ID: uc010ogn.1_intron_10_0_chr1_32201992_r
GENE: (1)
chr1:32201942-32202223-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
LIVER 		(2)
OTHER 		(4)
SKIN

Sense strand
GCGGATGCGCACCCGCCTCGTTCGCAAGCGCTTCCTCTGCCTGGGCTGGGGTGAGCAGGGCCAGTGCTGGACTCTGCTGCTGGGCCTTGGTGGGCAGGGGCAGCAAGAGAGGTTCAGCTTTGGCCCTGGCCCAGCTCTCTGGGCACAGGGGTCAGCTGGGATGGGAGTCTGGGAGAACAAGGGGTCCCTGAAGACCAGCAACCATCTCACTCTGGCACCCCTGCTCCCCCAGGTCTGCCTGCCCTGGTGGTGGCCGTGTCTGTTGGCTTTACCCGAACGAAA
...................................................................................................................................................................(((.((((((.((...((((((.((.(((((..........)))...)).)).))))))..)).)))))))))..............................................
..................................................................................................................................................................163........................................................................238..........................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189782SRR189787SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337SRR343334SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR343336DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCCCTGA...........................................................................................2416.006.00-1.00-1.001.00----------1.001.00-----1.00-----------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAGTT................................................2216.002.001.00--1.00-3.00-----------------------1.00----------------
......................................................................................................................................................................GTCTGGGAGAACAAGGGGTCC...............................................................................................2115.005.00-3.00------2.00-------------------------------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCCCTGT...........................................................................................244.000.00-------1.00-------------1.00----------------1.00-1.00-----
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAGT.................................................2113.002.002.00---------------------------------1.00-----------
.....................................................................................................................................................................................................................................................................GTTGGCTTTACCCGAAG....173.000.00--------------1.00--------1.00--------1.00-------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAGA.................................................2113.002.00-2.00---------------------------------1.00----------
...................................................................TGGACTCTGCTGCTG........................................................................................................................................................................................................1503.003.00------------------1.00-----1.00-----1.00---------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCCTTT............................................................................................2312.001.00-----------2.00----------------------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAGAGA...............................................2312.002.00-2.00--------------------------------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAGTTTT..............................................2412.002.00-------1.00---------1.00----------------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAG..................................................2012.002.00------------2.00---------------------------------
...................................................................................................................................................................................................................CTGGCACCCCTGCTCCCCCAGTTT...............................................242.000.00--2.00-------------------------------------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGT.................................................................................................1812.002.001.00--------1.00------------------------------------
.....................................................................................................................................................................................................................................................................GTTGGCTTTACCCGAAGG...182.000.00-------------2.00--------------------------------
...................................................................................................................................................................................................................CTGGCACCCCTGCTCCCCCATT.................................................221.000.00--1.00-------------------------------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAGACA...............................................2311.002.00--------------------1.00-------------------------
................................TCCTCTGCCTGGGCTGGGGGC.....................................................................................................................................................................................................................................211.000.00-----------------------------------------1.00----
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCCCTGAAT.........................................................................................261.000.001.00---------------------------------------------
...................................................................................................................................................................................................................CTGGCACCCCTGCTCCCCCAGTT................................................231.000.00--1.00-------------------------------------------
.........................AAGCGCTTCCTCTGCAG................................................................................................................................................................................................................................................171.000.00---1.00------------------------------------------
...................................................................................................................................................................................................................CTGGCACCCCTGCTCCCCCAGTTAT..............................................251.000.00--1.00-------------------------------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCATTT................................................221.000.001.00---------------------------------------------
...................................................................TGGACTCTGCTGCTGTTTT....................................................................................................................................................................................................1901.003.00----1.00-----------------------------------------
.................................................................................................................................................................TGGGAGTCTGGGAGAACAACTG...................................................................................................221.000.00---------1.00------------------------------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTC................................................................................................1911.001.00---------------------------1.00------------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCCCTAT...........................................................................................2411.001.00---------------------------------------1.00------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAGTTA...............................................2311.002.001.00---------------------------------------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCC...............................................................................................2011.001.00-1.00--------------------------------------------
......................................................................................................................................................................GTCTGGGAGAACAAGGGGTCCCTGA...........................................................................................2511.001.00------------------------------------1.00---------
