ID: uc010mqc.2_intron_15_0_chr9_88270116_r.3p
GENE: (10)
chr9:88270066-88270315-


(1)
AGO1.ip OTHER.mut
(2)
B-CELL
(12)
CELL-LINE
(1)
CERVIX
(4)
HEART
(1)
LIVER
(1)
OTHER
(14)
SKIN
(1)
TESTES

Sense strand
GACACTTTTTGAACTAAAGTAAAATTGGTTCAGTTATTCATCAAAAACATTCTTTTTCTTTTTCTTTTTTTAAAAAACAGGAATGTCTGGCAGTCAGGACTCTGGATCCTCTTGTCAATACCTCCAGTCTGATAATGAGGAAGTGTTTCCCAAAAAATCGACTGCCACTCCCAACAATTAAAAGTTCTTTTCATTTCCAGTTGCCTGTTATTCCTGTGACTGGTCCTGTGGCTCAGCTCTACAGCTTACC
..............................................((((((((.((.(((..........))).)).))))))))(((.....))).........................................................................................................................................................
............................................45.......................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
................................................................................GAATGTCTGGCAGTCAGG........................................................................................................................................................1818.008.00---8.00---------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTCTC................................................................................................................................................................................285.000.003.002.00-----------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTTCTG...............................................................................................................................................................................295.000.005.00------------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTC..................................................................................................................................................................................264.000.004.00------------------------------------
.................................................................................AATGTCTGGCAGTCAGGACTCTGGATC..............................................................................................................................................2714.004.00------4.00------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTCTCT...............................................................................................................................................................................293.000.001.002.00-----------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTG...................................................................................................................................................................................253.000.00--1.00--1.00--1.00----------------------------
..............................................ACATTCTTTTTCTTTTTCG.........................................................................................................................................................................................192.000.00--2.00----------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTTTTC...............................................................................................................................................................................292.000.002.00------------------------------------
...............................................CATTCTTTTTCTTTTTCTTTTTG....................................................................................................................................................................................232.000.00--1.00--1.00-------------------------------
............................................................................................GTCAGGACTCTGGATCCTCTG.........................................................................................................................................212.000.00-----------2.00-------------------------
................................................ATTCTTTTTCTTTTTCTTTGGTT...................................................................................................................................................................................232.000.002.00------------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTTCTC...............................................................................................................................................................................292.000.001.001.00-----------------------------------
...............................................................................................................................TCTGATAATGAGGAAGTGTTTCCCAAA................................................................................................2712.002.00--------------1.00--------------1.00-------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTTTTG...............................................................................................................................................................................292.000.00-----1.00-1.00-----------------------------
................................................ATTCTTTTTCTTTTTCCATG......................................................................................................................................................................................202.000.00-----2.00-------------------------------
..............................................................TCTTTTTTTAAAAAACAG..........................................................................................................................................................................1801.001.00--------------------1.00----------------
.................................................TTCTTTTTCTTTTTCTTTTTTTAAACAG.............................................................................................................................................................................281.000.00--1.00----------------------------------
...................................................CTTTTTCTTTTTCTTTTTTTAATTTG.............................................................................................................................................................................261.000.00-----1.00-------------------------------
.....................................................................................................................................................................................AAGTTCTTTTCATTTCCAGTTGCCTG...........................................2611.001.00-------------------------------1.00-----
............................................................................ACAGGAATGTCTGGCAGTCAGGACTCTGG.................................................................................................................................................2911.001.00-1.00-----------------------------------
................................................................................................................................CTGATAATGAGGAAGTGTTTCCCAAA................................................................................................2611.001.00--------------------------------1.00----
..............................................ACATTCTTTTTCTTTTTCTTTG......................................................................................................................................................................................221.000.00--1.00----------------------------------
..............................................ACATTCTTTTTCTTTTCTTC........................................................................................................................................................................................201.000.001.00------------------------------------
................................................ATTCTTTTTCTTTTTCTTTTAGCT..................................................................................................................................................................................241.000.00-1.00-----------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTCTCT................................................................................................................................................................................281.000.001.00------------------------------------
................................................ATTCTTTTTCTTTTTCTTTTTTGAGG................................................................................................................................................................................261.000.001.00------------------------------------
.................................................TTCTTTTTCTTTTTCTAGCC.....................................................................................................................................................................................201.000.001.00------------------------------------
............................................................................ACAGGAATGTCTGGCAGTCAGGACTCTGA.................................................................................................................................................291.000.00-1.00-----------------------------------
