ID: uc010nxp.1_intron_1_0_chrY_59106819_f
GENE: (2)
chrY:59106769-59107165+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
B-CELL 		(5)
BRAIN 		(10)
BREAST 		(9)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
UTERUS

Sense strand
AGCATCTGAGCCAATCTAGCATTGCCAGCTCAATGTCCCATAGCACCACTGCCTCTGATCAAAGGCTCTTGGCCAGCATTACACCCTCACCTTCAGGCCAATCCATCATCCGAACCCAACCTGGAGCAGGGGTCCACCCAAAGGCTGATGGTGCTCTGAAGGGAGAAGCTGAGCAATCTGCAGGGCACCCTAGTGAGCACCTCTTCATCTGTGAGGAATGTGGGCGCTGCAAGTGCGTCCCCTGCACAGCAGCTCGCCCTCTCCCCTCCTGCTGGCTGTGCAACCAGCGCTGCCTTTGCTCTGCTGAGAGCCTCCTCGATTATGGCACTTGTCTCTGCTGTGTCAAGGGCCTCTTCTACCACTGCTCCACTGATGATGAAGACAACTGTGCTGATGA
..........................................................................................................................................................................((((..((.((((((((...(((.(((..((((.........)))).....(((((((((..(((((.....))))).)))))..))))......))))))..(((.((((.....)))).)))..)))))))).))..)).))........((((((..((....)).))))))....................................................
..........................................................................................................................................................................171.............................................................................................................................................................................347................................................
SizePerfect hitTotal NormPerfect NormTAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189782TAX577739(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCCTGT.......................................................2213.000.003.003.00-1.001.00-------1.00-------------1.00-1.001.00-------1.00------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCCTTT.......................................................227.000.001.00-1.001.001.001.001.00-----------------1.00-------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCCGTT.......................................................223.000.002.00--1.00----------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCATGT.......................................................223.000.001.00--1.00-----------------------------1.00----------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGTCTT........................................................2123.000.502.00-------------1.00-----------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCGG............................................................172.000.001.00--1.00----------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCAGGT.......................................................222.000.001.00--------------1.00----------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCCTG........................................................212.000.00--1.00----------------------1.00------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCGGC...........................................................182.000.001.00-------------------1.00-----------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCGGCC..........................................................192.000.00----1.00-----------------1.00---------------------
...........................................................................................................................................................................................................................GTGGGCGCTGCAAGTT..................................................................................................................................................................161.000.00---------1.00----------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCTTGTT......................................................231.000.001.00-------------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCTTTT.......................................................221.000.00-1.00------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................ACTGATGATGAAGACGGAG..........191.000.00-------------------------------1.00------------
..........................................................................................................................................................................................................................................................................................................................................................................TGCTCCACTGATGATCCA.................181.000.00-------------1.00------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTTTTT.........................................................201.000.00--1.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCTTGT.......................................................221.000.001.00-------------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTACCT.........................................................201.000.00--1.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTTC...........................................................181.000.00--1.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCGGA...........................................................181.000.00------1.00-------------------------------------
...............................................................................................................................................................................ATCTGCAGGGCACCCTACCTC.........................................................................................................................................................................................................211.000.00-------------------1.00------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCCTT........................................................211.000.00-------1.00------------------------------------
............................................................................................................................................................................................................................................................................................................CTGCTGAGAGCCTCCTGC...............................................................................181.000.00---------------------------------------1.00----
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCGGTC..........................................................191.000.00----------------------------------1.00---------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCAGAT.......................................................221.000.00-1.00------------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGCCGGT.......................................................221.000.00-----1.00--------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................CTGATGATGAAGACAGCG..........181.000.00---------------------------1.00----------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCGGCT..........................................................191.000.00-1.00------------------------------------------
.........................................................................................................................................CCAAAGGCTGATGGTGCTCTGAAGGGAGAAGCTGA.................................................................................................................................................................................................................................3521.001.00----------1.00---------------------------------
.................................................................................................................................................................................................................TGTGAGGAATGTGGGCGC..........................................................................................................................................................................1821.001.00-----------------1.00--------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGTCTG........................................................2121.000.50----1.00---------------------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTGTAGT........................................................2121.000.50----------------1.00---------------------------
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTATCG.........................................................201.000.00--1.00-----------------------------------------
...........................................................................................................................................................................................................TTCATCTGTGAGGAATGTGGGCGCTGCAAG....................................................................................................................................................................3020.500.50-----------------------0.50--------------------