.........................................................................................................................................................................TGGGAGAACAAGGGGTCCCTGAAAT........................................................................................251.000.00------------------------------------------1.00---
.........CACCCGCCTCGTTCGCAAGCGCTTCC.......................................................................................................................................................................................................................................................2611.001.001.00---------------------------------------------
.....................................................................................................................................GCTCTCTGGGCACAGGGGTCAGC..............................................................................................................................2311.001.001.00---------------------------------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCAAT.................................................211.000.00-------------------------------1.00--------------
...................................................................................................................................................................................................................................................CTGGTGGTGGCCGTGTCTGTTGGC...............2411.001.001.00---------------------------------------------
..................................................................................................................................................................................................................................................................TCTGTTGGCTTTACCCTATA....201.000.00---------------------------------1.00------------
..................................................................................................................................................................................................................................................CCTGGTGGTGGCCGTGGCT.....................191.000.00--------------------------1.00-------------------
..............................CTTCCTCTGCCTGGGATTC.........................................................................................................................................................................................................................................191.000.00-------------------------1.00--------------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCCCT.............................................................................................2211.001.00---1.00------------------------------------------
.......................................................................................................................................................................TCTGGGAGAACAAGGGGTCCTTG............................................................................................2311.001.00---1.00------------------------------------------
...................................................................................................................................................................................................................CTGGCACCCCTGCTCCCCCAGA.................................................221.000.00--1.00-------------------------------------------
....................................................................................................................................................................................................................TGGCACCCCTGCTCCCCCATT.................................................211.000.00-------------------------------------1.00--------
......................................................................................................................................................................GTCTGGGAGAACAAGGGG..................................................................................................1820.500.500.50---------------------------------------------
..............................CTTCCTCTGCCTGGGCTGGGGTGAG...................................................................................................................................................................................................................................2520.500.50--0.50-------------------------------------------

Antisense strand
GCGGATGCGCACCCGCCTCGTTCGCAAGCGCTTCCTCTGCCTGGGCTGGGGTGAGCAGGGCCAGTGCTGGACTCTGCTGCTGGGCCTTGGTGGGCAGGGGCAGCAAGAGAGGTTCAGCTTTGGCCCTGGCCCAGCTCTCTGGGCACAGGGGTCAGCTGGGATGGGAGTCTGGGAGAACAAGGGGTCCCTGAAGACCAGCAACCATCTCACTCTGGCACCCCTGCTCCCCCAGGTCTGCCTGCCCTGGTGGTGGCCGTGTCTGTTGGCTTTACCCGAACGAAA
...................................................................................................................................................................(((.((((((.((...((((((.((.(((((..........)))...)).)).))))))..)).)))))))))..............................................
..................................................................................................................................................................163........................................................................238..........................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189782SRR189787SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337SRR343334SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR343336DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................CCTGGGCTGGGGTGAGCGCT............................................................................................................................................................................................................................... 202.000.00----1.00-----1.00-----------------------------------
..........ACCCGCCTCGTTCGCAGTT............................................................................................................................................................................................................................................................. 191.000.00------1.00---------------------------------------
.......................................CCTGGGCTGGGGTGAGCTCG............................................................................................................................................................................................................................... 201.000.00----------1.00-----------------------------------
.................................................GGTGAGCAGGGCCAGTGG....................................................................................................................................................................................................................... 181.000.00----------------------------1.00-----------------
....................................................................................................................................AGCTCTCTGGGCACAGGA.................................................................................................................................... 181.000.00-------------------1.00--------------------------
........................................................................................................................................................................................................................................................GGTGGCCGTGTCTGTGCCG............... 191.000.00------1.00---------------------------------------
.............................................................................................................................................................................................................................AGGCAGACCTGGGGGAGCA.......................................... 1920.500.50-------------------------------------------0.50--
.......................GCCCAGGCAGAGGAAGCGCTTGC............................................................................................................................................................................................................................................ 2320.500.50--------------------------------------------0.50-
...........................CCAGGCAGAGGAAGCGC.............................................................................................................................................................................................................................................. 1790.110.11---------------------------------------------0.11