ID: uc010mta.1_intron_12_0_chr9_103027211_f.5p
GENE: (13)
chr9:103027161-103027410+


(1)
AGO1.ip
(6)
AGO2.ip
(1)
AGO3.ip
(3)
B-CELL
(2)
BRAIN
(2)
BREAST
(18)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(1)
RRP40.ip
(6)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTGCTAGACTTTGCTGCTTTCCCTAATCAGATGGAAAACAATGAAGAGAGGTAAGTTGTTGTTGACTTTTTTTTTTTTTTTTGAGATGGCTTCTCGCCCTGTCACTCAGGTTGGGTTGCAGTGGCACGATCTTGGCTCACTGCAACCTTCGCCTCCTGGGTTCAAGCAATTCTTCTCCTTCAGCCTCCTGAGTACCTGGGATTACAGGCATGCACGATCACACCTGGCCAATTTTTTTGTATTTTTAGTA
..................................................((.(((((..((((..................((((.....))))(((((((.((((.....)))).)))).))).))))..))))).))..............................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormGSE20417(GSM514985)
Colon and lung cancer pool.
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786
...........................................................TGTTGACTTTTTTTTTGTT............................................................................................................................................................................1947.000.0047.00-------------------------------------------
.............................................................TTGACTTTTTTTTTTTTTTTTGGG.....................................................................................................................................................................242.000.00-2.00------------------------------------------
............................................................................................................................CACGATCTTGGCTCACTGCATAA.......................................................................................................232.000.00---------2.00----------------------------------
....................................................................................................................TGCAGTGGCACGATCTTGGAT.................................................................................................................212.000.00-----------2.00--------------------------------
................................................................................................................................ATCTTGGCTCACTGCAACCTTCGCCTTGGG............................................................................................302.000.00-2.00------------------------------------------
..............................................................TGACTTTTTTTTTTTTTTTTGAGGCT..................................................................................................................................................................261.000.00--1.00-----------------------------------------
............................................................GTTGACTTTTTTTTTTTTTTCTTG......................................................................................................................................................................241.000.00-1.00------------------------------------------
..........................................................TTGTTGACTTTTTTTTTTTTTTTCGAG.....................................................................................................................................................................271.000.00-1.00------------------------------------------
.............................................................................................................................................GCAACCTTCGCCTCCTGGGTCTGG.....................................................................................241.000.00------------------------------1.00-------------
.........................................................................................................................................................................................TCCTGAGTACCTGGGATTACAGGCGCGA.....................................281.000.00----------1.00---------------------------------
................................................................ACTTTTTTTTTTTTTTTTGAGATGGCGC..............................................................................................................................................................281.000.00--1.00-----------------------------------------
...........................................................................................................................................CTGCAACCTTCGCCTCCTGGGTTCAAGGC..................................................................................291.000.00-1.00------------------------------------------
................................................................ACTTTTTTTTTTTTTTTTGAGCCAC.................................................................................................................................................................251.000.00-1.00------------------------------------------
.........................ATCAGATGGAAAACAATGAAGA...........................................................................................................................................................................................................2211.001.00-------------------------1.00------------------
....................................................................................................................................TGGCTCACTGCAACCTTCGCCTCCTGGGTGC.......................................................................................311.000.00-1.00------------------------------------------
................................................................................................................................ATCTTGGCTCACTGCAACCTTCCGCG................................................................................................261.000.00-1.00------------------------------------------
....................................................................................................................TGCAGTGGCACGATCTTGGCTCAGAA............................................................................................................261.000.00----------------------------------1.00---------
..............................................................TGACTTTTTTTTTTTTTTTTGAGATAGGG...............................................................................................................................................................291.000.00-1.00------------------------------------------
..............................................................TGACTTTTTTTTTTTTTTTTGATC....................................................................................................................................................................241.000.00--1.00-----------------------------------------
...................................................................................................................................TTGGCTCACTGCAACCTTCGCCTCAGC............................................................................................271.000.00-1.00------------------------------------------
