ID: uc010oer.1_intron_1_0_chr1_26127652_f.3p
GENE: (2)
chr1:26128307-26128556+


(1)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
HELA
(1)
LIVER
(1)
OTHER
(4)
SKIN
(1)
XRN.ip

Sense strand
CTGAGAGACTAAGGCACAGGCAGGCTCCCCAGTTTCCCAAGCTAGAAAGGTGCGGAGCCAGGGCTAGAACTGGGGCCATCTGGCTTCAGGGTCCTGCACCAGCTCACAGGTTTCAGTAGAGAAAAGAAATGCACAGTGACGAATATGCAGTAGATTTCCAATAGACAGCAGCTATAACTTTTTTTTTTTTTTTGAGACAGGGTCTTGTTCTGTCACCCAGACTGGAGTGCAGTGGTGCAGTCACAGCTCA
...................................................((((.((.((((((....(((..(((....)))..))))))))))).)).))......(((((((.((((((((((((.....(((........(((.((..((.....))..)).)))......))))))))))))))))))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189787SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040029(GSM532914)
G026T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
..................................................TGCGGAGCCAGGGCTAACAG....................................................................................................................................................................................2021.000.00-17.00---3.00-1.00------------------
................................................................................................................................................................................ACTTTTTTTTTTTTTTTGAGCCGG..................................................242.000.001.00-1.00-----------------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGCGTC..............242.000.00--2.00-----------------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTTTTTAG........................................................232.000.00----2.00---------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA............................................272.000.00------2.00-------------------
...................................................................................................................................................................................................................................TGCAGTGGTGCAGTCACAGCCAC231.000.001.00-------------------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGGGCA..............241.000.001.00-------------------------
..........................................................................................................................................................................................................................AGACTGGAGTGCAGTGGTGCTAGT........241.000.00-----------1.00--------------
...............................................................................................................................................................................AACTTTTTTTTTTTTTTTGAGACTGCG................................................271.000.001.00-------------------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTTTAG..........................................................211.000.00---1.00----------------------
..........................................................................................................................................................................................................................AGACTGGAGTGCAGTGGTGCAGCTGT......261.000.00--1.00-----------------------
.................................................................................................................................................TGCAGTAGATTTCCAATAGACAG..................................................................................2311.001.00--------1.00-----------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGGGGA..............241.000.001.00-------------------------
..................................................TGCGGAGCCAGGGCTAACAC....................................................................................................................................................................................201.000.00-1.00------------------------
............................................................................................................................................................................................................................ACTGGAGTGCAGTGGTGCAGTCCTGG....261.000.001.00-------------------------
..................................................TGCGGAGCCAGGGCTACCAG....................................................................................................................................................................................201.000.00-----------------1.00--------
..................................................TGCGGAGCCAGGGCTAACA.....................................................................................................................................................................................191.000.00-1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG............................................281.000.001.00-------------------------
....................................................................................................................................................................ACAGCAGCTATAACTTTTTTTTTTTTG...........................................................271.000.00----1.00---------------------
..................................................TGCGGAGCCAGGGCTAAAAG....................................................................................................................................................................................201.000.00-----------------------1.00--
................................................................................................................................................................................ACTTTTTTTTTTTTTTTGAGCAGG..................................................241.000.001.00-------------------------
.................................................................................................................................................TGCAGTAGATTTCCAATAGACAGC.................................................................................2411.001.00----------------------1.00---
.....................................................................................................................................................................................TTTTTTTTTTTTGAGACAGGGTCTTGTCCC.......................................301.000.001.00-------------------------
................................................................................................................................................................................ACTTTTTTTTTTTTTTTGAGACCAGG................................................261.000.00--1.00-----------------------
................................................................................................................................................................................ACTTTTTTTTTTTTTTTGATTGT...................................................231.000.00-------------1.00------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTAG............................................................191.000.00----1.00---------------------
.............................................................................................................................................................................................................TGTTCTGTCACCCAGACTGGAGTGCGGC.................281.000.001.00-------------------------
.............................................................................................................................................................................ATAACTTTTTTTTTTTTTTCTGG......................................................231.000.00--1.00-----------------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGCGC...............231.000.001.00-------------------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTTTTTTATT......................................................251.000.00---1.00----------------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTTTTTTTAT......................................................251.000.00---1.00----------------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGTGCGCC............261.000.001.00-------------------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGCGGG..............241.000.001.00-------------------------
..........................................................................................................................................................................................................................AGACTGGAGTGCAGTGGTGCAGCTG.......251.000.00--1.00-----------------------
......................................................................................................................................................................................................................ACCCAGACTGGAGTGCAGTGGTGCA...........2501.001.00---------------------1.00----
...........................................................................................................................................................................CTATAACTTTTTTTTTTTTTTTTTA......................................................251.000.00----1.00---------------------
................................................................................................................................................................................ACTTTTTTTTTTTTTTTGAGCCCG..................................................241.000.001.00-------------------------
........................................................................................................................................................................................................................CCAGACTGGAGTGCAGAGCG..............201.000.00-------------------------1.00
...................................................................................................................GTAGAGAAAAGAAATGCACAGTGACGAATAT........................................................................................................3111.001.00----------1.00---------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTTAG...........................................................201.000.00---1.00----------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG.............................................261.000.00---1.00----------------------
................................................................................................................................................................................ACTTTTTTTTTTTTTTTGAGACAGGCC...............................................271.000.001.00-------------------------
...........................................................................................................................................................................................TTTTTTGAGACAGGGTCTTGAAG........................................231.000.00------1.00-------------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTTAT...........................................................201.000.00---1.00----------------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGCGGA..............241.000.001.00-------------------------
..................................................TGCGGAGCCAGGGCTAGCAG....................................................................................................................................................................................201.000.00-1.00------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................271.000.001.00-------------------------
...........................................................................................................................................................................CTATAACTTTTTTTTTTTTTTTTTAG.....................................................261.000.00---1.00----------------------
................................................................................................................................................................................ACTTTTTTTTTTTTTTTGAGACAGGGTCTTTCC.........................................331.000.00--1.00-----------------------
...................................................................................................................................................CAGTAGATTTCCAATAGACAGCAGC..............................................................................2511.001.00------------------1.00-------
....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................261.000.00--1.00-----------------------
.........TAAGGCACAGGCAGGCTCCC.............................................................................................................................................................................................................................2011.001.00--1.00-----------------------
..........................................................................................................................................................................................................................AGACTGGAGTGCAGTGGTGGAGC.........231.000.00--1.00-----------------------
......................................................................................................................................................................................................................ACCCAGACTGGAGTGCAGTGGTGCAGCCG.......291.000.001.00-------------------------
.................................................................................................................................................................................CTTTTTTTTTTTTTTTGAGACAGGGCTC.............................................281.000.001.00-------------------------
..........AAGGCACAGGCAGGCTCCCCAGTTTCCC....................................................................................................................................................................................................................2811.001.00--1.00-----------------------
...............................................................................................................................................................................AACTTTTTTTTTTTTTTTGAGACAGGGGC..............................................291.000.001.00-------------------------
............................................................................................................................................................................................................................ACTGGAGTGCAGTGGTGCAGTCACAGC...2740.250.250.25-------------------------

