ID: uc010mwc.1_intron_11_0_chr9_125627937_r.5p
GENE: RC3H2(9)
chr9:125639550-125639799-


(1)
AGO1.ip
(2)
B-CELL
(4)
BRAIN
(5)
BREAST
(10)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(4)
HEART
(6)
HELA
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(23)
SKIN
(1)
XRN.ip

Sense strand
CCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAAGTAAGTGTTGAGAATTCTGTTTCATATGGGTTTAATTTTTGATTTTTATGGGAATGTTATATACAGTCCTGAAGTTTGTGATGACTTTCAAAAATGCAAGTTAAGGGCTGGGCACCATAGCTCATGCCTGTAGTCCCAGCAGTTTGCGGGGCTGAGGCAGGAGGATTGCTTGTGCTCAGGAGTTTGAGACCAGCCTGGGC
...................................................................................................................................((((((.((....)).))))))...((((((.((.(((((....)).))).))))))))............................................................
......................................................................................................................119.........................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR343335SRR040032(GSM532917)
G603N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
...........................................................................................................................GTTTGTGATGACTTTCATGGA..........................................................................................................21159.001.00-18.00-4.00-2.00-2.003.003.002.001.002.00-1.002.00-1.00-1.001.001.00-1.00-1.00---1.001.001.00--1.00-1.001.00----1.001.00-1.00-----1.001.00---1.001.00-----
............................................................................................................................TTTGTGATGACTTTCATGGA..........................................................................................................203.000.00---3.00-----------------------------------------------------------
...........................................................................................................................GTTTGTGATGACTTTCATGGC..........................................................................................................2113.001.00---2.00---1.00-------------------------------------------------------
..........................................................................................................................................................................CTCATGCCTGTAGTCCCAGCA...........................................................2102.002.00------2.00--------------------------------------------------------
..................................................................................................................................................................................................TGCGGGGCTGAGGCAGGAGGACCCC...............................252.000.002.00--------------------------------------------------------------
...................................................................................................................................................................................................................AGGATTGCTTGTGCTCAGGAGC.................222.000.00--2.00------------------------------------------------------------
.................................CAGGAAGAGCTTGAAAA........................................................................................................................................................................................................1711.001.00----------------------1.00----------------------------------------
...........................................................................................................................................................................TCATGCCTGTAGTCCCAGCA...........................................................2001.001.00-------------1.00-------------------------------------------------
..................................................................................................................................................................................................................................CAGGAGTTTGAGACCAGCCTGGGCGAC271.000.00---------------------------------------1.00-----------------------
...............................................................................................................................................................................................................CAGGAGGATTGCTTGTGCTCTG.....................221.000.00-------------------------------------------------1.00-------------
.........................................................................ATATGGGTTTAATTTTTGATTTTTACGGG....................................................................................................................................................291.000.001.00--------------------------------------------------------------
......................TTGCCCATTCTCAGGAAGAGCTTGAAAAGT......................................................................................................................................................................................................3011.001.00-----------------------------------1.00---------------------------
......................................................................................................................................................................................................GGGCTGAGGCAGGAGGATTGCTCGAG..........................261.000.001.00--------------------------------------------------------------
.....................................................................................................................................................................................................GGGGCTGAGGCAGGAGGATTGCCAG............................251.000.00--1.00------------------------------------------------------------
...................................................TAAGTGTTGAGAATTATT.....................................................................................................................................................................................181.000.00------------------------------------------------------1.00--------
............................................................................................................................TTTGTGATGACTTTCATTGA..........................................................................................................201.000.00----1.00----------------------------------------------------------
..........................................................................................................................................................................CTCATGCCTGTAGTCCCAGCAAAA........................................................2401.002.00--------------------------------------1.00------------------------
............................................................................TGGGTTTAATTTTTGATTTTTATGGG....................................................................................................................................................2611.001.001.00--------------------------------------------------------------
.CACGAGGAACAAATTGTA.......................................................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00---------
..................................................................................................................AGTCCTGAAGTTTGTGATGAC...................................................................................................................2111.001.00--------------------------------------------1.00------------------
.................................................................................................................................................................................................TTGCGGGGCTGAGGCAGGAGGATCCCC..............................271.000.00--1.00------------------------------------------------------------
...........................................................................................................................GTTTGTGATGACTTTCAAACT..........................................................................................................211.000.00----1.00----------------------------------------------------------