................................................................ACTTTTTTTTTTTTTTTTGAGCAGG.................................................................................................................................................................251.000.00-1.00------------------------------------------
................................................................ACTTTTTTTTTTTTTTTTGAGCCGG.................................................................................................................................................................251.000.00--1.00-----------------------------------------
..............................................................TGACTTTTTTTTTTTTTTTTGAGCCC..................................................................................................................................................................261.000.00--1.00-----------------------------------------
...........................................................................TTTTTTTGAGATGGCTTCTTT..........................................................................................................................................................211.000.00---------------------------------1.00----------
.................................................................................................................................TCTTGGCTCACTGCAACCTTCGCCCT...............................................................................................261.000.00--1.00-----------------------------------------
...............................................................GACTTTTTTTTTTTTTTTTGTGT....................................................................................................................................................................231.000.00---------------------------------------1.00----
................................................................ACTTTTTTTTTTTTTTTTGAGTTGT.................................................................................................................................................................251.000.00--1.00-----------------------------------------
...........................................................TGTTGACTTTTTTTTTTTTTTTTCTG.....................................................................................................................................................................261.000.00--1.00-----------------------------------------
...........................................................TGTTGACTTTTTTTTTTTTTCTTG.......................................................................................................................................................................241.000.00--1.00-----------------------------------------
..............................................................................................CGCCCTGTCACTCAGCT...........................................................................................................................................171.000.00--------1.00-----------------------------------
....................................................................................................................................TGGCTCACTGCAACCTTCGCCTCCGGGT..........................................................................................281.000.00--1.00-----------------------------------------
.......................TAATCAGATGGAAAACAATGAAGAGAGGTAA....................................................................................................................................................................................................3111.001.00--------1.00-----------------------------------
........................................................................................................CTCAGGTTGGGTTGCAGTGG..............................................................................................................................2011.001.00------------1.00-------------------------------
..............................................................TGACTTTTTTTTTTTTTTTTGAGGG...................................................................................................................................................................251.000.00--1.00-----------------------------------------
.................................................................................................................................TCTTGGCTCACTGCAACCTTCGCCTCCGGA...........................................................................................301.000.00--1.00-----------------------------------------
......................................................................................................................................................................................GCCTCCTGAGTACCTGGGATTCTG............................................241.000.00--------------------------------------1.00-----
.........................................................................................................................TGGCACGATCTTGGCTCAGTG............................................................................................................211.000.00--------------1.00-----------------------------
............................AGATGGAAAACAATGAAGAGAG........................................................................................................................................................................................................2211.001.00-------------------------------------1.00------
..............................................................TGACTTTTTTTTTTTTTTTTGTGGG...................................................................................................................................................................251.000.00-1.00------------------------------------------
.........................................................................................................................................CACTGCAACCTTCGCCTCCTGAAAC........................................................................................251.000.00----------1.00---------------------------------
..................................................................TTTTTTTTTTTTTTTTGAGATGGCTTCTC...........................................................................................................................................................2940.250.25-0.25------------------------------------------

Antisense strand
CTGCTAGACTTTGCTGCTTTCCCTAATCAGATGGAAAACAATGAAGAGAGGTAAGTTGTTGTTGACTTTTTTTTTTTTTTTTGAGATGGCTTCTCGCCCTGTCACTCAGGTTGGGTTGCAGTGGCACGATCTTGGCTCACTGCAACCTTCGCCTCCTGGGTTCAAGCAATTCTTCTCCTTCAGCCTCCTGAGTACCTGGGATTACAGGCATGCACGATCACACCTGGCCAATTTTTTTGTATTTTTAGTA
..................................................((.(((((..((((..................((((.....))))(((((((.((((.....)))).)))).))).))))..))))).))..............................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormGSE20417(GSM514985)
Colon and lung cancer pool.