Antisense strand
CTGAGAGACTAAGGCACAGGCAGGCTCCCCAGTTTCCCAAGCTAGAAAGGTGCGGAGCCAGGGCTAGAACTGGGGCCATCTGGCTTCAGGGTCCTGCACCAGCTCACAGGTTTCAGTAGAGAAAAGAAATGCACAGTGACGAATATGCAGTAGATTTCCAATAGACAGCAGCTATAACTTTTTTTTTTTTTTTGAGACAGGGTCTTGTTCTGTCACCCAGACTGGAGTGCAGTGGTGCAGTCACAGCTCA
...................................................((((.((.((((((....(((..(((....)))..))))))))))).)).))......(((((((.((((((((((((.....(((........(((.((..((.....))..)).)))......))))))))))))))))))))))....................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189787SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040029(GSM532914)
G026T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
........................................................................................................................................................................CAGCTATAACTTTTTTTTTGA............................................................. 212.000.00--------------1.00---------1.00-
.......................................................................................................................................................................................................................CCCAGACTGGAGTGCAGTGGTGCAGTGGAC..... 302.000.00--2.00-----------------------
..............................................AAGGTGCGGAGCCAGACG.......................................................................................................................................................................................... 182.000.00---------1.00----------1.00-----
...................................................................................................................................................CAGTAGATTTCCAATGGC..................................................................................... 181.000.00-------------------1.00------
...............................................................................................................................................................................................................................GGAGTGCAGTGGTGCAGTCAGGGC... 241.000.001.00-------------------------
....................................................................................................................................................................................................................TCACCCAGACTGGAGTGCAGTGGTGTATA......... 291.000.00----------------1.00---------
.................................................................................................................CAGTAGAGAAAAGAAACTAA..................................................................................................................... 201.000.00-1.00------------------------
.......................................................................................................................AGAAAAGAAATGCACATTGA............................................................................................................... 201.000.001.00-------------------------
........................................................................................TGTGAGCTGGTGCAGGACCC.............................................................................................................................................. 2011.001.00------------1.00-------------
..............................................AAGGTGCGGAGCCAGA............................................................................................................................................................................................ 161.000.00-------1.00------------------
...........................................................................................................................................................................................................................GACTGGAGTGCAGTGGTGGGC.......... 211.000.001.00-------------------------
.................................................................................................................CAGTAGAGAAAAGAACTAA...................................................................................................................... 191.000.00-1.00------------------------
...........AGGCACAGGCAGGCTCCCCAGTAGTC..................................................................................................................................................................................................................... 261.000.001.00-------------------------
......................................................................................CAGGGTCCTGCACCAGC................................................................................................................................................... 171.000.00---------------1.00----------
.............................................................................................................................................................................................................................CTGGAGTGCAGTGGTGCAGTGGGC..... 241.000.001.00-------------------------