ID: uc010mzd.1_intron_7_0_chr9_133491905_f.5p
GENE: FUBP3(8)
chr9:133491855-133492104+


(1)
AGO2.ip 		(1)
B-CELL 		(6)
BRAIN 		(5)
BREAST 		(7)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(1)
LIVER 		(1)
OTHER 		(25)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAGTGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGTGTGTGAGCCCGGAGCACGGAGCACAGCGGCCGCTCGCAGCAGGTCTTCAGCTTCCTGGCCCAGGAGATCTGCTTACGGCTGGCATTCCCTGGCTGGGCTGGCTTTGTGCAGCATTGTGCTGAGGCTTCCTTCCTCCATTTGACAGACAGCTTCTGAACATACACCACGGCCACGTCTGATGCCAAATATGATGCCAAG
...................................................................................(((.((.((((((((((.(((....)))...))))))))))...(((((((......))))))).)).)))...((.((((.....))))..)).........................................................................
.................................................................................82.................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		GSM532877(GSM532877)
G691N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................CGCAGCAGGTCTTCAAGG..................................................................................................................................................1819.000.005.002.00-2.001.00---1.00---1.001.001.00-------1.00---1.00-1.00---------------1.00---1.00----
......................................................................................CGCAGCAGGTCTTCAAG...................................................................................................................................................1710.000.002.002.00--1.00----1.00-----1.00--1.00--------------------1.00------1.00------
......................................................................................CGCAGCAGGTCTTCAA....................................................................................................................................................164.000.00---2.00----1.00------------------1.00-------------------------
......................................................................................CGCAGCAGGTCTTCAAGGT.................................................................................................................................................194.000.00---------1.00--1.00-----------------------1.00-1.00--------------
.............CATCGGCAGAGGAGGGGA...........................................................................................................................................................................................................................1813.003.00------2.00--------------------------------------1.00-------
..............................................................................................................................................................TGCAGCATTGTGCTGGGCT.........................................................................192.000.00-----1.00-----------------------------------------1.00-----
..............................................................................................................................................GGCTGGGCTGGCTTTGTGCAGC......................................................................................2211.001.00-----------------------------1.00-----------------------
......................AGGAGGGGAAACAATCAAGC................................................................................................................................................................................................................2011.001.00--------------------1.00--------------------------------
.....................................................................................................................................................................................TTCCTCCATTTGACAGACAGCTCCT............................................251.000.00-----------------------------------1.00-----------------
..............................................................................................................................................................TGCAGCATTGTGCTGAGCTAT.......................................................................211.000.00-----1.00-----------------------------------------------
....................................................GTGTGAGCCCGGAGCACGGAGCACAGCGG.........................................................................................................................................................................2911.001.00--1.00--------------------------------------------------
.......................................................................................................................................................................................................................CCACGGCCACGTCTG....................1511.001.00----1.00------------------------------------------------
..............................................................................................................................................................TGCAGCATTGTGCTGTGTT.........................................................................191.000.00-----1.00-----------------------------------------------
..............................................................................CGGCCGCTCGCAGCAGGGCC........................................................................................................................................................201.000.00--------------------------------1.00--------------------
.....................................................................................................................................................................................TTCCTCCATTTGACAGACAGCTTCTG...........................................2611.001.00-------------------------------------1.00---------------
.......TCTGGTCATCGGCAGAGGAGGGGAAAC........................................................................................................................................................................................................................2711.001.00--1.00--------------------------------------------------
..GTGGGTCTGGTCATCGGCAGA...................................................................................................................................................................................................................................2111.001.00--1.00--------------------------------------------------
...........................................GTTGCAGGTGTGTGAGGAG............................................................................................................................................................................................191.000.00----------------1.00------------------------------------
..............................................................................................................................................................TGCAGCATTGTGCTGAGTTAT.......................................................................211.000.00----------------------------------1.00------------------
.................................................................................................................................................................................................ACAGACAGCTTCTGAACATACACCACGGC............................2911.001.00------------------------------------------1.00----------
.....GGTCTGGTCATCGGCAGAG..................................................................................................................................................................................................................................1911.001.00-----------------------------------------1.00-----------
..............................................................................................................................................................TGCAGCATTGTGCTGAGTTAA.......................................................................211.000.00----------1.00------------------------------------------
