ID: uc010mzd.1_intron_3_0_chr9_133485375_f.3p
GENE: FUBP3(4)
chr9:133487643-133487892+


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(9)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(6)
HELA 		(4)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGATCTTTGGAAGGAGTGATTGACCAGACGGTTCATTACGTGACACTCTTTGTAGGTGGTGGTGGATTTGTTGGCCAAATTGGCCTGATGTATTTTAAGCTTTTATCATGCAACATTGCCAGTATGGGCAGTTTGGGGACCTAAAATGGCTGCAAAAGTCTGTATTCTGTATTTTTTTCCAAAATGTTCTTTGTTTTTAGGACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTA
....................................................((((.((..(((........((((.....))))...(((((..(((....)))..))))).)))..)).((((((((..((((.((.((......)))).)))).)))))))))))).................................................................................
............................................45..................................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM532874(GSM532874)
G699T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
.................................................TTGTAGGTGGTGGTGGATT......................................................................................................................................................................................191540.00540.00511.0024.002.00---2.00----------------------1.00------------------
..................................................TGTAGGTGGTGGTGGATT......................................................................................................................................................................................181131.00131.00126.005.00----------------------------------------------
.................................................TTGTAGGTGGTGGTGGAT.......................................................................................................................................................................................182115.00115.00107.007.000.50---0.50-----------------------------------------
.................................................TTGTAGGTGGTGGTGGATTA.....................................................................................................................................................................................20113.00540.0013.00-----------------------------------------------
...................................................GTAGGTGGTGGTGGATTA.....................................................................................................................................................................................1818.003.005.003.00----------------------------------------------
..................................................TGTAGGTGGTGGTGGATTA.....................................................................................................................................................................................1915.00131.004.001.00----------------------------------------------
................................................TTTGTAGGTGGTGGTCGTG.......................................................................................................................................................................................195.000.003.00-----2.00-----------------------------------------
.................................................TTGTAGGTGGTGGTGGATTAA....................................................................................................................................................................................2115.00540.005.00-----------------------------------------------
.......................................................................................................................................................................................................................................GACAAAATGGTTGGATTTA1914.004.00--------3.00----------------------------1.00----------
...................................................GTAGGTGGTGGTGGATT......................................................................................................................................................................................1713.003.00--3.00---------------------------------------------
.................................................................................................................................................................................................................AACGGAAGAATTCAAAGTGCCTGACA...............2613.003.00---3.00--------------------------------------------
......................................................................................................................................................................................................AGGACGGTAATAACGGAAGAATT.............................2313.003.00---1.00------2.00-------------------------------------
..............................................................................................................................................................................................................AATAACGGAAGAATTCAAAGTGC.....................2313.003.00----------------2.00-------1.00-----------------------
..........................GACGGTTCATTACGTGACACTCTTTGT.....................................................................................................................................................................................................2712.002.00-----------2.00------------------------------------
...........................................................................................................................................CCTAAAATGGCTGCAAAAGTCTGTATTCTGTATTTTTTTCCAAAATGTTCTTTGTTTTTAG..................................................6112.002.00-------------------2.00----------------------------
.................................................TTGTAGGTGGTGGTGGATTATT...................................................................................................................................................................................2212.00540.002.00-----------------------------------------------
........................................................................................................................................................................................................................................ACAAAATGGTTGGATTTAT192.000.00----2.00-------------------------------------------
...................................................GTAGGTGGTGGTGGATTTGTT..................................................................................................................................................................................2112.002.00-------2.00----------------------------------------
.......................................................................................................................................................................................................GGACGGTAATAACGGAAG.................................1812.002.00----1.00----1.00--------------------------------------
.................................................TTGTAGGTGGTGGTGGAA.......................................................................................................................................................................................182.000.001.001.00----------------------------------------------
...............................................................................................................................................................................................................ATAACGGAAGAATTCAAAGTGCCCG..................252.000.00-----------------2.00------------------------------
.................................................TTGTAGGTGGTGGTGGATTT.....................................................................................................................................................................................2012.002.002.00-----------------------------------------------
.................................................TTGTAGGTGGTGGTGGGTT......................................................................................................................................................................................191.000.001.00-----------------------------------------------
.....TTTGGAAGGAGTGATTGACCAGACGG...........................................................................................................................................................................................................................2611.001.00-------------1.00----------------------------------
...........................................CACTCTTTGTAGGTGGTGGTGGATTT.....................................................................................................................................................................................2611.001.00---1.00--------------------------------------------
.............................................................................................................................GGGCAGTTTGGGGACAGA...........................................................................................................181.000.00---------------------------------1.00--------------
