ID: uc010mtz.2_intron_39_0_chr9_113252060_r.5p
GENE: (8)
chr9:113258895-113259144-


(1)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(6)
HEART
(1)
LIVER
(1)
OTHER
(23)
SKIN
(1)
TESTES

Sense strand
CCAATGTTACCTGGCAGATTCCAACAGCTAAAGACAACTCTGGTGAAAAGGTAAGGTTTGTGCAATTATGTGCATCCTTTTCAAATGAATTCTAAATATACTGCAGATATGTGTGTTGAAGACTTACTAATATGCTCATGGTAATACTTGTATTAGGGTTCTCTAGAGGGACAGAACTAATAGGATAGATGTATATATGAAAGTGAGTTTATTAAGGACTATTGACTCACACCATCACAAGGTGAAGTTC
............................................................................................................................................................((((((((....)))..))))).................(((....))).............................................
..........................................................................................................................................................155................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................GATAGATGTATATATCCTT................................................1990.000.0034.00-14.0010.0010.008.006.00----4.00---3.00--------------1.00-----------------
..................................................................................................................................................................CTAGAGGGACAGAACTCTG.....................................................................1921.000.00-------2.002.002.001.00--2.001.00-3.001.002.00---1.00-1.00---------1.00-1.00------1.00----
.................................................................................................................................................................TCTAGAGGGACAGAACTCTG.....................................................................2020.000.00-------4.00-3.003.00--1.002.00--1.00-----1.00--1.001.00-1.00--1.00--1.00------------
...................................................................................................................................................................TAGAGGGACAGAACTAATAGGATAGAGT...........................................................287.000.00-7.00----------------------------------------------
...................................................................................................................................................................TAGAGGGACAGAACTAATAGGATAGAGATT.........................................................305.000.00-5.00----------------------------------------------
................................................................................................................................................................CTCTAGAGGGACAGAACTCTG.....................................................................214.000.00--------1.00--------1.00----1.00--------1.00----------------
.....................................CTCTGGTGAAAAGGTGTC...................................................................................................................................................................................................183.000.00------------3.00-----------------------------------
...................................................................................................................................................................TAGAGGGACAGAACTAATAGGATAGAGAA..........................................................293.000.00-3.00----------------------------------------------
...............................................................................................................................................................TCTCTAGAGGGACAGAACTCTG.....................................................................223.000.00--------1.00--------------1.00-1.00----------------------
.......................................................................................................................................................................................GATAGATGTATATATCCT.................................................183.000.003.00-----------------------------------------------
........................................................................................................................................................................GGACAGAACTAATAGGATAGATGTA.........................................................2502.002.00--------------------2.00---------------------------
.................................................................................................................................................................TCTAGAGGGACAGAACTAATAGGATAGAGATT.........................................................322.000.00-2.00----------------------------------------------
......................................................................................................................................................................AGGGACAGAACTAATAGGACTGT.............................................................232.000.00-2.00----------------------------------------------
.................ATTCCAACAGCTAAAGACAACTCTGG...............................................................................................................................................................................................................2612.002.00---------------------2.00--------------------------
..............................................................................................................................................................TTCTCTAGAGGGACAGAACTCTG.....................................................................232.000.00--------1.00-1.00-------------------------------------
.............................................................................................................TGTGTGTTGAAGACTGG............................................................................................................................171.000.00--------------------------------------------1.00---
.......................................................................................................................................................................................GATAGATGTATATATCATT................................................191.000.001.00-----------------------------------------------
.....................CAACAGCTAAAGACAACTCTGGTGAAAAGGTG.....................................................................................................................................................................................................321.000.00----------------------------------------1.00-------
...............................................................................................................................................................TCTCTAGAGGGACAGAACTAATAGGATAGAGT...........................................................321.000.00-1.00----------------------------------------------
......................................................................................................................................................................................................................................ACCATCACAAGGTGACAG..181.000.00-----------------------------------------1.00------
.................................................................................................................................................................TCTAGAGGGACAGAACTAATAGGATAGAGT...........................................................301.000.00-1.00----------------------------------------------
.........................................................................................TTCTAAATATACTGCTCAG..............................................................................................................................................191.000.00---------------------------------1.00--------------
.....................................................................................................................................................................................AGGATAGATGTATATATGAAAGTGAGTTTA.......................................3011.001.00---------------------------------------1.00--------
.......................................................................................................................................................................................GATAGATGTATATATCCC.................................................181.000.001.00-----------------------------------------------
...............AGATTCCAACAGCTAAAGACAA.....................................................................................................................................................................................................................2211.001.00------------------------------------------1.00-----
........ACCTGGCAGATTCCAACAGCTAAAGACA......................................................................................................................................................................................................................2811.001.00-------------------------------------1.00----------
...................TCCAACAGCTAAAGACAACTCTGG...............................................................................................................................................................................................................2411.001.00----------------------------1.00-------------------
...............................................................................................................................................................................................................................GACTCACACCATCACATA.........181.000.00---------------------------------------------1.00--
...................................................................................................................................................................TAGAGGGACAGAACTAATAGGATAGAATAC.........................................................301.000.00-1.00----------------------------------------------
.............................AAAGACAACTCTGGTGA............................................................................................................................................................................................................1720.500.50----------------------------------------------0.50-
...........................CTAAAGACAACTCTGG...............................................................................................................................................................................................................1620.500.50------------------0.50-----------------------------
....................CCAACAGCTAAAGACAA.....................................................................................................................................................................................................................1740.250.25------------------------0.25-----------------------
................................................................................................................................................................................................................TTATTAAGGACTATTGA.........................1770.140.14-----------------------------------------------0.14

Antisense strand
CCAATGTTACCTGGCAGATTCCAACAGCTAAAGACAACTCTGGTGAAAAGGTAAGGTTTGTGCAATTATGTGCATCCTTTTCAAATGAATTCTAAATATACTGCAGATATGTGTGTTGAAGACTTACTAATATGCTCATGGTAATACTTGTATTAGGGTTCTCTAGAGGGACAGAACTAATAGGATAGATGTATATATGAAAGTGAGTTTATTAAGGACTATTGACTCACACCATCACAAGGTGAAGTTC
............................................................................................................................................................((((((((....)))..))))).................(((....))).............................................
..........................................................................................................................................................155................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................TTTAGCTGTTGGAATC.......................................................................................................................................................................................................................... 1632.332.33-------------------2.33----------------------------
........................................................................................................................................................................TCTATCCTATTAGTTCTGTCC............................................................. 2101.001.00--------------------------------------1.00---------