ID: uc010nzv.1_intron_5_0_chr1_7797631_f
GENE: CAMTA1(6)
chr1:7797581-7798068+


(1)
B-CELL
(1)
BRAIN
(3)
BREAST
(3)
CELL-LINE
(2)
LIVER
(2)
OTHER
(6)
SKIN
(1)
XRN.ip

Sense strand
CTCTCCAGAAATACCCAAGGGAGTCACTGTTATTGCAAGCACCAACCCAGGTAAGAATTCAGAATCATGACATCTCAGAGCTTGACAGAGATCCCGTTTGCTTTCATGCAGCTGCCCTCAGCAGAGTCCATAGGATAGTCACATACATTTCAGTTTTTTTGTTAATGTTTCTGATTTTTCTTTAAGAATGCCTAGTGCTGCCCCCTCCCCCAGTACAGAAGAAAGTAGCAAAAATTCTATGTTCATGCAAGAAATACATAATTTTGGAGGAGGAAGATCTGAATCTGGTGTATGCTACTGGGGATATTTAAATGTTAGGGACGTGTCTTGAGTTCCGGCTTTGCACTTTGTGTCTCTCAGGCATAGAGAAAGTGTTGATTCTTGAGGATTCCTAGTTGTATCTCCTGTCCTGACTATCCTTTCTACTGTACTTTTCAGAGCTGAGAAGACCTCGTTCTGAACCCTCTAATTACTACAGCAGTGAGAGC
......................................................................................................................................................................................................................................................................................................................................................................(((.((((((((((....(((..((.(((((....((......))...)))))))..))))))))).)))).))).......................................................
..................................................................................................................................................................................................................................................................................................................................................................355................................................................................438................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR343334SRR343335SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343336SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCTTTCTACTGTAAAAT......................................................2124.000.0014.005.004.00------1.00--------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCTTTCTACTGTAAAA.......................................................2018.000.0012.003.003.00---------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCTTTCTACTGTAAA........................................................193.000.003.00-----------------------
.......................................................................................................................................................................................................................................................................................................................................................................GGCATAGAGAAAGTGTTGATTCT..........................................................................................................2312.002.00---2.00--------------------
........AAATACCCAAGGGAGTCACTGTTATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002.00----2.00-------------------
...........................................................................................................................................................................TGATTTTTCTTTAAGATTTG.........................................................................................................................................................................................................................................................................................................201.000.00-------1.00----------------
.....................................................................................................................................................TCAGTTTTTTTGTTATGAG................................................................................................................................................................................................................................................................................................................................191.000.00------1.00-----------------
............................................................................................................................................................................................................................................................................................................................................TTCCGGCTTTGCACTCTG..........................................................................................................................................181.000.00-------------1.00----------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCTTTCTACTGTACA........................................................191.000.001.00-----------------------
.............................................................................................................................................................................................................................................................................................................................................TCCGGCTTTGCACTTTT..........................................................................................................................................171.000.00-------1.00----------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCTTTCTACTGTAGAA.......................................................201.000.001.00-----------------------
.........................................................................................................................................................................................................................................................................GGAGGAGGAAGATCTGAAATCT.........................................................................................................................................................................................................221.000.00-----1.00------------------
.............CCCAAGGGAGTCACTGTTATTGCAAGCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001.00---1.00--------------------
.................................................................................................................................................................................................AGTGCTGCCCCCTCCCCCAGTACAGAAG...........................................................................................................................................................................................................................................................................2811.001.00------1.00-----------------
........................................................ATTCAGAATCATGACATCTCAGAGCTTGA...................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00----------1.00-------------
.....................................................................................................................................................................................................................................................................................................................................................................CAGGCATAGAGAAAGTGT.................................................................................................................1811.001.00------------1.00-----------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAAGACCTCGAA................................171.000.00----------------1.00-------
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCTTTCTACTGTACAAT......................................................211.000.001.00-----------------------
.......................................................................................................................................................................................................................................................................................................................................TTGAGTTCCGGCTTTGCACTTTG..........................................................................................................................................2311.001.00-------------------1.00----
................AAGGGAGTCACTGTTATTGCAAGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--------1.00---------------
..........................................................................TCAGAGCTTGACAGAACTT...........................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------1.00--------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGACCTCGTTCTGAACCCTCTAA...................2611.001.00-----1.00------------------
...........................................................................................................................GAGTCCATAGGATAGTGG...........................................................................................................................................................................................................................................................................................................................................................181.000.00--------------1.00---------
.......................................................................................................................................................................................................................CAGAAGAAAGTAGCAAAA...............................................................................................................................................................................................................................................................1850.200.20-----------------------0.20

Antisense strand
CTCTCCAGAAATACCCAAGGGAGTCACTGTTATTGCAAGCACCAACCCAGGTAAGAATTCAGAATCATGACATCTCAGAGCTTGACAGAGATCCCGTTTGCTTTCATGCAGCTGCCCTCAGCAGAGTCCATAGGATAGTCACATACATTTCAGTTTTTTTGTTAATGTTTCTGATTTTTCTTTAAGAATGCCTAGTGCTGCCCCCTCCCCCAGTACAGAAGAAAGTAGCAAAAATTCTATGTTCATGCAAGAAATACATAATTTTGGAGGAGGAAGATCTGAATCTGGTGTATGCTACTGGGGATATTTAAATGTTAGGGACGTGTCTTGAGTTCCGGCTTTGCACTTTGTGTCTCTCAGGCATAGAGAAAGTGTTGATTCTTGAGGATTCCTAGTTGTATCTCCTGTCCTGACTATCCTTTCTACTGTACTTTTCAGAGCTGAGAAGACCTCGTTCTGAACCCTCTAATTACTACAGCAGTGAGAGC
......................................................................................................................................................................................................................................................................................................................................................................(((.((((((((((....(((..((.(((((....((......))...)))))))..))))))))).)))).))).......................................................
..................................................................................................................................................................................................................................................................................................................................................................355................................................................................438................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR343334SRR343335SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR343336SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
...............................................................................................................................................TACATTTCAGTTTTTTTGAG..................................................................................................................................................................................................................................................................................................................................... 202.000.002.00-----------------------
...............................................................................................................................................TACATTTCAGTTTTTTTAGA..................................................................................................................................................................................................................................................................................................................................... 201.000.00--1.00---------------------
....................................................................................................................................................................................TTTAAGAATGCCTAGTGG.................................................................................................................................................................................................................................................................................................. 181.000.00----1.00-------------------
...................................................................................................................................................................................................TGCTGCCCCCTCCCCCAA................................................................................................................................................................................................................................................................................... 181.000.00-----------------1.00------
....................................................................GACATCTCAGAGCTTCGG.................................................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00--------------------1.00---
....................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCTGACTATCCTTTG................................................................. 191.000.00------------------1.00-----
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTCTACTGTAGAA....................................................... 181.000.00---------------------1.00--
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTTCAGAGCTGAGTGA........................................ 191.000.00-----------1.00------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGGATAGTCAGGA................................................................ 1750.200.20----------------------0.20-