ID: uc010mvd.1_intron_6_0_chr9_116973307_f.3p
GENE: (7)
chr9:116979850-116980099+


(1)
AGO2.ip
(10)
B-CELL
(6)
BRAIN
(13)
BREAST
(14)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(9)
LIVER
(4)
OTHER
(1)
RRP40.ip
(13)
SKIN
(4)
UTERUS

Sense strand
CAAGTGTGGGGGCCTGCCCAAGGTCAGACAGCCAGCCTAGAGGAGAGCCAGGGCTCATCTGCAGGCCATCTCCATATGCTGGACTTGGAGAACAGGGCAGGACTACAAGTTCTGTCCCTTGTAGGCCATGTGGAGTCAGCCAGGTGCCCAGCCAGACAACATTGCCCTTGTCTCAAGGAGTTGCTTTCCTCTCCTACCAGGTCCTTCTACCCCAAAGTTCAGAGGCCAGAGGTGGGAACTCAATGCCTTC
....................................................................................((((...((((((((((((.....)))))).)))).)).((.(((.(((......))).))).))..))))........(((((((...))))).)).....................................................................
....................................................................................85...............................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189782SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
TAX577740(Rovira)
total RNA. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786TAX577743(Rovira)
total RNA. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
...............................................................................................................................................................CATTGCCCTTGTCTCGGTC........................................................................19625.170.178.672.503.502.001.00---0.172.00--0.17--0.50--------------------0.330.500.500.170.33-0.17-0.50-0.33------0.170.170.17---0.17-0.17-0.170.17----0.17-0.170.17-----0.17---
...............................................................................................................................................................CATTGCCCTTGTCTCGGT.........................................................................18613.500.177.171.331.171.500.17---1.17---0.17---------------------------0.17------------------------0.170.170.17------------0.17-
...............................................................................................................................................................CATTGCCCTTGTCTCGG..........................................................................1763.500.17---------0.17--0.33--0.17--0.17-----------------0.17--0.17-0.500.330.50---0.170.17-0.17-------------------0.17-----0.170.17----
...............................................................................................................................................................CATTGCCCTTGTCTCAGTC........................................................................192.000.00----------1.00----1.00------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGGGC........................................................................1961.330.17----0.50-------------------------------0.17--0.17--------0.17------------------------------0.17-0.17
...............................................................................................................................................................CATTGCCCTTGTCTCAAAAG.......................................................................201.000.00----1.00-----------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCACAG........................................................................191.000.00-1.00--------------------------------------------------------------------------------
.....................................TAGAGGAGAGCCAGGGC....................................................................................................................................................................................................1711.001.00--------------------1.00-------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCAACGAG......................................................................211.000.00------------1.00---------------------------------------------------------------------
.....................................................................................................................................................................................................................AAAGTTCAGAGGCCAGAGGTG................2111.001.00-------------------------------1.00--------------------------------------------------
.........................................................................................GAACAGGGCAGGACTGTAA..............................................................................................................................................191.000.00-----------------------------1.00----------------------------------------------------
.......................................................................CCATATGCTGGACTTGGAGAACACTG.........................................................................................................................................................261.000.00------------------------------1.00---------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCATT.........................................................................181.000.00--------1.00-------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCATTCT.......................................................................201.000.00------------------1.00---------------------------------------------------------------
....................................................GCTCATCTGCAGGCCATCT...................................................................................................................................................................................1911.001.00--------------------------------1.00-------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGTT.........................................................................1861.000.17----0.17---0.50----------------------------0.17----------------------0.17---------------------
...............................................................................................................................................................CATTGCCCTTGTCTCTGTC........................................................................1960.500.17-0.17-------------------------------------------------0.170.17-----------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCCGGA........................................................................1960.500.170.33--0.17------------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGGCC........................................................................1960.500.170.17---0.17---------------------------------------------------------------------0.17-------
...............................................................................................................................................................CATTGCCCTTGTCTCGTTC........................................................................1960.330.17---------0.17-----0.17------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCTG..........................................................................1760.330.17------------0.17-------------------------------------------0.17-------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGCTC........................................................................1960.330.17------------0.17------------------------------------------------------------0.17--------
...............................................................................................................................................................CATTGCCCTTGTCTCGGGA........................................................................1960.330.17---------------------------------------------0.33------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGGG.........................................................................1860.330.17--------------------------------------------------------------0.17------------0.17------
...............................................................................................................................................................CATTGCCCTTGTCTCGGTT........................................................................1960.330.170.17--------------0.17------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGTGC........................................................................1960.170.17--------------------------------------------------0.17-------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCTGGC........................................................................1960.170.17----0.17-----------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGGC.........................................................................1860.170.17---------0.17------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCCC..........................................................................1760.170.17-----------------------------------------------0.17----------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCTGT.........................................................................1860.170.17-0.17--------------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCTGTT........................................................................1960.170.17-------------------------------------------------0.17--------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGGA.........................................................................1860.170.17---------------------------------------------------------0.17------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCCAGC........................................................................1960.170.17--0.17-------------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGTA.........................................................................1860.170.17----------------------------------------------------------0.17-----------------------
...............................................................................................................................................................CATTGCCCTTGTCTCTGA.........................................................................1860.170.17-------------------------------------------------0.17--------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCCG..........................................................................1760.170.17---------0.17------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGATC........................................................................1960.170.170.17---------------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCGGGT........................................................................1960.170.17-0.17--------------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCTCTG........................................................................1960.170.17----------0.17-----------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCCGTC........................................................................1960.170.17--------------------------------------------------------------------0.17-------------
...............................................................................................................................................................CATTGCCCTTGTCTCGGTG........................................................................1960.170.17----0.17-----------------------------------------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTC............................................................................1560.170.17--------------------------------------0.17-------------------------------------------
...............................................................................................................................................................CATTGCCCTTGTCTCCGTA........................................................................1960.170.170.17---------------------------------------------------------------------------------

