ID: uc010oct.1_intron_7_0_chr1_19062373_f.3p
GENE: (8)
chr1:19071108-19071357+


(2)
B-CELL 		(14)
BREAST 		(8)
CELL-LINE 		(1)
LIVER 		(1)
OTHER 		(3)
SKIN

Sense strand
ATGGAAGGATGATGGATGGATGAAAGAATGGATGAGTAGACAGGACGGATGGATGGATGGATGGATGGATGGATAAATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGGTGTAGATAGAGTGAATGGAAGAATAAACAAAAAGAACCTCAATTTCTAGGAGAGTCTCTTCTTTTTTCCAGCTGCTGTTGATTATCTGGCCAAAAATGTGAGCCTCTCCACCCAGCGTCGC
..............................................................................................................................((((.........((..((......))..)).......))))..................................................................................
.................................................................................................98.....................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGGTTA...........................................................................................................................................36012.001.00---1.00-1.005.00--1.002.00--1.00---1.00-----------
......................................................................................................GGATGGATGGATGGATGGATGGCAA...........................................................................................................................2510.000.00-10.00---------------------------
...............................................GATGGATGGATGGATGGATGGCCGT..................................................................................................................................................................................2510.000.0010.00----------------------------
....................................................................................................ATGGATGGATGGATGGATGGATGGAA............................................................................................................................268.000.00--8.00--------------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGGC.............................................................................................................................................3407.001.00-----2.00--2.00--2.00------------1.00----
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGTA.............................................................................................................................................346.000.00---1.001.001.00-1.00-1.00-1.00-----------------
...............................................................................................GATGGATGGATGGATGGATGGATGGATGGATTGAG........................................................................................................................355.000.00---5.00-------------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGAGGGA.............................................................................................................................................344.000.00---1.001.001.00-------------------1.00---
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATTGA.............................................................................................................................................343.000.00----1.00-----1.00--1.00---------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATATT.............................................................................................................................................342.000.00-------1.00-------------1.00-------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGTATA...........................................................................................................................................362.000.00----1.00----------------------1.00-
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGGTTT...........................................................................................................................................3602.001.00---1.00------------1.00------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATTGG.............................................................................................................................................341.000.00--------1.00--------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGTTTT...........................................................................................................................................361.000.00---------1.00-------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGGCTA...........................................................................................................................................3601.001.00-----1.00-----------------------
...........................................................................AATGGATGGATGGATGGATGGATGGA.....................................................................................................................................................2601.001.00--1.00--------------------------
...............................................................................................................................................ATGGAAGAATAAACAAAAGCAG.....................................................................................221.000.00----------------------1.00------
.......................................................................................................................GATGGATGGGTGTAGGCA.................................................................................................................181.000.00-----------------------1.00-----
......................................................GGATGGATGGATGGATGGATAAGACC..........................................................................................................................................................................261.000.00---------------1.00-------------
...........................................................................AATGGATGGATGGATGGATGGATTT......................................................................................................................................................251.000.00----------------1.00------------
...........................................................................AATGGATGGATGGATGGATGGATGTATA...................................................................................................................................................281.000.00-------1.00---------------------
...........................................................................AATGGATGGATGGATGGCTAA..........................................................................................................................................................211.000.00--------1.00--------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGG..............................................................................................................................................3301.001.00------------------1.00----------
............................................ACGGATGGATGGATGGATGGCGA.......................................................................................................................................................................................231.000.00-------------------1.00---------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGTGT............................................................................................................................................351.000.00---------1.00-------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATGGATAT..........................................................................................................................................371.000.00-------1.00---------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATCGA.............................................................................................................................................341.000.00----1.00------------------------
...........................................................................AATGGATGGATGGATGGATGGATGGATGGATTGGT............................................................................................................................................351.000.00----------1.00------------------
...........................................................................AATGGATGGATGGATGGATGGATGGGGA...................................................................................................................................................281.000.00----1.00------------------------
........................................................ATGGATGGATGGATGGATAACCG...........................................................................................................................................................................231.000.00--------------1.00--------------
.......................................................................................................................GATGGATGGGTGTAGGC..................................................................................................................171.000.00--------------------1.00--------

Antisense strand
ATGGAAGGATGATGGATGGATGAAAGAATGGATGAGTAGACAGGACGGATGGATGGATGGATGGATGGATGGATAAATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGGTGTAGATAGAGTGAATGGAAGAATAAACAAAAAGAACCTCAATTTCTAGGAGAGTCTCTTCTTTTTTCCAGCTGCTGTTGATTATCTGGCCAAAAATGTGAGCCTCTCCACCCAGCGTCGC
..............................................................................................................................((((.........((..((......))..)).......))))..................................................................................
.................................................................................................98.....................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.........................................................................................................................................................................................TCTTCTTTTTTCCAGCAAGA............................................. 203.000.00------------3.00----------------
...................................................GATGGATGGATGGATGGATGGATAAATTATT........................................................................................................................................................................ 311.000.00--------------1.00--------------
......................................................................................................................................................AATAAACAAAAAGAACCTTTG............................................................................... 211.000.00--------------------------1.00--
.....................................................................................................................................................GAATAAACAAAAAGAGT.................................................................................... 171.000.00----------------------------1.00
.......................................................................................................GATGGATGGATGGATGGATGGATGGGTGA...................................................................................................................... 291.000.00---------------1.00-------------