ID: uc010nee.1_intron_1_0_chrX_13673493_f.5p
GENE: (2)
chrX:13673443-13673692+


(5)
B-CELL
(3)
BRAIN
(3)
BREAST
(9)
CELL-LINE
(4)
HEART
(3)
LIVER
(6)
OTHER
(30)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGGCCTGGAGAGTTGCTCAATAAATATATGTTGCCTTCCACTGTGAAGAGGTAAGTGAGAGGGTGAATATCAGGAATTGTGTACATTATGACACTTAAAATATTACAGTTGTCATTTGTAATTTGTAGAGAAGGTTGTCAGCTGCATTGTACACAGTAGGTGTTTTAAATCTTTTCTGACTGAATGGGACTCATCTAGAAAAGCCAGTCATAGAGTTGTCTGCATTCGGTCCAGGAGCAGAACCAGAGCT
....................................................................................................................((((...(((((.((......))..)))))...)))).................................................................................................
..............................................................................................................111...............................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR189784SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR343334SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038857(GSM458540)
D20. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................TTGTAATTTGTAGAGGATG....................................................................................................................1988.000.00-16.007.008.004.003.005.001.00-3.001.00-2.002.003.00-2.001.002.002.00-2.002.002.00---1.00-1.00--1.00-1.00--1.001.00-1.001.00-1.00-1.00-1.001.001.001.001.00--1.00-1.001.00-1.001.00---
...................................................................................................................TTGTAATTTGTAGAGGAT.....................................................................................................................1826.000.00-1.001.00-1.002.00-3.003.00-2.003.00-1.00-2.00-1.00--2.00---------------1.00---------------1.00--1.00-----1.00--
...................................................................................................................TTGTAATTTGTAGAGGATC....................................................................................................................1922.000.0022.00---------------------------------------------------------------
...........................................................................................................................................AGCTGCATTGTACACGGC.............................................................................................182.000.00---------------------------------1.00-----1.00------------------------
.................................................................................................................ATTTGTAATTTGTAGAGGAA.....................................................................................................................202.000.00-------------------------2.00--------------------------------------
...................................................................................................................TTGTAATTTGTAGAGGGC.....................................................................................................................181.000.00-------------------------------1.00--------------------------------
...................................................................................................................TTGTAATTTGTAGAGGCAT....................................................................................................................191.000.00------------------------------------------1.00---------------------
.................................................................................................................ATTTGTAATTTGTAGAGGAT.....................................................................................................................201.000.00--------------------------------------------1.00-------------------
...................................................................................................................TTGTAATTTGTAGAGGCTG....................................................................................................................191.000.00--1.00-------------------------------------------------------------
..................................................................................................................TTTGTAATTTGTAGAGGA......................................................................................................................181.000.00----------------------------------------------------------1.00-----
...................................................................................................................TTGTAATTTGTAGAGGCGT....................................................................................................................191.000.00------------------------------1.00---------------------------------
...........................................................................................................................................AGCTGCATTGTACACGGCT............................................................................................191.000.00-----------------------------------1.00----------------------------
.......................................................................................................................................................................................................................................CAGGAGCAGAACCAGCCCA191.000.00------------------------1.00---------------------------------------
...........................................................................................................................................AGCTGCATTGTACACAGCGAT..........................................................................................211.000.00----------------------------1.00-----------------------------------
....................................................................................................................................................................................................................................GTCCAGGAGCAGAACCCAA...191.000.00--------------------------------------------------------------1.00-
...........................................................................................................................................AGCTGCATTGTACACCTG.............................................................................................181.000.00----------------------------------------------1.00-----------------
.................................................................................................................ATTTGTAATTTGTAGAGGATG....................................................................................................................211.000.00----1.00-----------------------------------------------------------
.....................................................................................................................................................................................GAATGGGACTCATCTAGAAAAGC..............................................2311.001.00------------------------1.00---------------------------------------
....................................................................................................................................................................................................................................GTCCAGGAGCAGAACTCTG...191.000.00------------1.00---------------------------------------------------
......................................................................................................................TAATTTGTAGAGAAGGTTGTC...............................................................................................................2111.001.00-----------------------------------------------------1.00----------
.....TGGAGAGTTGCTCAATGCAG.................................................................................................................................................................................................................................201.000.00-------1.00--------------------------------------------------------
.................................................................................................................ATTTGTAATTTGTAGAGA.......................................................................................................................1820.500.50----0.50-----------------------------------------------------------
................................................................................................................................AGAAGGTTGTCAGCTGC.........................................................................................................1730.330.33---------------------------------------------------------------0.33

Antisense strand
TGGCCTGGAGAGTTGCTCAATAAATATATGTTGCCTTCCACTGTGAAGAGGTAAGTGAGAGGGTGAATATCAGGAATTGTGTACATTATGACACTTAAAATATTACAGTTGTCATTTGTAATTTGTAGAGAAGGTTGTCAGCTGCATTGTACACAGTAGGTGTTTTAAATCTTTTCTGACTGAATGGGACTCATCTAGAAAAGCCAGTCATAGAGTTGTCTGCATTCGGTCCAGGAGCAGAACCAGAGCT
....................................................................................................................((((...(((((.((......))..)))))...)))).................................................................................................
..............................................................................................................111...............................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR189784SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR343334SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038857(GSM458540)
D20. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.................................................................................................................................................................................................................TGCTCCTGGACCGAATGCAGACAACTCTAT........... 3011.001.00--------------------------1.00-------------------------------------