Antisense strand
CAAGTGTGGGGGCCTGCCCAAGGTCAGACAGCCAGCCTAGAGGAGAGCCAGGGCTCATCTGCAGGCCATCTCCATATGCTGGACTTGGAGAACAGGGCAGGACTACAAGTTCTGTCCCTTGTAGGCCATGTGGAGTCAGCCAGGTGCCCAGCCAGACAACATTGCCCTTGTCTCAAGGAGTTGCTTTCCTCTCCTACCAGGTCCTTCTACCCCAAAGTTCAGAGGCCAGAGGTGGGAACTCAATGCCTTC
....................................................................................((((...((((((((((((.....)))))).)))).)).((.(((.(((......))).))).))..))))........(((((((...))))).)).....................................................................
....................................................................................85...............................................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189782SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
TAX577740(Rovira)
total RNA. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786TAX577743(Rovira)
total RNA. (breast)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577742(Rovira)
total RNA. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR029131(GSM416760)
MCF7. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.......................................................................................................................................................................................................................AGTTCAGAGGCCAGACTG................. 1822.000.00-----2.003.002.00---1.00----2.002.00-1.00-1.001.001.001.001.00-1.001.00-----1.001.00----------------------------------------------
.......................................................................................................................................................................................................................AGTTCAGAGGCCAGAGCTG................ 194.000.00-----1.00-1.00-----2.00--------------------------------------------------------------------
.......................................................................................................................................................................................................................AGTTCAGAGGCCAGAGGTGCTG............. 221.000.00---------------------------------1.00------------------------------------------------
.............................................................................GCTGGACTTGGAGAACCGTC......................................................................................................................................................... 201.000.00--------------1.00-------------------------------------------------------------------
..............................................................................CTGGACTTGGAGAACGATC......................................................................................................................................................... 191.000.00----------1.00-----------------------------------------------------------------------
................................................................................................................................................................ATTGCCCTTGTCTCATT......................................................................... 171.000.00--------------1.00-------------------------------------------------------------------
.......................................................................................................................................................................................................................AGTTCAGAGGCCAGAGGTGGCTG............ 231.000.00-----------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................TTCCTCTCCTACCAGGTT............................................... 181.000.00--------------------------1.00-------------------------------------------------------