ID: uc010oem.1_intron_7_0_chr1_24987291_f.5p
GENE: SRRM1(8)
chr1:24987241-24987490+


(3)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(27)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(2)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(13)
SKIN 		(2)
XRN.ip

Sense strand
ATCCCCTTCACCAGCACCGAAGCCTAGAAAAGTAGAGTTATCTGAATCGGGTAAGTTTGTTGTTTTTTTTTGTGATTTTGGTTTGTTTGTTTTTGTTTTTCTTAAAGCTGATTTTGATTTTTTGCACATTTGGTCATCCCCTTCTGCTTGAAGATTAAGTATAGGGTAAGAGCTAAGACTCTGAAGGCAGACAGACTTGGGTGGAATCCCCCATTCCAGAATTTAACTGTTTCTGTTTTAATTAACTTAT
..........................................................................(((..(((((((((((((((((((((((((...(((..((((((((((.(((.....((....)).....)))..))))))))))..)))..)))))...)))))...)))))))))))))))..)))................................................
.....................................................................70......................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532930(GSM532930)
G702T. (cervix)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
............................AAAGTAGAGTTATCTGAATCGGA.......................................................................................................................................................................................................23149.002.0028.00--17.00---1.001.00---1.00-----------------------1.00-------------------------
............................AAAGTAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................26122.002.0013.00--2.00-1.00-----------1.00-2.00---------1.00---------------1.00------1.00---------
............................AAAGTAGAGTTATCTGAATCGGAAG.....................................................................................................................................................................................................25114.002.008.00--6.00----------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTCTC.....................................................................................................................................................2712.000.00-7.005.00-----------------------------------------------------------
.............................AAGTAGAGTTATCTGAATCGGA.......................................................................................................................................................................................................22110.001.006.00--1.002.00-------1.00-------------------------------------------------
...........................AAAAGTAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................2719.001.004.00--3.00-------------1.00------1.00-------------------------------------
.................................AGAGTTATCTGAATCGG........................................................................................................................................................................................................1719.009.003.00-----3.00-2.00----------------------------------------1.00------------
...........................AAAAGTAGAGTTATCTGAATCGGA.......................................................................................................................................................................................................2419.001.003.00--2.00---1.00------1.00-------1.00--1.00------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTCTCT....................................................................................................................................................288.000.00-6.002.00-----------------------------------------------------------
..................GAAGCCTAGAAAAGTAGA......................................................................................................................................................................................................................1817.007.00----------4.00----3.00----------------------------------------------
.............................AAGTAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................2517.001.001.00--6.00----------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTTCTC...................................................................................................................................................2917.001.00-1.006.00-----------------------------------------------------------
..............................AGTAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................2417.003.003.00----1.00--------------2.00--------------------------------1.00--------
................................TAGAGTTATCTGAATCGG........................................................................................................................................................................................................1817.007.00------1.00-1.00---------2.00--1.00-----2.00----------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTCTTC.....................................................................................................................................................276.000.00-4.002.00-----------------------------------------------------------
..............................AGTAGAGTTATCTGAATCGGAA......................................................................................................................................................................................................2216.003.004.00--2.00----------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTCCTC.....................................................................................................................................................274.000.00-4.00------------------------------------------------------------
..............................AGTAGAGTTATCTGAATCGGA.......................................................................................................................................................................................................2114.003.003.00------1.00------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTCCTT...................................................................................................................................................294.000.00-1.003.00-----------------------------------------------------------
.................................AGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................2114.009.001.00--3.00----------------------------------------------------------
..............................AGTAGAGTTATCTGAATCGGAAG.....................................................................................................................................................................................................2313.003.002.00---------------------1.00---------------------------------------
........................................................................TGATTTTGGTTTGTTTGTTTTTGTTCTTC.....................................................................................................................................................293.000.00-2.001.00-----------------------------------------------------------
........................................................................TGATTTTGGTTTGTTTGTTTTTGTTTCTCT....................................................................................................................................................303.000.00-2.001.00-----------------------------------------------------------
..............................AGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2013.003.001.00------------2.00------------------------------------------------
...........................AAAAGTAGAGTTATCTGAATCGGAAG.....................................................................................................................................................................................................2613.001.003.00-------------------------------------------------------------
........................TAGAAAAGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2613.003.00-----1.00----------------------1.00-------------------------1.00-------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTTC.....................................................................................................................................................2713.003.00-1.002.00-----------------------------------------------------------
......................CCTAGAAAAGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2813.003.00---------------------1.00----1.00-------1.00---------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGCT.........................................................................................................................................................233.000.00--3.00-----------------------------------------------------------
...........................................................................................................................................................................................CAGACAGACTTGGGTGGAATC..........................................2113.003.00---------3.00----------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTCC.....................................................................................................................................................273.000.00-3.00------------------------------------------------------------
