ID: uc010nsq.2_intron_1_0_chrX_146992903_r
GENE: FMR1-AS1(2)
chrX:146992853-146993209-


(8)
B-CELL 		(7)
BREAST 		(10)
CELL-LINE 		(3)
CERVIX 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
GTGACAGGTCGCACTGCCTCGCGAGGGCCAGAACGCCCATTTCTGCAGAGGTGCACTCAGTGGCGTGGGAAATCAAATGCATCCGGTTATCCCAGTTCGGCCTCTCTGGGATTCCGCGGGAGGGGGTGTCTGGTCTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTCCGGTTCAAAGTAGCGCAGTCTGACTGAGCGGGAGGTGGAGTGGAAGGCGAGAATAGGGGTGAAGGATTAGACAGAAGAAGACTTTGAACTAGGAACAGTGGCAACCAGGGTGACCCAGGCTTTTGTGACCCGTAGAGGCAGAAGGTGAGGCGTCTACGCCCTCTCTCACCAGATTTTGGGCGGCCCT
........................................................................................................................................(((((..(((.(((((((((..(((.(((...((((.((((.....((.(((.....))).))......)))).)))).))).)))...........))))))))).)))..)))))........................................................................................................
......................................................................................................................................135........................................................................................................................258.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189786SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................TTGGTTTGGTTTGGTTTGGGC.....................................................................................................................................................................................................216.000.006.00-----------------------------------------------
.......................................................................................................................................TGGTTTGGTTTGGTTTGGTTTGGTTCTT..................................................................................................................................................................................................284.000.00-4.00----------------------------------------------
....................................................................................................................................................TTTGGTTTGGTTTGGTTTGGTCGGC........................................................................................................................................................................................253.000.001.002.00----------------------------------------------
..........................................................................................................................................TTTGGTTTGGTTTGGTTACT.......................................................................................................................................................................................................203.000.00------3.00-----------------------------------------
......................................................................................................................................................................................................................................GAAGGATTAGACAGAAGAAGACTT.......................................................................................................2413.003.00----3.00-------------------------------------------
...............................................................................................................................................TTTGGTTTGGTTTGGTTTGCTGG...............................................................................................................................................................................................233.000.00-3.00----------------------------------------------
........................................................................................................................................................................................GCAGTCTGACTGAGCGGG...........................................................................................................................................................1812.002.00------------1.00--------------------1.00--------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTGGTTTTT.......................................................................................................................................................................................................282.000.001.001.00----------------------------------------------
...................................................................................................................................................................................................................................................GAAGAAGACTTTGAACTAGGA.............................................................................................2112.002.00--1.001.00--------------------------------------------
......................................................................................................................................................TGGTTTGGTTTGGTTTGGTCCGG........................................................................................................................................................................................2312.002.00---------------------1.00---1.00----------------------
.................................................................................................................................................TGGTTTGGTTTGGTTTGGTTTGGTCTTTT.......................................................................................................................................................................................292.000.00-2.00----------------------------------------------
......................................................................................................................................................................................................................................GAAGGATTAGACAGAAGA.............................................................................................................1812.002.00-------------------1.00----1.00-----------------------
.......................................................................................................................................TGGTTTGGTTTGGTTTGGTTTGGTTATT..................................................................................................................................................................................................282.000.00-2.00----------------------------------------------
..........................................................................................................................................TTTGGTTTGGTTTGGTTTGGTTTGGTTCGG.............................................................................................................................................................................................302.000.002.00-----------------------------------------------
.......................................................................................................................................TGGTTTGGTTTGGTTTGGTTTGGTTCGG..................................................................................................................................................................................................282.000.002.00-----------------------------------------------
............................................................................................................................................................................................................................................................TTTGAACTAGGAACAGTGGC.....................................................................................2012.002.00-----1.00----------------------------------1.00-------
.............................................................................................................................................................................................................................................................TTGAACTAGGAACAGTGGCAA...................................................................................2112.002.00---2.00--------------------------------------------
...........................................................................................................................................TTGGTTTGGTTTGGTTTGGTTTCGG.................................................................................................................................................................................................252.000.002.00-----------------------------------------------
...................................................................................................................................................................................................................................................GAAGAAGACTTTGAACTAGGAACAGT........................................................................................2612.002.00--1.00----1.00----------------------------------------
.............................................................................................................................................................................................................................................................TTGAACTAGGAACAGTGGCA....................................................................................2012.002.00-------------1.00------------------1.00---------------
.....................................................................................................................................................................................................................................................................................................TGTGACCCGTAGAGGCAGAAGGTGA.......................................2511.001.00----------1.00-------------------------------------
.....................................................................................................................................................................................................................AAGGCGAGAATAGGGGTGAA............................................................................................................................2011.001.00-----------------------------------1.00------------
..........................................................................................................................................TTTGGTTTGGTTTGGTTTGGTTTGGTTCGGT............................................................................................................................................................................................311.000.00-1.00----------------------------------------------
......................................................................................................................................................................................................................................GAAGGATTAGACAGAAGAA............................................................................................................1911.001.00-------------------------------------1.00----------
.................................................................................................................................................................................................................................................................................................................................GTCTACGCCCTCTCTCTC..................181.000.00------------------------------------------1.00-----
....................................................................................................................................................................................TAGCGCAGTCTGACTGAGCGGGAGGT.......................................................................................................................................................2611.001.00----------------------------1.00-------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTCTGC............................................................................................................................................................................................................231.000.00-1.00----------------------------------------------
