ID: uc010ncj.1_intron_23_0_chr9_140409972_r.3p
GENE: PNPLA7(11)
chr9:140409922-140410171-


(2)
B-CELL
(14)
BREAST
(11)
CELL-LINE
(4)
CERVIX
(1)
HEART
(1)
KIDNEY
(1)
LIVER
(3)
OTHER
(18)
SKIN
(1)
TESTES

Sense strand
TAGTCAGAGGCCGGCACTCGCTTGCACTCACCTGCTGGCCCGGCAGATGCAGAGGCCTGGTGGCCGGTGGGCTGGTCCAGAGCGCGTTCAGGTGCGCAGGGCACTGTGGGGACCCTGCTCCCTGCGTGGCCCCGAATGGGCTGCACCAGACACCAGGGAGTGCGTGCAAACAAGGTTGCTTACGGCTGCCTCCCCAGCAGATCACGGGGGCGGCCGCCCGGCAGCTGCTGGGCCCCTGCTGAAGAGGAGC
.....................................................((((....))))...(((((.((((...(((((......))))).))))...(((((((......)))))))..)))))......................................................................................................................
..................................................51................................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
...............................................................................................................ACCCTGCTCCCTGCGCCA.........................................................................................................................1831.000.00-3.00-2.00-2.002.002.001.001.00--1.00------1.001.00-1.00--1.00--1.00----1.001.00-1.00-1.00--1.00---1.001.001.001.001.001.001.00-----
...............................................................................................................ACCCTGCTCCCTGCGCCC.........................................................................................................................183.000.00---1.00-----------------------1.00---------1.00-------------------
...............................................................................................................ACCCTGCTCCCTGCGCCAT........................................................................................................................193.000.00---1.00-----1.00-------------------1.00---------------------------
.............................................................GGCCGGTGGGCTGGTGC............................................................................................................................................................................173.000.00--3.00------------------------------------------------------
...............................................................................................................ACCCTGCTCCCTGCGCCAA........................................................................................................................192.000.00------------------------1.00-----1.00--------------------------
..............................................................................................................................................................................................................GGGGCGGCCGCCCGGCTCC.........................191.000.00--------------------------------1.00------------------------
..................................................................GTGGGCTGGTCCAGAGCGCGTTCAGG..............................................................................................................................................................2611.001.00-----------1.00---------------------------------------------
...............................................................................................................ACCCTGCTCCCTGCGCAA.........................................................................................................................181.000.00----------------1.00----------------------------------------
............................................................................................................................................................................................................CGGGGGCGGCCGCCCCCGG...........................191.000.00----------------------------------------1.00----------------
............................................................................................................................................................................................................CGGGGGCGGCCGCCCCCCG...........................191.000.001.00--------------------------------------------------------
................................................................................................................................................................................................................GGCGGCCGCCCGGCAAGCG.......................191.000.00---------------1.00-----------------------------------------
........................................................................................................................................................................................GCTGCCTCCCCAGCAGTT................................................181.000.00------------------1.00--------------------------------------
..........................................................GGTGGCCGGTGGGCTGGTCCAGA.........................................................................................................................................................................2311.001.00--------------------------1.00------------------------------
.............................................................GGCCGGTGGGCTGGTGT............................................................................................................................................................................171.000.00--1.00------------------------------------------------------
..............CACTCGCTTGCACTCA............................................................................................................................................................................................................................1611.001.00----------1.00----------------------------------------------
...............................................................................................GCAGGGCACTGTGGGAGAG........................................................................................................................................191.000.00-------------------------------1.00-------------------------
.............................................................................................................GGACCCTGCTCCCTGCGCCA.........................................................................................................................201.000.00-1.00-------------------------------------------------------
.............................................................................CAGAGCGCGTTCAGGTGCGCAGGGCACTGT...............................................................................................................................................3011.001.00----1.00----------------------------------------------------
..........................................................................................................................................................................................................................................CCTGCTGAAGAGGAGC1630.330.33----------0.33----------------------------------------------
...................................................................TGGGCTGGTCCAGAGC.......................................................................................................................................................................1660.170.17-----------0.17---------------------------------------------

