ID: uc010mzd.1_intron_4_0_chr9_133487893_f
GENE: FUBP3(5)
chr9:133487843-133488392+


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(3)
BRAIN 		(14)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(5)
HELA 		(7)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTAGTAAGTATCCATGTTGTCTACTTTTTCCCTGATTCCTGTCTCTTCTTTTTCTCTCTTTTTTTCTGAGCTGCTTTGCCAGGATGTTCTTTTTGTTTTAATCTCTCTTGTGAGTATCACCTGTAGTAGAATGCTTTGCACATGCCATTCCCCACAGCTCTGAAATGCTGCAGGTCTCTTCAGGCTGAGGGAGAAACCAGAGCACTGGACTGTGGATGTCCCTCCCTTCCCCACCTCTCCCCACCTCAGCTCAGATCCCCTCTGCCTGTAGGCTGTTTCACAAGGGCTTTCTGCTGCCATCATGCCCAAAGAGTGGAGATGGGCTCACGGGGGCCAACTCGATGTGTAGTATTGTGAGCCAAGTGTCACAGTTTGTGGAATTAATTCAGTCATTCCTGCGTGGTGAAATATGGAATAGGGGCGTGTATTCTGACCCTGTTCAATTTGTTTCAGTTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGT
...........................................................................................................................................................................................................................................................(((..(((.((.((.......................)))).)))..))).........................................................................................................................................................................................................................................................
.......................................................................................................................................................................................................................................................248.........................................................308................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577579(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR189783SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACG......................................................................................................................................................................................................................................................1927.502.000.50---1.50-1.00-1.00-0.500.50-0.50---0.50-----------0.500.50---------------------------------0.50-----
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACGT.....................................................................................................................................................................................................................................................2026.502.004.00---0.50--------0.50--0.50------------0.50-------------------------------------0.50--
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGGCGT.....................................................................................................................................................................................................................................................206.000.001.00-----1.00---2.00-1.00----1.00----------------------------------------------------
...............................GACAAAATGGTTGGATTTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004.00---------------3.00----------------------------------------1.00-------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACGTG....................................................................................................................................................................................................................................................2123.502.000.50---0.50---1.00-0.50-----0.50----------------------------------------------------0.50
.........AACGGAAGAATTCAAAGTGCCTGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003.00-3.00--------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGGCG......................................................................................................................................................................................................................................................193.000.002.00-----1.00---------------------------------------------------------------
......AATAACGGAAGAATTCAAAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003.00------------------------2.00----------1.00----------------------------------
............................................................................................................................................................................................................................................................TGGACTGTGGATGTCTG.........................................................................................................................................................................................................................................................................................172.000.00----------------------1.00------------------------------1.00----------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGA........................................................................................................................................................................................................................................................1722.002.00------------0.50----------------0.50------------------------0.50-------------0.50-
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTCCTGCGTGGTGCTG...............................................................................................192.000.00---2.00------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................AGAGTGGAGATGGGCTCACG..............................................................................................................................................................................2012.002.00-2.00--------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................CTCAGCTCAGATCCCCTCTGC..............................................................................................................................................................................................................................................2112.002.00-------------------2.00--------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGCCGT.....................................................................................................................................................................................................................................................202.000.00--------1.00------------------1.00------------------------------------------
................................ACAAAATGGTTGGATTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................192.000.00--2.00-------------------------------------------------------------------
.............................................................................................................................................................................................................................TCTCTTCAGGCTGAGGGAGAAACCAGAGC............................................................................................................................................................................................................................................................................................................2912.002.00---2.00------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGGC.......................................................................................................................................................................................................................................................182.000.001.00---1.00-----------------------------------------------------------------
.......ATAACGGAAGAATTCAAAGTGCCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................252.000.00-------------------------2.00--------------------------------------------
........................................................................................TCTCTTCTTTTTCTCTCTTTTTTCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................272.000.00---------2.00------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACGTA....................................................................................................................................................................................................................................................2121.502.00----0.50-----------0.50------------0.50----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTCAAGCAGAATC....1711.001.00------------------------------1.00---------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATTTCACGGATTCAAGCAGAATAA...281.000.00----------------------------------1.00-----------------------------------
...GGTAATAACGGAAGAATTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00---------------------------1.00------------------------------------------
...............................................................................................................................................................................................................................................................................................CCACCTCAGCTCAGACGG.....................................................................................................................................................................................................................................................181.000.00-----------1.00----------------------------------------------------------
...GGTAATAACGGAAGAATTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--1.00-------------------------------------------------------------------
..........ACGGAAGAATTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.001.00---------------------------------------------------------1.00------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCAGGGGAGGTGAG..............................1811.001.00-1.00--------------------------------------------------------------------
...................................AAATGGTTGGATTTATTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------1.00------------------------------
.........AACGGAAGAATTCAAAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--1.00-------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTTCACGGATTCAAGCAGA.......2311.001.00-------------------------------1.00--------------------------------------
......AATAACGGAAGAATTCAAAGTGCCTGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00----------------------------------------------------------1.00-----------
......AATAACGGAAGAATTCAAAGTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00--------------------------1.00-------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGGGTT.....................................................................................................................................................................................................................................................201.000.00------------1.00---------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................GCTCAGATCCCCTCTGC..............................................................................................................................................................................................................................................1711.001.00----------------------------------------------------1.00-----------------
.........AACGGAAGAATTCAAAGTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------1.00--------------------------------------------------------------
...........CGGAAGAATTCAAAGTGCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-------1.00--------------------------------------------------------------
.....................CAAAGTGCCTGACAAAATGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------------1.00----------------------------------------------
..........ACGGAAGAATTCAAAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------1.00----------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACTTG....................................................................................................................................................................................................................................................2121.002.00------0.50----0.50----------------------------------------------------------
............................................................................................TTCTTTTTCTCTCTTTTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----1.00----------------------------------------------------------------
..........ACGGAAGAATTCAAAGTGCCTGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------1.00------------------------------------------------
...GGTAATAACGGAAGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------1.00--------------------------------------------------------------
...GGTAATAACGGAAGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00-----------------------------------------------1.00----------------------
...............................................................................................................................................................................................................................................................................................CCACCTCAGCTCAGACGC.....................................................................................................................................................................................................................................................181.000.00--------------------------------------------------1.00-------------------
..........................................................................................TCTTCTTTTTCTCTCTTTTGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00--------------1.00-------------------------------------------------------
................GAATTCAAAGTGCCTGACAAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------------------------------------------1.00--------------
.............................................................................................TCTTTTTCTCTCTTTTTTTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----1.00----------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGAGGTGAGCAGATT........................1811.001.00--------------------------------1.00-------------------------------------
...........CGGAAGAATTCAAAGTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------1.00--------------------------
...GGTAATAACGGAAGAATTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------------------------1.00------------------
............................................................................................TTCTTTTTCTCTCTTTTTTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00---------1.00------------------------------------------------------------
.................................CAAAATGGTTGGATTTATTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00----------------------------1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTCAAGCAGAATCTGG.2011.001.00--1.00-------------------------------------------------------------------
...............................GACAAAATGGTTGGATTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.004.00--1.00-------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................CCACCTCAGCTCAGACGTG....................................................................................................................................................................................................................................................191.000.00-------------------------------------------------------------1.00--------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCATAC.......................................................................................................................................................................................................................................................181.000.00--------1.00-------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................AAAGAGTGGAGATGGGCT..................................................................................................................................................................................1811.001.00-1.00--------------------------------------------------------------------
.................AATTCAAAGTGCCTGACAAAATGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00---------------------------------------------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATCGGCAGGGGA....................................1511.001.00--------------------------------------------1.00-------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTTCACGGATTCAAGCA.........2111.001.00----------------------------------------------1.00-----------------------
..........................................................................................................................................................................................................................................................ACTGGACTGTGGATGTCTG.........................................................................................................................................................................................................................................................................................191.000.00----------------------1.00-----------------------------------------------
...........................................................................................CTTCTTTTTCTCTCTTTTTTTTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00--------------------------------------------------------------1.00-------
.................................................................................................................................................................................ATGCTTTGCACATGCCATGCG................................................................................................................................................................................................................................................................................................................................................................211.000.00--------------------1.00-------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCACA........................................................................................................................................................................................................................................................171.000.00-----------1.00----------------------------------------------------------
..........................................................................................TCTTCTTTTTCTCTCGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------1.00-------------------------------------------------------
................................................................................................TTTTCTCTCTTTTTTTCTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---1.00------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CCTGTAGGCTGTTTCACAAGGGATTT.....................................................................................................................................................................................................................261.000.00-----------------------------------------------------------1.00----------
..................................................................................................................................ATGTTCTTTTTGTTTTACGGA...............................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-------------------------------------1.00--------------------------------
...........................................................................................CTTCTTTTTCTCTCTTTTTTTCTTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00---------1.00------------------------------------------------------------
.....................................................................................................TCTCTTTTTTTCTGAGCTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00---1.00------------------------------------------------------------------
......AATAACGGAAGAATTCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCATACT......................................................................................................................................................................................................................................................191.000.00-----------------1.00----------------------------------------------------
...............AGAATTCAAAGTGCCTGACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------1.00------------------------------------
..............................................................................................................................................................................................................................................AGAAACCAGAGCACTGGACTGTGGATGTC...........................................................................................................................................................................................................................................................................................2911.001.00------------------------------------------------------------1.00---------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTCAAGCAGAATCT...1811.001.00--------------------------------------1.00-------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGCCT......................................................................................................................................................................................................................................................191.000.00-------------1.00--------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................CCAAAGAGTGGAGATGGGCT..................................................................................................................................................................................2011.001.00------------------1.00---------------------------------------------------
.........................................................................................................................................................................................................................................GAGGGAGAAACCAGAGCACTGGACTGTGG................................................................................................................................................................................................................................................................................................2911.001.00---------------------1.00------------------------------------------------
..................................................................................................................................................................................................................................................................................................................CTCTGCCTGTAGGCTGTTTCACAAGGGC........................................................................................................................................................................................................................2811.001.00------------------1.00---------------------------------------------------
...............................................................................................................................................................................................................................................................................................CCACCTCAGCTCAGACGTT....................................................................................................................................................................................................................................................191.000.00----------------1.00-----------------------------------------------------