...............................GTAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................233.000.003.00-------------------------------------------------------------
...............................................................................GGTTTGTTTGTTTTTGTTTATTT....................................................................................................................................................232.000.00-2.00------------------------------------------------------------
..................................GAGTTATCTGAATCGG........................................................................................................................................................................................................1622.002.00------------------0.50----------------------------------------0.500.500.50
............................AAAGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2212.002.00---2.00----------------------------------------------------------
........................................................................TGATTTTGGTTTGTTTGTTTTTGTTTTTC.....................................................................................................................................................2912.002.00-1.001.00-----------------------------------------------------------
........................................................................TGATTTTGGTTTGTTTGTTTTTGTTTCT......................................................................................................................................................282.000.00-2.00------------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTC.......................................................................................................................................................252.000.00--2.00-----------------------------------------------------------
........................TAGAAAAGTAGAGTTATCTGAATCGGA.......................................................................................................................................................................................................2712.003.00----2.00---------------------------------------------------------
..........................GAAAAGTAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................282.000.00-----1.00------------------1.00-------------------------------------
............................................................................TTTGGTTTGTTTGTTTTTGTTTCTC.....................................................................................................................................................252.000.00-1.001.00-----------------------------------------------------------
.............................................................................TTGGTTTGTTTGTTTTTGTTTTTCC....................................................................................................................................................252.000.00--2.00-----------------------------------------------------------
.............................AAGTAGAGTTATCTGAATCGGAAG.....................................................................................................................................................................................................2412.001.00-----1.00--------------------1.00-----------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTCT.......................................................................................................................................................252.000.00-2.00------------------------------------------------------------
..............................................................TTTTTTTTTGTGATTTTGGT........................................................................................................................................................................2012.002.00-1.00---------1.00--------------------------------------------------
......................................................................................................................................................................................GAAGGCAGACAGACTTGGGT................................................2012.002.00----2.00---------------------------------------------------------
........................................................................................................................................................................AGAGCTAAGACTCTGAAGGCAGA...........................................................2312.002.00----2.00---------------------------------------------------------
.......................CTAGAAAAGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2712.002.00----1.00---------------------------------------------1.00-----------
...........................................................................TTTTGGTTTGTTTGTTTTTGTTTCTC.....................................................................................................................................................262.000.00-2.00------------------------------------------------------------
....CCTTCACCAGCACCGAAGCC..................................................................................................................................................................................................................................2012.002.00----------------2.00---------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTTCC....................................................................................................................................................2812.003.00-1.001.00-----------------------------------------------------------
........................................................................TGATTTTGGTTTGTTTGTTTTTGTTTTTCCT...................................................................................................................................................3112.002.00-2.00------------------------------------------------------------
..............................................................................TGGTTTGTTTGTTTTTGTTTTCC.....................................................................................................................................................232.000.00--2.00-----------------------------------------------------------
............................................................................................................TGATTTTGATTTTTTGCACATTTGGTC...................................................................................................................2712.002.00--2.00-----------------------------------------------------------
..........................................................................................................................................................................AGCTAAGACTCTGAAGGCAGACAGACTTGGGT................................................3211.001.00-------------1.00------------------------------------------------
......................................................GTTTGTTGTTTTTTTTTGGG................................................................................................................................................................................201.000.00-1.00------------------------------------------------------------
..........................GAAAAGTAGAGTTATCTGAATCGGAA......................................................................................................................................................................................................261.000.00-----1.00--------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTC.........................................................................................................................................................231.000.00--1.00-----------------------------------------------------------
.................................................................TTTTTTGTGATTTTGGTTTGTTTGTTTC.............................................................................................................................................................281.000.00-1.00------------------------------------------------------------
............................AAAGTAGAGTTATCTGAATCGGAAA.....................................................................................................................................................................................................2511.002.00-----------------1.00--------------------------------------------
............................AAAGTAGAGTTATCTGAATCGGAA......................................................................................................................................................................................................2411.002.001.00-------------------------------------------------------------