.........................................................................................................................................................AAAAGTCTGTATTCTGTATT.............................................................................2011.001.00--------------------------1.00---------------------
...................................TTACGTGACACTCTTTGTAGGTGGTGGTGGA........................................................................................................................................................................................3111.001.00---------------------------1.00--------------------
......................................................GGTGGTGGTGGATTTGTTTG................................................................................................................................................................................201.000.00-------------------------------------------1.00----
.................................................TTGTAGGTGGTGGTGGGT.......................................................................................................................................................................................181.000.001.00-----------------------------------------------
...........................................................................................................................................................................................................GGTAATAACGGAAGAATTCA...........................2011.001.00----------------------------------------1.00-------
...........................................................................................................................................................................................................GGTAATAACGGAAGAATTC............................1911.001.00----1.00-------------------------------------------
..................................................................................................................................................................................................................ACGGAAGAATTCAAAG........................1611.001.00---------------1.00--------------------------------
................................................................................................................................CAGTTTGGGGACCTAAAATGGAT...................................................................................................231.000.00---1.00--------------------------------------------
...........................................................................................................................................................................................................................................AAATGGTTGGATTTATTA181.000.00-------------------------1.00----------------------
.........................................................................................................................................................................................GTTCTTTGTTTTTAGGACGGT............................................2111.001.00---------------1.00--------------------------------
.................................................................................................................................................................................................................AACGGAAGAATTCAAAGCG......................191.000.00----1.00-------------------------------------------
..............................................................................................................................................................................................................AATAACGGAAGAATTCAAAGTGCCTGACA...............2911.001.00--------------------------------------1.00---------
..............................................................................................................................................................................................................AATAACGGAAGAATTCAAAGTGCC....................2411.001.00---------1.00--------------------------------------
........GGAAGGAGTGATTGACCAGACGG...........................................................................................................................................................................................................................2311.001.00--------------------1.00---------------------------
..................................................TGTAGGTGGTGGTGGATTT.....................................................................................................................................................................................1911.001.001.00-----------------------------------------------
......................................................GGTGGTGGTGGATTTGCCCG................................................................................................................................................................................201.000.00----------------------1.00-------------------------
.................................................................................................................................................................................................................AACGGAAGAATTCAAAGTGCC....................2111.001.00-----1.00------------------------------------------
................................................TTTGTAGGTGGTGGTGGATT......................................................................................................................................................................................2011.001.00--1.00---------------------------------------------
...........................................................TGGTGGATTTGTTGGCCAAATTGGCCTG...................................................................................................................................................................2811.001.00---------------------------------------1.00--------
..............................................................................................................................................................................................................AATAACGGAAGAATTCAAA.........................1911.001.00------------------1.00-----------------------------
...................................................................................................................................................................................................................CGGAAGAATTCAAAGTGCCT...................2011.001.00-----1.00------------------------------------------
..........................................ACACTCTTTGTAGGTGGTGGTGGATTTGTTGGC...............................................................................................................................................................................3311.001.00------------1.00-----------------------------------
.......TGGAAGGAGTGATTGACCAGACGGTTCATCACG..................................................................................................................................................................................................................331.000.00-------------1.00----------------------------------
..................................................TGTAGGTGGTGGTGGATTATT...................................................................................................................................................................................2111.00131.001.00-----------------------------------------------
.............................................................................................................................................................................................................................CAAAGTGCCTGACAAAATGGT........2111.001.00--------------1.00---------------------------------
..................................................................................................................................................................................................................ACGGAAGAATTCAAAGTG......................1811.001.00--------------1.00---------------------------------
.......................................................................................................................................................................................................................AGAATTCAAAGTGCCTGACAA..............2111.001.00-----------------------1.00------------------------
..................................................................................................................................................................................................................ACGGAAGAATTCAAAGTGCCTGACA...............2511.001.00------------1.00-----------------------------------
................................................TTTGTAGGTGGTGGTCG.........................................................................................................................................................................................171.000.00--1.00---------------------------------------------
...................................................GTAGGTGGTGGTGGATTT.....................................................................................................................................................................................1811.001.001.00-----------------------------------------------