..................................................................................................TTCTCTCTTTTTTTCTGAGAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................231.000.00-----1.00----------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAATTAATTCAGTC................................................................................................................1911.001.00-1.00--------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGGAGGTGAGCAGAT.........................1811.001.00--1.00-------------------------------------------------------------------
.........AACGGAAGAATTCAAAGTGCCTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------------------------------1.00------
............................................................................................TTCTTTTTCTCTCTTTTTCCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-----1.00----------------------------------------------------------------
.................................................................................................TTTCTCTCTTTTTTTCTGGTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00--------------1.00-------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACTTA....................................................................................................................................................................................................................................................2121.002.00----0.50-----------0.50-----------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCACAC.......................................................................................................................................................................................................................................................181.000.00----1.00-----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACGC.....................................................................................................................................................................................................................................................2021.002.00------------0.50-----------------------------------------------------0.50---
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCATGC.......................................................................................................................................................................................................................................................181.000.00-------------1.00--------------------------------------------------------
...........................................................................................CTTCTTTTTCTCTCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-----1.00----------------------------------------------------------------
.................................................................................................................................................................................................................................................................................TTCCCCACCTCTCCCCCCAG.................................................................................................................................................................................................................................................................201.000.00--------------------1.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGGAGGTGAGCAGATTTC......................2111.001.00-------------------------------------------------1.00--------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACCTA....................................................................................................................................................................................................................................................2120.502.00------0.50---------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACCT.....................................................................................................................................................................................................................................................2020.502.000.50---------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGAAGT.....................................................................................................................................................................................................................................................2020.502.00------------------------------------------------------0.50---------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGACGA.....................................................................................................................................................................................................................................................2020.502.000.50---------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGAGGT.....................................................................................................................................................................................................................................................2020.502.00-----------0.50----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGAGGTG....................................................................................................................................................................................................................................................2120.502.00------0.50---------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................CCCCACCTCAGCTCAGAGGTA....................................................................................................................................................................................................................................................2120.502.00----------0.50-----------------------------------------------------------
.....................CAAAGTGCCTGACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1570.140.14------------0.14---------------------------------------------------------

Antisense strand
GACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTAGTAAGTATCCATGTTGTCTACTTTTTCCCTGATTCCTGTCTCTTCTTTTTCTCTCTTTTTTTCTGAGCTGCTTTGCCAGGATGTTCTTTTTGTTTTAATCTCTCTTGTGAGTATCACCTGTAGTAGAATGCTTTGCACATGCCATTCCCCACAGCTCTGAAATGCTGCAGGTCTCTTCAGGCTGAGGGAGAAACCAGAGCACTGGACTGTGGATGTCCCTCCCTTCCCCACCTCTCCCCACCTCAGCTCAGATCCCCTCTGCCTGTAGGCTGTTTCACAAGGGCTTTCTGCTGCCATCATGCCCAAAGAGTGGAGATGGGCTCACGGGGGCCAACTCGATGTGTAGTATTGTGAGCCAAGTGTCACAGTTTGTGGAATTAATTCAGTCATTCCTGCGTGGTGAAATATGGAATAGGGGCGTGTATTCTGACCCTGTTCAATTTGTTTCAGTTATCGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGT
...........................................................................................................................................................................................................................................................(((..(((.((.((.......................)))).)))..))).........................................................................................................................................................................................................................................................
.......................................................................................................................................................................................................................................................248.........................................................308................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormTAX577740(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		TAX577579(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		SRR189783SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
....................................................................................................................................................................................................................................................................GGATGTCCCTCCCTTGAA................................................................................................................................................................................................................................................................................ 181.000.00------------------------------------1.00---------------------------------
..........................................................................................................................................................................TAGTAGAATGCTTTGTTG.......................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------------1.00---------------------
................................................................................................................................................................................................................................................................................................................CCCTCTGCCTGTAGGCTATA.................................................................................................................................................................................................................................. 201.000.00------------------------------------------1.00---------------------------
...........................................................................................................................................................................................................................................................................................................AGATCCCCTCTGCCTAGC......................................................................................................................................................................................................................................... 181.000.00----------------------------------------1.00-----------------------------
..................................................................................................................................................................................................................................................ACCAGAGCACTGGACTCC.................................................................................................................................................................................................................................................................................................. 181.000.00-----------------------------------------1.00----------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAATTCAGTCATTAAT.......................................................................................................... 191.000.00-------1.00--------------------------------------------------------------
...............................................................................................................................................................................................AGAGCTGTGGGGAATGG...................................................................................................................................................................................................................................................................................................................................................... 1720.500.50-----------------------------------------------------------------0.50----