...............ACCGAAGCCTAGAAAAG..........................................................................................................................................................................................................................1711.001.00-------------------------------------------1.00------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTCCT....................................................................................................................................................281.000.00-1.00------------------------------------------------------------
........................TAGAAAAGTAGAGTTATCTGAATCGGAAG.....................................................................................................................................................................................................2911.003.00----1.00---------------------------------------------------------
...........................................................................TTTTGGTTTGTTTGTTTTTGTGCGG......................................................................................................................................................251.000.00--1.00-----------------------------------------------------------
.....................................TTATCTGAATCGGGTAAGTTTGTTGTTTTT.......................................................................................................................................................................................3011.001.00-------------------------------1.00------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTCTT.......................................................................................................................................................251.000.00--1.00-----------------------------------------------------------
.............................AAGTAGAGTTATCTGAATCGGAA......................................................................................................................................................................................................2311.001.00----1.00---------------------------------------------------------
......................CCTAGAAAAGTAGAGTTATCT...............................................................................................................................................................................................................2111.001.00-------------------------1.00------------------------------------
...........................AAAAGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2311.001.00---1.00----------------------------------------------------------
...........................................................................................................CTGATTTTGATTTTTGTTT............................................................................................................................191.000.00-----------1.00--------------------------------------------------
.....................GCCTAGAAAAGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2911.001.00------1.00-------------------------------------------------------
.......................CTAGAAAAGTAGAGTTATCTG..............................................................................................................................................................................................................2111.001.00-----------------------------------------1.00--------------------
...............................................................................GGTTTGTTTGTTTTTGTTTTCGAG...................................................................................................................................................241.000.00-1.00------------------------------------------------------------
...................................................................................TGTTTGTTTTTGTTTTTCGC...................................................................................................................................................201.000.00--1.00-----------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTATT.........................................................................................................................................................231.000.00-----------1.00--------------------------------------------------
...................AAGCCTAGAAAAGTAGAGTTATCTGAAT...........................................................................................................................................................................................................2811.001.00--------------1.00-----------------------------------------------
..................................................................................TTGTTTGTTTTTGTTTTTCGAGC.................................................................................................................................................231.000.00--1.00-----------------------------------------------------------
...........................................................................TTTTGGTTTGTTTGTTTTTGTTTTCCTT...................................................................................................................................................281.000.00-1.00------------------------------------------------------------
..........................................................................................................................................................TTAAGTATAGGGTAAGAGCTCTTG........................................................................241.000.00-----------------------------------------------1.00--------------
.........................AGAAAAGTAGAGTTATCT...............................................................................................................................................................................................................1811.001.00----1.00---------------------------------------------------------
..CCCCTTCACCAGCACCGA......................................................................................................................................................................................................................................1811.001.00-----------------------------------1.00--------------------------
..................................................................................TTGTTTGTTTTTGTTTTTCTGGGG................................................................................................................................................241.000.00--1.00-----------------------------------------------------------
.........................................................TGTTGTTTTTTTTTGTGATGCCT..........................................................................................................................................................................231.000.00--------------------------------------1.00-----------------------
...........................................................................................................................................................................GCTAAGACTCTGAAGGCAGACAG........................................................2311.001.00------------------------------1.00-------------------------------
............................................................................TTTGGTTTGTTTGTTTTTGTTTCTTT....................................................................................................................................................261.000.00-1.00------------------------------------------------------------
...............ACCGAAGCCTAGAAAAGTAG.......................................................................................................................................................................................................................2011.001.001.00-------------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTTCT....................................................................................................................................................2811.001.00--1.00-----------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTGCC.....................................................................................................................................................271.000.00-1.00------------------------------------------------------------
........................................................................................................................................................................................AGGCAGACAGACTTGGGTGGAATCCCCCAC....................................301.000.00--1.00-----------------------------------------------------------
..........................................................................................................................................................................AGCTAAGACTCTGAAGGCAGACAGA.......................................................2511.001.00----------------------------------------------1.00---------------
...........................................................................TTTTGGTTTGTTTGTTTTTGTTTCTCT....................................................................................................................................................271.000.00--1.00-----------------------------------------------------------