........................................................................................................................................................................................................................................................AGACTTTGAACTAGGAACAGT........................................................................................2111.001.00---1.00--------------------------------------------
...................................CCCATTTCTGCAGAGGTG................................................................................................................................................................................................................................................................................................................1811.001.00--------------------------------------------1.00---
................................................................................................................................................................................................ACTGAGCGGGAGGTGGAG...................................................................................................................................................1811.001.00----1.00-------------------------------------------
.............................................................................................................................................................................................................................................................................................................GTAGAGGCAGAAGGTGGC......................................181.000.00---------------------------------------1.00--------
.......................................................................................................................................................................................................................................AAGGATTAGACAGAAGAAGACTTTGAA...................................................................................................2711.001.00------------------------------1.00-----------------
..................TCGCGAGGGCCAGAACGC.................................................................................................................................................................................................................................................................................................................................1811.001.00-----------1.00------------------------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTGGTTTTTT......................................................................................................................................................................................................291.000.001.00-----------------------------------------------
....................................................................................................................................................TTTGGTTTGGTTTGGTTTGGTCCCTC.......................................................................................................................................................................................261.000.001.00-----------------------------------------------
.................................................................................................................................................................................................................GTGGAAGGCGAGAATAGGGGTGAAGG..........................................................................................................................2611.001.00---------------------------------------------1.00--
....................................................................................................................................................TTTGGTTTGGTTTGGTTTGGTCTAG........................................................................................................................................................................................251.000.001.00-----------------------------------------------
...ACAGGTCGCACTGCCTCGC...............................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------1.00---------------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTTTTG..........................................................................................................................................................................................................251.000.001.00-----------------------------------------------
.............................................................................................................................................................................................................................................................TTGAACTAGGAACAGTGGCAACCAGGG.............................................................................2711.001.00----------------------------------1.00-------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTTCTG..........................................................................................................................................................................................................251.000.001.00-----------------------------------------------
....................................................................................................................................................................................................AGCGGGAGGTGGAGTGGAA..............................................................................................................................................1911.001.00--------------------------1.00---------------------
....................................................................................................................................................................................................................................................................................................TTGTGACCCGTAGAGGCAGAAGGTG........................................2511.001.00----------1.00-------------------------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTGTTTT.........................................................................................................................................................................................................261.000.001.00-----------------------------------------------
.................................................................................................................................................TGGTTTGGTTTGGTTTGGTTTGGTCCT.........................................................................................................................................................................................271.000.00-1.00----------------------------------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTGGTTTGT.......................................................................................................................................................................................................281.000.001.00-----------------------------------------------
.....................................................................................................................................TCTGGTTTGGTTTGGTTTGGTTTGG.......................................................................................................................................................................................................2531.001.000.670.33----------------------------------------------
.......................................................................................................................................................................................................................................AAGGATTAGACAGAAGAA............................................................................................................1811.001.00---------------------------1.00--------------------
.....................................................................................................................................TCTGGTTTGGTTTGGTTTGGTTCT........................................................................................................................................................................................................241.000.00-1.00----------------------------------------------
.............................................................................................................................................................................................................................................................TTGAACTAGGAACAGTGG......................................................................................1811.001.00------------------------------------1.00-----------
.....................................................................................................................................TCTGGTTTGGTTTGGTTTGGTTTGGTTTGGT.................................................................................................................................................................................................3111.001.001.00-----------------------------------------------
...........................................................................................................................................................................................................................................................CTTTGAACTAGGAACAGTGGCAACCAGG..............................................................................2811.001.00--1.00---------------------------------------------
.....................................................................................................................................................................................................................................................................................................TGTGACCCGTAGAGGCAGAAGG..........................................2211.001.00----------------1.00-------------------------------
............................................................................................................................................................................................................GTGGAGTGGAAGGCGAGAAT.....................................................................................................................................2011.001.00-----1.00------------------------------------------
...............................................................................................................................................................................................................................................GACAGAAGAAGACTTTGAA...................................................................................................1911.001.00-----1.00------------------------------------------
......................................................................................................................................................................................................................................................GAAGACTTTGAACTAGG..............................................................................................1711.001.00-----------------------1.00------------------------
....................................................................................................................................GTCTGGTTTGGTTTGGTTTGGTTTTTTA.....................................................................................................................................................................................................281.000.00-1.00----------------------------------------------
