ID: uc010mwh.1_intron_1_0_chr9_126146193_r.5p
GENE: DENND1A(3)
chr9:126149809-126150058-


(2)
B-CELL
(6)
BREAST
(12)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(41)
SKIN

Sense strand
CCGAGCTCTGGCTTCACCGAGAGCTTTTTCTTCTCCGCTCCCTTTGAATGGTCTCTCCTTCCTTCTTCCATTTCCCTGAGCTCGGCTTGGTGACTCTGCGGGGCTGCATGGCGAAAGCGGGGGGCTGGTGCTGCTTGCCTTTGTGTCGGGGGGAGGGTGTCTGGAGCTGCTGCCTGCCGGTGCCCCAGTGCCAACATGCAGGGTGGACACCACCTCTGCGTGCCACCTCTCAGGGCATCCGTTTTGCCAG
...............................................................................((((..(((..((((..((((....))))..(((((.(((((.(((....))).))))).)))))))))..))).))))............................................................................................
.............................................................................78..............................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
..................................................................................CGGCTTGGTGACTCTAGA......................................................................................................................................................18123.0019.004.00--2.002.002.001.001.002.00--1.00---1.002.00-------1.00-------------1.001.00--------------------1.00---1.00---
..................................................................................CGGCTTGGTGACTCTAG.......................................................................................................................................................17121.0019.001.00-3.002.004.002.00--1.00-3.00-------1.00---------1.00--------1.00---1.00--------1.00-----------------
..................................................................................CGGCTTGGTGACTCT.........................................................................................................................................................15119.0019.002.00--1.00-1.001.001.001.001.00-----1.00----2.001.00--1.00---1.00---1.00--------------1.00----------1.00----1.00-1.00--
..................................................................................CGGCTTGGTGACTCTA........................................................................................................................................................16116.0019.002.00-----1.002.00-1.00-1.00------1.001.00---1.00-2.00---------1.00----------1.00------1.001.00-------------
..................................................................................CGGCTTGGTGACTCTAGAT.....................................................................................................................................................19113.0019.00--5.001.00--1.00------------1.00-1.00-----------------------------1.001.00--1.00------1.00-----
........................................................................................GGTGACTCTGCGGGGCTGCATGGCGAAAGCG...................................................................................................................................3112.002.00-----------------2.00--------------------------------------------------
........................................................................................................................................GCCTTTGTGTCGGGGTTT................................................................................................182.000.00-------------------------------1.00----------------1.00-------------------
....................................................................................................................................................GGGGGAGGGTGTCTGGGGGG..................................................................................201.000.00---------------------------1.00----------------------------------------
................................................................................................................................................GTCGGGGGGAGGGTGGGGG.......................................................................................191.000.00-1.00------------------------------------------------------------------
.........................................................................................................................................CCTTTGTGTCGGGGGTTCG..............................................................................................191.000.00----------------------------------------1.00---------------------------
......................................................................................................................GGGGGGCTGGTGCTGGGG..................................................................................................................181.000.00----------------------------------1.00---------------------------------
...........................................................TCCTTCTTCCATTTCCCTGAGCTCGGCT...................................................................................................................................................................2811.001.00-----------------------1.00--------------------------------------------
..............................................................TTCTTCCATTTCCCTGAGC.........................................................................................................................................................................1911.001.00------------------------------1.00-------------------------------------
...............................................................................................................................................................................GCCGGTGCCCCAGTGCCGTTC......................................................211.000.00-------------------------------------------------------------1.00------
.........................................................................................GTGACTCTGCGGGGCTTCG..............................................................................................................................................191.000.00-------------------------------------------1.00------------------------

Antisense strand
CCGAGCTCTGGCTTCACCGAGAGCTTTTTCTTCTCCGCTCCCTTTGAATGGTCTCTCCTTCCTTCTTCCATTTCCCTGAGCTCGGCTTGGTGACTCTGCGGGGCTGCATGGCGAAAGCGGGGGGCTGGTGCTGCTTGCCTTTGTGTCGGGGGGAGGGTGTCTGGAGCTGCTGCCTGCCGGTGCCCCAGTGCCAACATGCAGGGTGGACACCACCTCTGCGTGCCACCTCTCAGGGCATCCGTTTTGCCAG
...............................................................................((((..(((..((((..((((....))))..(((((.(((((.(((....))).))))).)))))))))..))).))))............................................................................................
.............................................................................78..............................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
........................................................................AGCCGAGCTCAGGGA................................................................................................................................................................... 1517.007.00-5.00-------1.00----1.00-----------------------------------------------------
........................................................................TCCCTGAGCTCGGCTTGGAC.............................................................................................................................................................. 206.000.00-1.00----------1.00---------1.00---1.00--1.00-------------------------------------1.00
........................................................................TCCCTGAGCTCGGCTGGAC............................................................................................................................................................... 195.000.00------------2.00-1.00--------------1.00---1.00----------------------------------
........................................................................TCCCTGAGCTCGGCTGGA................................................................................................................................................................ 184.000.00-1.00------------1.00------------------------------------------1.00--------1.00-
........................TTTTTCTTCTCCGCTAC................................................................................................................................................................................................................. 173.000.00-------------3.00------------------------------------------------------
........................................................................TCCCTGAGCTCGGCTGG................................................................................................................................................................. 172.000.00---------------------------1.00-------------------------------1.00--------
........................................................................AAGCCGAGCTCAGGGA.................................................................................................................................................................. 1612.002.00-----------1.00--------------------------------1.00-----------------------
........................................................................TCCCTGAGCTCGGCTTGG................................................................................................................................................................ 182.000.00-------------------------------------------------1.00------1.00-----------
........................................................................TCCCTGAGCTCGGCTTGGA............................................................................................................................................................... 192.000.00----------------------1.00-------------1.00-------------------------------
....................................................CTCTCCTTCCTTCTTCCTA................................................................................................................................................................................... 191.000.00---------------------------------------------1.00----------------------
........................................................................TCCCTGAGCTCGGCTTG................................................................................................................................................................. 171.000.00------------------------------------------1.00-------------------------
........................................................................TCCCTGAGCTCGGCTGGAG............................................................................................................................................................... 191.000.00--------------------------1.00-----------------------------------------