ID: uc010ogh.1_intron_0_0_chr1_31886912_f.5p
GENE: (1)
chr1:31886862-31887111+


(1)
BRAIN
(8)
BREAST
(5)
CELL-LINE
(8)
CERVIX
(7)
HEART
(2)
LIVER
(1)
OTHER
(27)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGGGAGCGGAGGGAGCCCCGGACTTTCTTAGCTGCCCTCGAGTGAGGCGGGTGCGGGTCGTCACGGACCACCGGGCGGAACTCTGGGTTGGGAGAGCAGGAATCGAGGGAGGTTCGGGTGTGCGCGGGGAGTGCCCGGTCGCGGGTTCGGGACCTGTGGGGAGGCCAACCTCTGTTCTGTAGCTGCAGCCGCAGAGGGGAGGGGCTCCAGCAAGACCCCGGCTGGGAGGCCCGTTCTCCCTTCCCTTTCC
....................................................................................(((((....((((..(((((......)))))..(((.((.((((.....)))))))))..))))..)))))...............................................................................................
.................................................................................82..........................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336GSM339995(GSM339995)
hues6NP. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
GSM532887(GSM532887)
G761N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
......................................................................................GTTGGGAGAGCAGGACTGT.................................................................................................................................................1953.000.006.006.004.003.00--4.002.003.00--2.00-2.001.002.002.001.00-2.002.001.00--1.001.00--1.00-1.00---1.00----1.00---1.001.00----1.00-1.00------------
.....................................................................................................................................................................................................................................CCCGTTCTCCCTTCCCCCGC.209.000.00-----3.00-1.00---------1.001.00-------------1.001.00-------------1.00----------------
.......................................................................................................................................CGGTCGCGGGTTCGGTCCC................................................................................................198.000.00----4.00---------1.00------------1.00--------------1.00--1.00------------------
......................................................................................................................................................................................................................................CCGTTCTCCCTTCCCCCGC.193.000.00---------3.00------------------------------------------------------
.......................................................................................................................................CGGTCGCGGGTTCGGTCC.................................................................................................183.000.00----------1.00---------------1.00---------------------1.00---------------
.....................................................................................................................................................................................................................................CCCGTTCTCCCTTCCCCCG..192.000.00------------------1.00------------1.00--------------------------------
....................................CTCGAGTGAGGCGGGCAAG...................................................................................................................................................................................................191.000.00----------------------------------------------1.00-----------------
..........................................................................................................................................................................TCTGTTCTGTAGCTGCAG..............................................................1811.001.00----------1.00-----------------------------------------------------
........................................................................................TGGGAGAGCAGGAATAATG...............................................................................................................................................191.000.00--------------------------------------1.00-------------------------
......................................................................................................................................CCGGTCGCGGGTTCGAG...................................................................................................171.000.00-----------------------------------------1.00----------------------
......................................................................................GTTGGGAGAGCAGGACTGC.................................................................................................................................................191.000.00--1.00-------------------------------------------------------------
......................................................................................................................................................................................................................................CCGTTCTCCCTTCCCCCG..181.000.00-----1.00----------------------------------------------------------
.........................................................................................................................................GTCGCGGGTTCGGGAACGC..............................................................................................191.000.00----------------------1.00-----------------------------------------
..................................................................ACCACCGGGCGGAACCACC.....................................................................................................................................................................191.000.00------------1.00---------------------------------------------------
...........................................................................................................................................................................CTGTTCTGTAGCTGCAGC.............................................................1811.001.00---1.00------------------------------------------------------------
....................................................................................GGGTTGGGAGAGCAGCTG....................................................................................................................................................181.000.00----------------------------------------------------1.00-----------
........................................................................................................................................GGTCGCGGGTTCGGGC..................................................................................................161.000.00-------1.00--------------------------------------------------------
............................................................................................................................................................................................CCGCAGAGGGGAGGGGCTCC..........................................2011.001.00--------------------------------------------------1.00-------------
..........................................................CGTCACGGACCACCGGGCGGA...........................................................................................................................................................................2111.001.00----------------------------------------1.00-----------------------
........................................................................................................................................GGTCGCGGGTTCGGGCCC................................................................................................181.000.00-----------------------------------1.00----------------------------
......CGGAGGGAGCCCCGG.....................................................................................................................................................................................................................................1570.570.57---0.14-----------------0.14---------------------------------0.14-----0.14--
......CGGAGGGAGCCCCGGGGA..................................................................................................................................................................................................................................1870.570.57----------0.14----------------------------------------------0.140.14---0.14-
.........................................................................................................................................................................................CAGCCGCAGAGGGGAGG................................................1730.330.33-----------------------------------------------------0.33----------
............................................................................................................................................................................TGTTCTGTAGCTGCAG..............................................................1640.250.25------------------------------------------------------0.25---------
......CGGAGGGAGCCCCGGCG...................................................................................................................................................................................................................................1770.140.57--------------------------------------------------------0.14-------
......CGGAGGGAGCCCCGGGCAG.................................................................................................................................................................................................................................1970.140.57---------------------------------------------------------------0.14
......CGGAGGGAGCCCCGGGT...................................................................................................................................................................................................................................1770.140.57-----------------------------------------------------------0.14----
......CGGAGGGAGCCCCGGTCG..................................................................................................................................................................................................................................1870.140.57------------------------------------------------------------0.14---

Antisense strand
TGGGAGCGGAGGGAGCCCCGGACTTTCTTAGCTGCCCTCGAGTGAGGCGGGTGCGGGTCGTCACGGACCACCGGGCGGAACTCTGGGTTGGGAGAGCAGGAATCGAGGGAGGTTCGGGTGTGCGCGGGGAGTGCCCGGTCGCGGGTTCGGGACCTGTGGGGAGGCCAACCTCTGTTCTGTAGCTGCAGCCGCAGAGGGGAGGGGCTCCAGCAAGACCCCGGCTGGGAGGCCCGTTCTCCCTTCCCTTTCC
....................................................................................(((((....((((..(((((......)))))..(((.((.((((.....)))))))))..))))..)))))...............................................................................................
.................................................................................82..........................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577741(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR040021(GSM532906)
G761T_2. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343336GSM339995(GSM339995)
hues6NP. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
GSM532887(GSM532887)
G761N. (cervix)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
........................................................................................................................................................................................................................................GTTCTCCCTTCCCTTTCTG 191.000.00-----------------------1.00----------------------------------------
.......................................................................................................................................................................GCAGCTACAGAACAGAGGT................................................................ 1911.001.00------------------------------------1.00---------------------------
.........................................................................................................................................................................................................................................TTCTCCCTTCCCTTTTGA 181.000.00-----------------------------1.00----------------------------------
...........................................GAGGCGGGTGCGGGTCGTCACGGTGCC.................................................................................................................................................................................... 271.000.00-------------------------------------1.00--------------------------
.............................................................................GAACTCTGGGTTGGGG............................................................................................................................................................. 161.000.00------------1.00---------------------------------------------------