..................................................................................................................................................................................................................................................AGAAGAAGACTTTGAACTAGGAACAGTGGCAA...................................................................................3211.001.00-------------------------------1.00----------------
.................................................................................................................................CTGGTCTGGTTTGGTGCG..................................................................................................................................................................................................................181.000.00-----------------------------------------1.00------
...............................................................................................................................................TTTGGTTTGGTTTGGTTTGGTTTGGTC...........................................................................................................................................................................................2730.670.670.67-----------------------------------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTGGTTTGG.......................................................................................................................................................................................................2820.500.500.50-----------------------------------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTGGTTTGGTT.....................................................................................................................................................................................................3020.500.500.50-----------------------------------------------
....................................................................................................................................GTCTGGTTTGGTTTGGTTTGGTTTGG.......................................................................................................................................................................................................2620.500.50-0.50----------------------------------------------
...................................................................................................................................GGTCTGGTTTGGTTTGGTTTGG............................................................................................................................................................................................................2240.250.250.25-----------------------------------------------
..................................................................................................................................TGGTCTGGTTTGGTTTGGTTTGG............................................................................................................................................................................................................2340.250.250.25-----------------------------------------------
.....................................................................................................................................TCTGGTTTGGTTTGGTTTGGTTTG........................................................................................................................................................................................................2450.200.200.20-----------------------------------------------
.................................................................................................................................CTGGTCTGGTTTGGTTTGG.................................................................................................................................................................................................................1950.200.200.20-----------------------------------------------
.....................................................................................................................................TCTGGTTTGGTTTGGTTTGGTTT.........................................................................................................................................................................................................2360.170.17-0.17----------------------------------------------
.....................................................................................................................................TCTGGTTTGGTTTGGTTTGGTTTTTG......................................................................................................................................................................................................2660.170.17-0.17----------------------------------------------
.....................................................................................................................................TCTGGTTTGGTTTGGTTTGGTTTTTT......................................................................................................................................................................................................2660.170.170.17-----------------------------------------------

Antisense strand
GTGACAGGTCGCACTGCCTCGCGAGGGCCAGAACGCCCATTTCTGCAGAGGTGCACTCAGTGGCGTGGGAAATCAAATGCATCCGGTTATCCCAGTTCGGCCTCTCTGGGATTCCGCGGGAGGGGGTGTCTGGTCTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTCCGGTTCAAAGTAGCGCAGTCTGACTGAGCGGGAGGTGGAGTGGAAGGCGAGAATAGGGGTGAAGGATTAGACAGAAGAAGACTTTGAACTAGGAACAGTGGCAACCAGGGTGACCCAGGCTTTTGTGACCCGTAGAGGCAGAAGGTGAGGCGTCTACGCCCTCTCTCACCAGATTTTGGGCGGCCCT
........................................................................................................................................(((((..(((.(((((((((..(((.(((...((((.((((.....((.(((.....))).))......)))).)))).))).)))...........))))))))).)))..)))))........................................................................................................
......................................................................................................................................135........................................................................................................................258.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189786SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553576(SRX182782)
source: Testis. (testes)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................................GTGGAAGGCGAGAATG.................................................................................................................................... 166.000.00--5.00---------------1.00-----------------------------
................................................ACGCCACTGAGTGCACCT................................................................................................................................................................................................................................................................................................... 1812.002.00---------2.00--------------------------------------
.................................................................................................................................................................................................................GTGGAAGGCGAGAATGCGG................................................................................................................................. 192.000.00--------------1.00--1.00------------------------------
..................................................................................................GGCCTCTCTGGGATTAAA................................................................................................................................................................................................................................................. 181.000.00-----------------------------1.00------------------
...............................................................................................................................................................................................................GAGTGGAAGGCGAGAATGG................................................................................................................................... 191.000.00--------------------------------------1.00---------
.........................................................................................................................................................................................................................................................................................................................................CCTCTCTCACCAGATTTA.......... 181.000.00-------1.00----------------------------------------
................................................................................................................................................................TGGTTTGGTCCGGTTCCA................................................................................................................................................................................... 181.000.00----------------------1.00-------------------------
.................................................................................................................................................................................................................GTGGAAGGCGAGAATGCG.................................................................................................................................. 181.000.00---------------1.00--------------------------------
.................................................................................................................................................................................................................GTGGAAGGCGAGAATGC................................................................................................................................... 171.000.00-------------------------------------------1.00----
...............................................................................................................................................................................................................TTCTCGCCTTCCACTC...................................................................................................................................... 1621.001.00--------1.00---------------------------------------
.............................................................................................................................................................................................................................................................................GTCACCCTGGTTGCC......................................................................... 1520.500.50----------------------------------------------0.50-
.............................................................................................................................................................................................................................................................................GGCAACCAGGGTGACGGC...................................................................... 180.500.00--------0.50---------------------------------------
.............................................................................................................................................................................................................................................................................GGCAACCAGGGTGACTTCT..................................................................... 190.500.00--------0.50---------------------------------------
................................................................................................................................................................................................................TTCTCGCCTTCCACT...................................................................................................................................... 1540.250.25-----------------------------------------------0.25