..........................................................................AGCATTACACCCTCACCTTCAGGC...........................................................................................................................................................................................................................................................................................................2420.500.50-------------------------------------------0.50
...............................................................................................................................................................................................................................................................................................................................................................................CACTGATGATGAAGACAA............1820.500.50-----------------------------------------0.50--
................................................................................................................................................................................................................................................................................................................................TATGGCACTTGTCTCTG............................................................1720.500.50-0.50------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................CACTGATGATGAAGACAACTGTGC......2420.500.50----------------------------------------0.50---
....................................................................................................................................................................................................................................................................................................................................................................TACCACTGCTCCACTGATGATGAAGACAACTGT........3320.500.50-----------------------0.50--------------------
................................................................................................................................................................................................................CTGTGAGGAATGTGGG.............................................................................................................................................................................1660.170.17---------0.17----------------------------------

Antisense strand
AGCATCTGAGCCAATCTAGCATTGCCAGCTCAATGTCCCATAGCACCACTGCCTCTGATCAAAGGCTCTTGGCCAGCATTACACCCTCACCTTCAGGCCAATCCATCATCCGAACCCAACCTGGAGCAGGGGTCCACCCAAAGGCTGATGGTGCTCTGAAGGGAGAAGCTGAGCAATCTGCAGGGCACCCTAGTGAGCACCTCTTCATCTGTGAGGAATGTGGGCGCTGCAAGTGCGTCCCCTGCACAGCAGCTCGCCCTCTCCCCTCCTGCTGGCTGTGCAACCAGCGCTGCCTTTGCTCTGCTGAGAGCCTCCTCGATTATGGCACTTGTCTCTGCTGTGTCAAGGGCCTCTTCTACCACTGCTCCACTGATGATGAAGACAACTGTGCTGATGA
..........................................................................................................................................................................((((..((.((((((((...(((.(((..((((.........)))).....(((((((((..(((((.....))))).)))))..))))......))))))..(((.((((.....)))).)))..)))))))).))..)).))........((((((..((....)).))))))....................................................
..........................................................................................................................................................................171.............................................................................................................................................................................347................................................
SizePerfect hitTotal NormPerfect NormTAX577744(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189782TAX577739(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR189787GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.....CTGAGCCAATCTAGCTAGG..................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------1.00-----------------------------------
.....................................................................................................................................................................................................................................................ACAGCAGCTCGCCCTCCG...................................................................................................................................... 181.000.00------------------1.00-------------------------
........................................................................................................................................................................................................CTCTTCATCTGTGAGGAAG.................................................................................................................................................................................. 191.000.00------------------------------1.00-------------
...............................................................................................................................................................................................................................................................GCCCTCTCCCCTCCTGCTTGT......................................................................................................................... 211.000.00--------------------------------1.00-----------
.........................................................................................................................................................................................................................ATGTGGGCGCTGCAACTTG................................................................................................................................................................. 191.000.00-----------1.00--------------------------------
...........................................................................................................................................................................................................................................................................................CCAGCGCTGCCTTTGCAGCG.............................................................................................. 201.000.00--------------------------------------1.00-----
..............................................................................................................................................................................................................................................................................................................................................................................CCACTGATGATGAAGGGCT............ 191.000.00---------------------1.00----------------------
.............................................................................................................................................................................................................................................................................................................................................TCTGCTGTGTCAAGGTGC.............................................. 181.000.00------------------------------------1.00-------
.............................................................................................................................................................................................................................................................TCGCCCTCTCCCCTCCTGCTTGA......................................................................................................................... 231.000.00-------1.00------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................TTCTACCACTGCTCCTTCT......................... 191.000.00--------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................................................................................................GGCCTCTTCTACCACTAGAA.............................. 201.000.00-----------------------------------1.00--------
............................................................................................................................................................................................................................................................................................................................................................TCATCATCAGTGGAGCAGTGGTAGAAGAGGC.................. 3120.500.50------------------------------------------0.50-