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786
.............................................................................................................................................GCAACCTTCGCCTCCTGGGTTGGA..................................................................................... 2410.000.00---10.00----------------------------------------
...................................................................................................................TTGCAGTGGCACGATCTTGGCTA................................................................................................................ 233.000.00-----3.00--------------------------------------
......................................................................................................................................................................CAATTCTTCTCCTTCAGAT................................................................. 192.000.00-------2.00------------------------------------
.............................................................................................................................................GCAACCTTCGCCTCCTGGGTGGAA..................................................................................... 242.000.00------2.00-------------------------------------
......................................................................................................................................................................CAATTCTTCTCCTTCAGATT................................................................ 201.000.00-------1.00------------------------------------
.........................................................................................................................................CACTGCAACCTTCGCCTCCTGGGTTTT...................................................................................... 271.000.00-----------------------------------------1.00--
.........................................................................................................................................................TCCTGGGTTCAAGCAATTCTTCAGC........................................................................ 251.000.00---------------1.00----------------------------
.............................................................................................................................................GCAACCTTCGCCTCCTGAA.......................................................................................... 191.000.00---------------------1.00----------------------
...................................................................................................................TTGCAGTGGCACGATCTTGGCTCACA............................................................................................................. 261.000.00-----------------------------------1.00--------
.....................................................................................................................................GGCGAAGGTTGCAGTGAGCC................................................................................................. 2001.001.00-----------------------------1.00--------------
...........................................................................................................................................................................................CTGAGTACCTGGGATTACCAGC......................................... 221.000.00------------------1.00-------------------------
.......................................................................................................ACTCAGGTTGGGTTGACCA................................................................................................................................ 191.000.00-------------1.00------------------------------
......................................................................................................................................................................CAATTCTTCTCCTTCATTA................................................................. 191.000.00-----------------------1.00--------------------
.........................................................................................................................................................AAGAATTGCTTGAACCCAGGA............................................................................ 2101.001.00----1.00---------------------------------------
..........................................................................................................................................................................TCTTCTCCTTCAGCCTCC.............................................................. 181.000.00----------------------------------------1.00---
....TAGACTTTGCTGCTTTCT.................................................................................................................................................................................................................................... 181.000.00--------------------1.00-----------------------
......................................................................................................................................................................CAATTCTTCTCCTTCAATTA................................................................ 201.000.00-------------------------------1.00------------
.............................................................................................................................................GCAACCTTCGCCTCCTGGGTTGGAA.................................................................................... 251.000.00----1.00---------------------------------------
...................................................................................................................TTGCAGTGGCACGATCTTGGCTCAA.............................................................................................................. 251.000.00------------------------------------1.00-------
..................................................................................................................................................CTTCGCCTCCTGGGTTATAG.................................................................................... 201.000.00--1.00-----------------------------------------
..............................................................................................................................................TGAACCCAGGAGGCGAAGGTTG...................................................................................... 2201.001.00----1.00---------------------------------------
..............................................................................................CGCCCTGTCACTCAGGTG.......................................................................................................................................... 181.000.00--1.00-----------------------------------------
...............................................................................................................................................................................................................GCATGCACGATCACATTA......................... 181.000.00----------------1.00---------------------------
.................................................................................................................................................CCTTCGCCTCCTGGGTTCAACTAA................................................................................. 241.000.00------1.00-------------------------------------
.............................................................................................................................................CCCAGGAGGCGAAGGTTGC.......................................................................................... 1901.001.00--------------------------1.00-----------------
...............................................................................................................................................................................TCCTTCAGCCTCCTGAGTTCGA..................................................... 221.000.00-1.00------------------------------------------
.................................................................................................................................................................................CTTCAGCCTCCTGAGTAAG...................................................... 191.000.00----------------------------1.00---------------
.........................................................................................................................................CACTGCAACCTTCGCCTCCTTG........................................................................................... 221.000.00-1.00------------------------------------------
.......................................................................................................................................................AAGAATTGCTTGAACCCAGGAGG............................................................................ 2301.001.00---------------------------1.00----------------
..........................................................................................................................................ACTGCAACCTTCGCCTCCTGGGTTAAT..................................................................................... 271.000.00-------------------1.00------------------------
...........................................................................................................................................................CTGGGTTCAAGCAATTCTTAATG........................................................................ 231.000.00-----------------1.00--------------------------
...........................................................................................................................................................................CTTCTCCTTCAGCCTTAAG............................................................ 191.000.00------------------------1.00-------------------
.............................................................................................................................................GCAACCTTCGCCTCCTGGGTTCAAGCAGAA............................................................................... 301.000.00--------------------------------1.00-----------
.............................................................................................................................................GCAACCTTCGCCTCCTGGGTTGGTT.................................................................................... 251.000.00----------------------1.00---------------------
..................................................................................................................................................................................................................CCAGGTGTGATCGTGCA....................... 1730.330.33------------------------------------------0.33-
..................................................................................................................GAGCCAAGATCGTGCCACTGCAAC................................................................................................................ 2450.200.20-------------------------------------------0.20