.................................................................................................................................................................................................................................TCAGGAGTTTGAGACCAGCCGCCC.241.000.001.00--------------------------------------------------------------
...........................................................................................................................................................................................................GAGGCAGGAGGATTGCTAGA...........................201.000.00-------------1.00-------------------------------------------------
.........................................................................................................................................................................................................CTGAGGCAGGAGGATTGCTAGT...........................221.000.00---------------------------------1.00-----------------------------
.........................................................................................................................................................AGGGCTGGGCACCATGCT...............................................................................181.000.00-------------------------------------------------------1.00-------
...........................................................................................................................GTTTGTGATGACTTTC...............................................................................................................1611.001.00----------------1.00----------------------------------------------
...........................................................................................................................GTTTGTGATGACTTTCCTG............................................................................................................1911.001.00-----------------------------------------1.00---------------------
................................TCAGGAAGAGCTTGAAAAGTAAGTGTTGAGAATTCTGTTTCATATGGGTTTAATTTTTGATTTTTATGGGAATGTTATATACAGTCCTGAAGTTTGTGATGA....................................................................................................................10211.001.00----1.00----------------------------------------------------------
.................................................................................................................................................................................................TTGCGGGGCTGAGGCAGGAGGACCCC...............................261.000.001.00--------------------------------------------------------------
..................................................................................................................AGTCCTGAAGTTTGTTAGA.....................................................................................................................191.000.00--------------1.00------------------------------------------------
..........................................................................................................................AGTTTGTGATGACTTTCATGGG..........................................................................................................221.000.00-----------1.00---------------------------------------------------
...........................................................................................................................GTTTGTGATGACTTTTGAA............................................................................................................191.000.00----------------1.00----------------------------------------------
...........................................................................................................................GTTTGTGATGACTTTCAAGGA..........................................................................................................211.000.00----1.00----------------------------------------------------------
....................................................................................................................................................................................................CGGGGCTGAGGCAGGAGGATTGCTTGGGGC........................301.000.00--1.00------------------------------------------------------------
......................................................GTGTTGAGAATTCTGTTTCATATGGGTTTAA.....................................................................................................................................................................3111.001.00---------------------------1.00-----------------------------------
................................................................................................................................................................................................................................CTCAGGAGTTTGAGACCAGCCGGAC.251.000.001.00--------------------------------------------------------------
..........................................................................................................................AGTTTGTGATGACTTAC...............................................................................................................171.000.00----------------------------------------------1.00----------------
..........................................................................................................................AGTTTGTGATGACTTGTG..............................................................................................................181.000.00----------------------------------------1.00----------------------
.................................CAGGAAGAGCTTGAAAAG.......................................................................................................................................................................................................1811.001.00--------------------------1.00------------------------------------
...................................................................................................................................................................................................GCGGGGCTGAGGCAGGAGGACCCC...............................241.000.001.00--------------------------------------------------------------
.............................................................................................................................................................................ATGCCTGTAGTCCCAGCA...........................................................1801.001.00------------------------1.00--------------------------------------
...........................................................................................................................GTTTGTGATGACTTTCACGGA..........................................................................................................2111.001.00-----1.00---------------------------------------------------------
...........................................................................................................................GTTTGTGATGACTTTCA..............................................................................................................1711.001.00-----------------------------------------------------------1.00---
.........................CCCATTCTCAGGAAGAGC...............................................................................................................................................................................................................1811.001.00------------------------------------------------------------1.00--
.......................................................................................................................................................TAAGGGCTGGGCACCAT..................................................................................1720.500.50-------------------------------------------------------------0.50-

Antisense strand
CCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAAGTAAGTGTTGAGAATTCTGTTTCATATGGGTTTAATTTTTGATTTTTATGGGAATGTTATATACAGTCCTGAAGTTTGTGATGACTTTCAAAAATGCAAGTTAAGGGCTGGGCACCATAGCTCATGCCTGTAGTCCCAGCAGTTTGCGGGGCTGAGGCAGGAGGATTGCTTGTGCTCAGGAGTTTGAGACCAGCCTGGGC
...................................................................................................................................((((((.((....)).))))))...((((((.((.(((((....)).))).))))))))............................................................