.....................................................................................TCGCAGCAGGTCTTCAAG...................................................................................................................................................181.000.00-------------------------------1.00---------------------
.....................................................................................TCGCAGCAGGTCTTCAAGG..................................................................................................................................................191.000.00------------------------------1.00----------------------
..............ATCGGCAGAGGAGGGGAAACA.......................................................................................................................................................................................................................2111.001.00-------------------------------------------------1.00---
..............................................................................................................................................................TGCAGCATTGTGCTGACTAT........................................................................201.000.00------------------------1.00----------------------------
...............................................................................................................................................................................................TGACAGACAGCTTCTGAACATACACCACGG.............................3011.001.00--1.00--------------------------------------------------
..............................................................................................................................................................TGCAGCATTGTGCTGACTGA........................................................................201.000.00-----------1.00-----------------------------------------
..............................................................................................................................................................TGCAGCATTGTGCTGGGGT.........................................................................191.000.00-------------------------------------------1.00---------
..............................................................................................................................................................TGCAGCATTGTGCTGGCTG.........................................................................191.000.00---------------------1.00-------------------------------
..............................................................................................................................................................TGCAGCATTGTGCTGACCTA........................................................................201.000.00----------------------------------------1.00------------
.....GGTCTGGTCATCGGCAGAGG.................................................................................................................................................................................................................................2011.001.00-----------1.00-----------------------------------------
.....GGTCTGGTCATCGGCAGAGGAGGGGAAAC........................................................................................................................................................................................................................2911.001.00-------1.00---------------------------------------------
..............................................................................................................................................................TGCAGCATTGTGCTGAGTGAA.......................................................................211.000.00----------1.00------------------------------------------
................CGGCAGAGGAGGGGACT.........................................................................................................................................................................................................................171.000.00-----------------1.00-----------------------------------
........................................................GAGCCCGGAGCACGGGTG................................................................................................................................................................................181.000.00-----------------------1.00-----------------------------
......GTCTGGTCATCGGCAGAGGAG...............................................................................................................................................................................................................................2111.001.00-------1.00---------------------------------------------
............TCATCGGCAGAGGAGGGGAAACA.......................................................................................................................................................................................................................2311.001.00---------------------------------1.00-------------------
..........................................................GCCCGGAGCACGGAGCACAGCGGC........................................................................................................................................................................2411.001.00-------------------1.00---------------------------------
....GGGTCTGGTCATCGGCA.....................................................................................................................................................................................................................................1720.500.50--------------------------------------------------0.50--
..GTGGGTCTGGTCATCGGCA.....................................................................................................................................................................................................................................1920.500.50------0.50----------------------------------------------
.................GGCAGAGGAGGGGAAAC........................................................................................................................................................................................................................1730.330.33---------------------------------------------------0.33-

Antisense strand
AAGTGGGTCTGGTCATCGGCAGAGGAGGGGAAACAATCAAGCAGTTGCAGGTGTGTGAGCCCGGAGCACGGAGCACAGCGGCCGCTCGCAGCAGGTCTTCAGCTTCCTGGCCCAGGAGATCTGCTTACGGCTGGCATTCCCTGGCTGGGCTGGCTTTGTGCAGCATTGTGCTGAGGCTTCCTTCCTCCATTTGACAGACAGCTTCTGAACATACACCACGGCCACGTCTGATGCCAAATATGATGCCAAG
...................................................................................(((.((.((((((((((.(((....)))...))))))))))...(((((((......))))))).)).)))...((.((((.....))))..)).........................................................................
.................................................................................82.................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040040(GSM532925)
G612N. (cervix)		GSM532877(GSM532877)
G691N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532874(GSM532874)
G699T. (cervix)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................TTCAGCTTCCTGGCCCAG....................................................................................................................................... 181.000.00-------------------------1.00---------------------------
........................................................................................................................................................................................CTGTCTGTCAAATGGAG................................................. 1750.200.20----------------------------------------------------0.20