..............................................................................TGGTTTGTTTGTTTTTCTGG........................................................................................................................................................201.000.00-1.00------------------------------------------------------------
.......................CTAGAAAAGTAGAGTTATCTGAATCGGGTA.....................................................................................................................................................................................................3011.001.00----------------------------------------1.00---------------------
....................AGCCTAGAAAAGTAGAGTTATCTGAATCGGA.......................................................................................................................................................................................................311.000.00---------------------------------1.00----------------------------
.............................................................GTTTTTTTTTGTGATTTTTTA........................................................................................................................................................................211.000.00-----------------------1.00--------------------------------------
..........................................................................................................................................................................AGCTAAGACTCTGAAGTT..............................................................181.000.00------------------------------------------------1.00-------------
.............................................................................TTGGTTTGTTTGTTTTTGTTTTCCTC...................................................................................................................................................261.000.00-1.00------------------------------------------------------------
.............................AAGTAGAGTTATCTGAATCGGAAGT....................................................................................................................................................................................................2511.001.001.00-------------------------------------------------------------
......................................................GTTTGTTGTTTTTTTTTCCC................................................................................................................................................................................201.000.00--1.00-----------------------------------------------------------
..................GAAGCCTAGAAAAGTAGAGTTATCTG..............................................................................................................................................................................................................2611.001.00-----1.00--------------------------------------------------------
................................TAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................2211.007.00-----1.00--------------------------------------------------------
..............................................................TTTTTTTTTGTGATTTTCTT........................................................................................................................................................................201.000.00-------------------------------------------------------1.00------
............................................AATCGGGTAAGTTTGTTGTTTTTTTTCGTG................................................................................................................................................................................301.000.00--1.00-----------------------------------------------------------
....................AGCCTAGAAAAGTAGAGTTATCTGAATCG.........................................................................................................................................................................................................2911.001.00---------------------------------------------------------1.00----
.............................................................................TTGGTTTGTTTGTTTTTGTTCTC......................................................................................................................................................231.000.00-1.00------------------------------------------------------------
.............................AAGTAGAGTTATCTGAATCGG........................................................................................................................................................................................................2111.001.00--------------1.00-----------------------------------------------
...............................GTAGAGTTATCTGAATCGGGTAA....................................................................................................................................................................................................2311.001.00--------------------------------1.00-----------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTCTT......................................................................................................................................................261.000.00-1.00------------------------------------------------------------
............................................................................TTTGGTTTGTTTGTTTTTGTTCTTC.....................................................................................................................................................251.000.00-1.00------------------------------------------------------------
.........................AGAAAAGTAGAGTTATCTGAATCGGAAGA....................................................................................................................................................................................................291.000.00---------------------------------------1.00----------------------
......................................................................TGTGATTTTGGTTTGTTTGTTTTTGT..........................................................................................................................................................2611.001.00--1.00-----------------------------------------------------------
...........................AAAAGTAGAGTTATCTGAATC..........................................................................................................................................................................................................2111.001.00------------1.00-------------------------------------------------
..............................................................................TGGTTTGTTTGTTTTTGTTTTCCT....................................................................................................................................................241.000.00--1.00-----------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTTTC....................................................................................................................................................281.000.00-1.00------------------------------------------------------------
.........................................................................................TTTTTGTTTTTCTTAAAAAG.............................................................................................................................................201.000.00-----------------------1.00--------------------------------------
...............................................................................................................................................................................AGACTCTGAAGGCAGACAGACTTG...................................................2411.001.00----1.00---------------------------------------------------------
........................................................................................................................................................................................AGGCAGACAGACTTGGGTGGAATCCCCC......................................2811.001.00--1.00-----------------------------------------------------------
.............................................................................TTGGTTTGTTTGTTTTTGTTTTCCT....................................................................................................................................................251.000.00-1.00------------------------------------------------------------
.............................AAGTAGAGTTATCTGAATC..........................................................................................................................................................................................................1911.001.00-------1.00------------------------------------------------------
............................AAAGTAGAGTTATCTGAATCGGCAG.....................................................................................................................................................................................................2511.002.00-------------------------------------1.00------------------------
