ID: uc010nym.1_intron_5_0_chr1_1325752_r
GENE: CCNL2(3)
chr1:1325702-1325888-


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BREAST 		(9)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(2)
HEART 		(4)
HELA 		(3)
LIVER 		(23)
SKIN 		(1)
TESTES

Sense strand
AAATTCAGGAAATCTGCTTAAAGATCTTGCAGCTTTATGCTCGGAAAAAGGTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGCAGGTTGATCTCACACACCTGGAGGGTGAAGTGGAAAAAAGAAAGCACGCTAT
..........................................................(((......((((.((((....))))))))...((((((((......((((((....))).)))))))))))..)))....................................................
..................................................51....................................................................................137................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGCAG..................................................87199.0099.0024.0070.00-5.00-----------------------------------------------
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGCA...................................................86124.0024.0024.00--------------------------------------------------
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGC....................................................85122.0022.0019.00-3.00------------------------------------------------
..................................................GTTCTTCGGCATTTTTTCAT.....................................................................................................................20118.0018.002.001.001.00---1.003.00-1.00-----1.00------------1.00-1.001.001.001.00-----1.001.00------1.00---
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGCAGT.................................................88114.0099.0014.00--------------------------------------------------
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGCAGA.................................................8817.0099.00-6.001.00------------------------------------------------
.................................TTTATGCTCGGAAAAAG.........................................................................................................................................1716.006.00----1.00---2.00--1.00-1.00--------1.00----------------------------
.............................................................................................................CTGAACGGACACCTTCTGGCTTTTGCAG..................................................2814.004.00---------1.00--------------1.00-------------1.00----1.00-------
.......................ATCTTGCAGCTTTATGCTCGG...............................................................................................................................................2113.003.00-----3.00---------------------------------------------
.................................TTTATGCTCGGAAAAAGGTTCTTCGGCATTTTTTCATGTAACGTATG...........................................................................................................4712.002.002.00--------------------------------------------------
..................................TTATGCTCGGAAAAAG.........................................................................................................................................1612.002.00----1.00------1.00---------------------------------------
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTG.....................................................8412.002.00--2.00------------------------------------------------
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGTTT..................................................8712.002.002.00--------------------------------------------------
...........................................................................................................TTCTGAACGGACACCTTCTGGCTTTT......................................................2612.002.00-----------------1.00----------------1.00----------------
...........................................................................................................TTCTGAACGGACACCTTCTGGCTTTTGCAG..................................................3012.002.00------2.00--------------------------------------------
......................................................................................................................................................ACCTGGAGGGTGAAGTGGGAG................211.000.00----------1.00----------------------------------------
...............................................AAGGTTCTTCGGCATTTTTTCAT.....................................................................................................................2311.001.00---------------------------------------------1.00-----
.............................................................................................................................................................GGGTGAAGTGGAAAAGGTG...........191.000.00--------------------------------------------1.00------
...................................................................................................................................................................AGTGGAAAAAAGAAAGCACG....2011.001.00-------------------1.00-------------------------------
...........................................................................................................TTCTGAACGGACACCTTCTGGCT.........................................................2311.001.00---------------------------1.00-----------------------
.............................................................................................................CTGAACGGACACCTTCTGGCTTTTGCA...................................................2711.001.00------------------1.00--------------------------------
................................................................................................................................CTTTTGCAGGTTGATCTCAC.......................................2011.001.00-----------------------1.00---------------------------
..........................................................................................................GTTCTGAACGGACACCTTCTGGCTTTTT.....................................................281.000.00-----------------------------1.00---------------------
......................................................................................................................................................................GGAAAAAAGAAAGCACGCT..1911.001.00------------1.00--------------------------------------
........................................................................................................TGGTTCTGAACGGACACCTTCTG............................................................2311.001.00----------------------------------------------1.00----
..................................................GTTCTTCGGCATTTTTTCATGT...................................................................................................................2211.001.00-------------------------------------1.00-------------
.........................................................................................................................................GTTGATCTCACACACCTG................................1811.001.00------------------------------------1.00--------------
....................................................................................................................GACACCTTCTGGCTTTTGCAG..................................................2111.001.00----1.00----------------------------------------------
..............................................................................................................TGAACGGACACCTTCTGGCTTTTG.....................................................2411.001.00------------------------------------------1.00--------
.......................................CTCGGAAAAAGGTTCTTCGGCATTTTTTCAT.....................................................................................................................3111.001.00--------------1.00------------------------------------
..................................................GTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTGCAG...................................................861.000.00-1.00-------------------------------------------------
.....................................................CTTCGGCATTTTTTCAT.....................................................................................................................1711.001.00-------------------------1.00-------------------------
...............................................................................................................GAACGGACACCTTCTGGCTTTTG.....................................................2311.001.00---------------------1.00-----------------------------
........................TCTTGCAGCTTTATGCTCGG...............................................................................................................................................2011.001.00--------------------------1.00------------------------
.............................CAGCTTTATGCTCGGAAAAAGGTTCT....................................................................................................................................2611.001.00----------------1.00----------------------------------
.......................................................................................................................................................CCTGGAGGGTGAAGTGGGAG................201.000.00----------1.00----------------------------------------
................................CTTTATGCTCGGAAAAA..........................................................................................................................................1711.001.00-----------------------------------------1.00---------
........................................................................................................................................................CTGGAGGGTGAAGTGGAAAAAAGAAA.........2611.001.00--------------------1.00------------------------------
......................................................................................................................................................................GGAAAAAAGAAAGCACG....1720.500.50------------0.50--------------------------------------
......................................................TTCGGCATTTTTTCA......................................................................................................................1580.250.25-------------0.12-----------------------------------0.12-
....................................................................................................................................................................GTGGAAAAAAGAAAGCA......1740.250.25----0.25----------------------------------------------
................................................................................................................................................................TGAAGTGGAAAAAAGAA..........1760.170.17------------------------------------------------0.17--
.......................................................TCGGCATTTTTTCAT.....................................................................................................................1590.110.11--------------------------------------------------0.11

Antisense strand
AAATTCAGGAAATCTGCTTAAAGATCTTGCAGCTTTATGCTCGGAAAAAGGTTCTTCGGCATTTTTTCATGTAACGTATGCGTTTGTGTTTGGCCAGAAACACCTGGTTCTGAACGGACACCTTCTGGCTTTTGCAGGTTGATCTCACACACCTGGAGGGTGAAGTGGAAAAAAGAAAGCACGCTAT
..........................................................(((......((((.((((....))))))))...((((((((......((((((....))).)))))))))))..)))....................................................
..................................................51....................................................................................137................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
....................AAGATCTTGCAGCTTCT...................................................................................................................................................... 171.000.00-----------------------------------1.00---------------