Antisense strand
TAGTCAGAGGCCGGCACTCGCTTGCACTCACCTGCTGGCCCGGCAGATGCAGAGGCCTGGTGGCCGGTGGGCTGGTCCAGAGCGCGTTCAGGTGCGCAGGGCACTGTGGGGACCCTGCTCCCTGCGTGGCCCCGAATGGGCTGCACCAGACACCAGGGAGTGCGTGCAAACAAGGTTGCTTACGGCTGCCTCCCCAGCAGATCACGGGGGCGGCCGCCCGGCAGCTGCTGGGCCCCTGCTGAAGAGGAGC
.....................................................((((....))))...(((((.((((...(((((......))))).))))...(((((((......)))))))..)))))......................................................................................................................
..................................................51................................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040042(GSM532927)
G428N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191528(GSM715638)
130genomic small RNA (size selected RNA from . (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191478(GSM715588)
30genomic small RNA (size selected RNA from t. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR029127(GSM416756)
A549. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR029126(GSM416755)
143B. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................................................................................................................GGGGCGGCCGCCCGGGGG.......................... 183.000.002.00---1.00----------------------------------------------------
..........................................................................................................................................................................................................GCGGCCGCCCCCGTG................................. 1512.002.00------------------------------------------1.00-1.00------------
.............................................................................CAGAGCGCGTTCAGGATC........................................................................................................................................................... 182.000.00--------------1.00------------------------1.00-----------------
..........................................................................................................................................................................................................CACGGGGGCGGCCGCG................................ 162.000.00---------------------1.00---------------------1.00-------------
..........................................................................................................................................................................................................CACGGGGGCGGCCGCCGGGG............................ 201.000.00-------------1.00-------------------------------------------
..........................................................................................................................................................................................................CACGGGGGCGGCCGCGAGC............................. 191.000.00-----------------1.00---------------------------------------
..........................................................................................................................................................................................................CACGGGGGCGGCCGCTAG.............................. 181.000.00--------1.00------------------------------------------------
...TCAGAGGCCGGCACTCGAA.................................................................................................................................................................................................................................... 191.000.00-----------------------1.00---------------------------------
..............................................................................................................................................................................................................GGGGCGGCCGCCCGGGTG.......................... 181.000.00----1.00----------------------------------------------------
..............................................................................................................................................................................................................GGGGCGGCCGCCCGGGG........................... 171.000.001.00--------------------------------------------------------
.............................................................................CCTGAACGCGCTCTG.............................................................................................................................................................. 1511.001.00-----------------------------------1.00---------------------
..............................................................................................................................................................................................................GGGGCGGCCGCCCGGCG........................... 171.000.001.00--------------------------------------------------------
..........................................................................................................................................................................................................CACGGGGGCGGCCGCGA............................... 171.000.001.00--------------------------------------------------------
....CGAGTGCCGGCCTCTG...................................................................................................................................................................................................................................... 1620.500.50----------------------------------------------------0.50----
...GCGAGTGCCGGCCTCTGA..................................................................................................................................................................................................................................... 1820.500.50------------------------------------------------------0.50--
...GAGTGCCGGCCTCTGA....................................................................................................................................................................................................................................... 1640.500.50-----------------------------------------------------0.50---
.................................................................TCTGGACCAGCCCACC......................................................................................................................................................................... 1630.330.33----0.33----------------------------------------------------
...AGTGCCGGCCTCTGA........................................................................................................................................................................................................................................ 1560.330.33------------0.17-------------------------------------------0.17
......................................TCTGCATCTGCCGGG..................................................................................................................................................................................................... 1530.330.33----------0.33----------------------------------------------
....GAGTGCCGGCCTCTG....................................................................................................................................................................................................................................... 1550.200.20-------------------------------------------------------0.20-