......................................................................................................................119.........................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577740(Rovira)
total RNA. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR343335SRR040032(GSM532917)
G603N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
.........................................................................................................................................................................GCTCATGCCTGTAGTCCCAGCAGTCACG..................................................... 285.000.005.00--------------------------------------------------------------
..........................................................................................................................................................................CTCATGCCTGTAGTCCCAGCAGTG........................................................ 242.000.002.00--------------------------------------------------------------
...............................................................................................................................................................................GCCTGTAGTCCCAGCAGTTGAG..................................................... 222.000.002.00--------------------------------------------------------------
....................................................................................................................................................................................................CGGGGCTGAGGCAGGAGGATG................................. 212.000.00--2.00------------------------------------------------------------
...............................................................................................................................................................................GCCTGTAGTCCCAGCAGTTTGCG.................................................... 231.000.001.00--------------------------------------------------------------
.....................................................................................................................................................................................................GGGGCTGAGGCAGGAGGATTAGAG............................. 241.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................GCTCATGCCTGTAGTCCCAGACA.......................................................... 231.000.00--------------------------------1.00------------------------------
...............................................................................................................................................................................GCCTGTAGTCCCAGCAGTTGCG..................................................... 221.000.001.00--------------------------------------------------------------
..................................................................................TAATTTTTGATTTTTATTAAC................................................................................................................................................... 211.000.00------------------------------------------------1.00--------------
...........................................................................................................................................................................TCATGCCTGTAGTCCCAGCAGTTTCC..................................................... 261.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................GCTCATGCCTGTAGTCCCAGCAGCTCC...................................................... 271.000.001.00--------------------------------------------------------------
...............................................................................................................................................................................GCCTGTAGTCCCAGCAGTTTCTG.................................................... 231.000.001.00--------------------------------------------------------------
............................................................................................................................................................................................................................TGTGCTCAGGAGTTTGCGCG.......... 201.000.00--------------------------------------------------1.00------------
................................................................................................................................................................................CCTGTAGTCCCAGCAGTTTGATG................................................... 231.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................GCTCATGCCTGTAGTCCCAGCAGTTTCTC.................................................... 291.000.00--1.00------------------------------------------------------------
.........................................................................................................................................................................GCTCATGCCTGTAGTCCCAGCAGTCTCC..................................................... 281.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................TGCTGGGACTACAGGCATGAGC........................................................... 2201.001.00------1.00--------------------------------------------------------
..........................................................................................................................................................................CTCATGCCTGTAGTCCCAGCAAAG........................................................ 2401.000.00------------------1.00--------------------------------------------
.......................................................................................................................TGAAGTTTGTGATGATAC................................................................................................................. 181.000.00-----------------------------------------------1.00---------------
...............................................................................................................................................................................GCCTGTAGTCCCAGCAGTTTGAC.................................................... 231.000.00--1.00------------------------------------------------------------
................................................................................................................................................................................CCTGTAGTCCCAGCAGTAGCG..................................................... 211.000.00--1.00------------------------------------------------------------
.........................................................................................................................................................................GCTCATGCCTGTAGTCCCAGCAGTTGACC.................................................... 291.000.00--1.00------------------------------------------------------------
..............................................................................................................................................................................TGCCTGTAGTCCCAGCAGTTCG...................................................... 221.000.00--1.00------------------------------------------------------------
........................................................................................................................................................................AGCTCATGCCTGTAGTCCCAGCAGTTG....................................................... 271.000.00--1.00------------------------------------------------------------
..............................................................................................................................................................................TGCCTGTAGTCCCAGCAGTCAAG..................................................... 231.000.001.00--------------------------------------------------------------
....................................................................................................................................................................................................CGGGGCTGAGGCAGGAGGATGAG............................... 231.000.001.00--------------------------------------------------------------
..............................................................................GGTTTAATTTTTGATTAAA......................................................................................................................................................... 191.000.00----------------------------------------------------------1.00----
.............................................................................................................................................................................ATGCCTGTAGTCCCAGCAGTTAGCG.................................................... 251.000.001.00--------------------------------------------------------------
..............................................................................................................................................................................TGCCTGTAGTCCCAGCAGAGG....................................................... 211.000.001.00--------------------------------------------------------------
.......................................................................................................................................................................TAGCTCATGCCTGTAGTCCCAGCAGTCCGC..................................................... 301.000.00--1.00------------------------------------------------------------
...............................................................................................................................................................................GCCTGTAGTCCCAGCAGGTAC...................................................... 211.000.00--1.00------------------------------------------------------------
...............................................................................................................................................................................GCCTGTAGTCCCAGCAGTGCG...................................................... 211.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................GCTCATGCCTGTAGTCCCAAATT.......................................................... 231.000.00----------------------------1.00----------------------------------
........................................................................................................................................................................AGCTCATGCCTGTAGTCCCAGCAGTG........................................................ 260.250.00--0.25------------------------------------------------------------
........................................................................................................................................................................ACTGCTGGGACTACAGGCATGAGCT......................................................... 2540.250.250.25--------------------------------------------------------------
................................................................................................................AAACTTCAGGACTGT........................................................................................................................... 1590.110.11--------------------------------------------------------------0.11