.................................................................................................................................................ATGGCTGCAAAAGTCTGTATTCTGTATTTTTTTCCAAAATGTTCTTTGTTTTTAG..................................................5511.001.00---------------------1.00--------------------------
...........................................................................................................................................................................................................GGTAATAACGGAAGAATT.............................1811.001.00-----1.00------------------------------------------
...........................................................................................................................................................................................................GGTAATAACGGAAGAAT..............................1711.001.00--------------------------------1.00---------------
.................................................TTGTAGGTGGTGGTGGACT......................................................................................................................................................................................191.000.001.00-----------------------------------------------
......................................................................................................................................................................................................AGGACGGTAATAACGGAAT.................................191.000.00-----------------------------------1.00------------
........................................................................................................................................................................................................................GAATTCAAAGTGCCTGACAAAATG..........2411.001.00------------------------------------1.00-----------
...............................................................................................................................................................................................TGTTTTTAGGACGGTAATAACG.....................................2211.001.00-----1.00------------------------------------------
......................................................................................................................................................................................................AGGACGGTAATAACGGAAG.................................1911.001.001.00-----------------------------------------------
...................................................................................................................................................................................................................CGGAAGAATTCAAAGTGCC....................1911.001.00------------------------------1.00-----------------
...........................................................................................................................................................................................................GGTAATAACGGAAGAATTCAA..........................2111.001.00-------1.00----------------------------------------
.................................................................................................................................................................................................................AACGGAAGAATTCAAAGTGCCTGAC................2511.001.00--------------------------------------------1.00---
.................................................................................................AGCTTTTATCATGCAACATT.....................................................................................................................................2011.001.00-----1.00------------------------------------------
..................................................TGTAGGTGGTGGTGGATTAT....................................................................................................................................................................................2011.00131.001.00-----------------------------------------------
........................................................................................................................................................................................................GACGGTAATAACGGAAGAATTCAAAG........................2611.001.00---------1.00--------------------------------------
................................................................................................................................................................................................GTTTTTAGGACGGTATAAA.......................................191.000.00----------------------------------1.00-------------
......................................................GGTGGTGGTGGATTTGTTG.................................................................................................................................................................................1911.001.00----------------------------1.00-------------------
.................................................TTGTAGGTGGTGGTGGCT.......................................................................................................................................................................................181.000.001.00-----------------------------------------------
..ATCTTTGGAAGGAGTAATG.....................................................................................................................................................................................................................................191.000.00------------------------------------------1.00-----
.........................................................................................................................................................................................................................................CAAAATGGTTGGATTTATTAT211.000.00------------------1.00-----------------------------
...........................................CACTCTTTGTAGGTGGTGGTGGGTTT.....................................................................................................................................................................................261.000.00---1.00--------------------------------------------
.......................................................................................................................................................................................................................................GACAAAATGGTTGGATTTAT2011.004.00----1.00-------------------------------------------
...........................................CACTCTTTGTAGGTGGTGGTGGATTTGTTGGC...............................................................................................................................................................................3211.001.00-----------------------------------------1.00------
................................................TTTGTAGGTGGTGGTGGA........................................................................................................................................................................................1811.001.001.00-----------------------------------------------
.........................................................................................................................................................................................................................AATTCAAAGTGCCTGACAAAATGGTT.......2611.001.00-------------------------------1.00----------------
......................................................................................................................................................................CTGTATTTTTTTCCAAA...................................................................1770.140.14-----------------------------------------------0.14
.............................................................................................................................................................................................................................CAAAGTGCCTGACAA..............1570.140.14----------------------------------------------0.14-

Antisense strand
AGATCTTTGGAAGGAGTGATTGACCAGACGGTTCATTACGTGACACTCTTTGTAGGTGGTGGTGGATTTGTTGGCCAAATTGGCCTGATGTATTTTAAGCTTTTATCATGCAACATTGCCAGTATGGGCAGTTTGGGGACCTAAAATGGCTGCAAAAGTCTGTATTCTGTATTTTTTTCCAAAATGTTCTTTGTTTTTAGGACGGTAATAACGGAAGAATTCAAAGTGCCTGACAAAATGGTTGGATTTA
....................................................((((.((..(((........((((.....))))...(((((..(((....)))..))))).)))..)).((((((((..((((.((.((......)))).)))).)))))))))))).................................................................................
............................................45..................................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		GSM532874(GSM532874)
G699T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
..............................................................................................................................................................GAAAAAAATACAGAATACAGA....................................................................... 2120.500.50---------------------------------------------0.50--