........................................................................................................................................................................................AGGCAGACAGACTTGGGTGGAATCCCCCGC....................................3011.001.00--1.00-----------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTCCC....................................................................................................................................................281.000.00-1.00------------------------------------------------------------
...........................................................................................................................................................................GCTAAGACTCTGAAGGCAGACAGACTT....................................................2711.001.00----------------1.00---------------------------------------------
...........................................................................TTTTGGTTTGTTTGTTTTTGTTCTTC.....................................................................................................................................................261.000.00-1.00------------------------------------------------------------
..........................................................................ATTTTGGTTTGTTTGTTTTTGTTTTTCCTA..................................................................................................................................................3011.003.00-1.00------------------------------------------------------------
.................................................................................TTTGTTTGTTTTTGTTTTTCTTAAAG...............................................................................................................................................2611.001.00-----------1.00--------------------------------------------------
................................................................................................................................................................................................................................AACTGTTTCTGTTTTAAAAA......201.000.00--------------------------------------------------------1.00-----
..............CACCGAAGCCTAGAAAAATC........................................................................................................................................................................................................................201.000.00----1.00---------------------------------------------------------
...................................................................................................................................................................................TCTGAAGGCAGACAGACTTGGGTGG..............................................2511.001.00-----1.00--------------------------------------------------------
...............ACCGAAGCCTAGAAAAGTAGAGTT...................................................................................................................................................................................................................2411.001.00---------1.00----------------------------------------------------
...........................AAAAGTAGAGTTATCTGAATCGGATT.....................................................................................................................................................................................................2611.001.00--------------------------------------------1.00-----------------
.................................AGAGTTATCTGAATCGGA.......................................................................................................................................................................................................1811.009.001.00-------------------------------------------------------------
...........................................................................TTTTGGTTTGTTTGTTTTTGTTTTTCTC...................................................................................................................................................281.000.00-1.00------------------------------------------------------------
........................TAGAAAAGTAGAGTTATC................................................................................................................................................................................................................1811.001.00-----1.00--------------------------------------------------------
.......................................................................................TGTTTTTGTTTTTCTTAAGG...............................................................................................................................................201.000.00-1.00------------------------------------------------------------
...........................................................................TTTTGGTTTGTTTGTTTTTGTTTTCGT....................................................................................................................................................271.000.00--1.00-----------------------------------------------------------
...................................AGTTATCTGAATCGG........................................................................................................................................................................................................1520.500.50----------------------------0.50---------------------------------
..................................GAGTTATCTGAATCGGA.......................................................................................................................................................................................................1720.502.00------------------------------0.50-------------------------------
...................................AGTTATCTGAATCGGAAG.....................................................................................................................................................................................................1820.500.50-----------------------------0.50--------------------------------
..............................................................................TGGTTTGTTTGTTTTTGTTTTTCTT...................................................................................................................................................2530.330.33-0.33------------------------------------------------------------
..............................................................................TGGTTTGTTTGTTTTTGTTTTTC.....................................................................................................................................................2330.330.33-0.33------------------------------------------------------------
...............................................................TTTTTTTTGTGATTTTGGT........................................................................................................................................................................1940.250.25-0.25------------------------------------------------------------
................................TAGAGTTATCTGAAT...........................................................................................................................................................................................................1580.120.12-----------------------------------------------------------0.12--

Antisense strand
ATCCCCTTCACCAGCACCGAAGCCTAGAAAAGTAGAGTTATCTGAATCGGGTAAGTTTGTTGTTTTTTTTTGTGATTTTGGTTTGTTTGTTTTTGTTTTTCTTAAAGCTGATTTTGATTTTTTGCACATTTGGTCATCCCCTTCTGCTTGAAGATTAAGTATAGGGTAAGAGCTAAGACTCTGAAGGCAGACAGACTTGGGTGGAATCCCCCATTCCAGAATTTAACTGTTTCTGTTTTAATTAACTTAT
..........................................................................(((..(((((((((((((((((((((((((...(((..((((((((((.(((.....((....)).....)))..))))))))))..)))..)))))...)))))...)))))))))))))))..)))................................................
.....................................................................70......................................................................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532930(GSM532930)
G702T. (cervix)		SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
...............................................................TTTTTTTTGTGATTTGGGG........................................................................................................................................................................ 191.000.00----------------------------------------------------------1.00---
..........................................................................................................................................................................................................GGAATCCCCCATTCCTG............................... 171.000.00---------------------------------------------------1.00----------
...........................................................................TTTTGGTTTGTTTGTTTTTGTTACTA..................................................................................................................................................... 261.000.00------------------------------------------1.00-------------------