGCGGCCAGGGCCGCCCTCTGCTAGCCGCTTGGGTCTCGGGATACCCCGTTTCTTCCTGTAGGTGTGGGACGTGCGTGCGGCGAGATGGACACTCCCCCGCTCTCGGATTCG
....................................................((((((((........)))))))).(((((.......)))))................................................................................................................................................
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SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM532880(GSM532880)
G659T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
........CCGCCGGAAGCGGAAGCTG................................................................................................................................................................................................................... 191.000.00-----------------1.00-----------------------------------------------------------------------
.........................................................................................................................................................................TACAGGAAGAAACGGGGT................................................... 1811.001.00----1.00------------------------------------------------------------------------------------
.................................................................................................................................GGCCAGGGCCGCCCTCTTCAG........................................................................................ 211.000.00---------------------------------1.00-------------------------------------------------------
................................................................................................CGTGGGAGTAGGGGGGC............................................................................................................................. 171.000.00-----------------------------------------------------------------1.00-----------------------