...................................................CTTTTTCTTTTTCTTTTTTTAAAAAACAG..........................................................................................................................................................................2911.001.00--1.00----------------------------------
..............................................................................................................................................................................................................GTTATTCCTGTGACTGGTCCTGTGGC..................2611.001.00-------------------1.00-----------------
...................................................CTTTTTCTTTTTCTTTTTTTAACAAG.............................................................................................................................................................................261.000.00--1.00----------------------------------
.....................................................................................................................................AATGAGGAAGTGTTTCCCAAA................................................................................................2111.001.00----------------------------------1.00--
.................................................TTCTTTTTCTTTTTCTTTTTTTAAAAAAAG...........................................................................................................................................................................301.000.00----1.00--------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTCCTC..................................................................................................................................................................................261.000.001.00------------------------------------
.................................................TTCTTTTTCTTTTTCTTTTTTTAACG...............................................................................................................................................................................261.000.00--1.00----------------------------------
..............................................ACATTCTTTTTCTTTTGCT.........................................................................................................................................................................................191.000.00-------1.00-----------------------------
.................................................TTCTTTTTCTTTTTCTTTTTTTATTGC..............................................................................................................................................................................271.000.001.00------------------------------------
...................................................CTTTTTCTTTTTCTTTTTTTACTGG..............................................................................................................................................................................251.000.001.00------------------------------------
..............................................ACATTCTTTTTCTTTTTCTC........................................................................................................................................................................................201.000.00-1.00-----------------------------------
...............................................CATTCTTTTTCTTTTTCTTTTTTAAG.................................................................................................................................................................................261.000.00-----1.00-------------------------------
..................................................................................................................................................................................................................TTCCTGTGACTGGTCCTGTGGCTCAGCT............2811.001.00-----------------1.00-------------------
..................................................TCTTTTTCTTTTTCTTTTTTTAAATTG.............................................................................................................................................................................271.000.00--1.00----------------------------------
...................................................CTTTTTCTTTTTCTTTTTTTATCG...............................................................................................................................................................................241.000.00--------1.00----------------------------
................................................ATTCTTTTTCTTTTTCTTTAAG....................................................................................................................................................................................221.000.00--1.00----------------------------------
......................................................................................CTGGCAGTCAGGACTCTGGATC..............................................................................................................................................2211.001.00-----------------------1.00-------------
................................................ATTCTTTTTCTTTTTCTTTTTTTGGAG...............................................................................................................................................................................271.000.001.00------------------------------------
............................................................................ACAGGAATGTCTGGCAGTCAGGACTCTGGACCC.............................................................................................................................................331.000.001.00------------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTCTCT.................................................................................................................................................................................271.000.00-1.00-----------------------------------
...............................................CATTCTTTTTCTTTTTCTTTTTTTCAAG...............................................................................................................................................................................281.000.00--1.00----------------------------------
...............................................CATTCTTTTTCTTTTTCTTTTTCATG.................................................................................................................................................................................261.000.00----1.00--------------------------------
........................................................................................................................................................................................................................TGACTGGTCCTGTGGCTCAGCCC...........231.000.00-1.00-----------------------------------
................................................ATTCTTTTTCTTTTTCTTTTTTTCTC................................................................................................................................................................................261.000.001.00------------------------------------
................................................ATTCTTTTTCTTTTTCTTTTGCGG..................................................................................................................................................................................241.000.00-1.00-----------------------------------
................................................ATTCTTTTTCTTTTTCTTTTTGTA..................................................................................................................................................................................241.000.00-1.00-----------------------------------
....................................................................................................................................................................................................................................TGGCTCAGCTCTACAGGCCC..201.000.00----------------1.00--------------------
.............................................AACATTCTTTTTCTTTTTCTTTTTG....................................................................................................................................................................................251.000.001.00------------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTCCGG...............................................................................................................................................................................291.000.001.00------------------------------------
...............................................CATTCTTTTTCTTTTTCG.........................................................................................................................................................................................181.000.00--1.00----------------------------------
....................................................................................................................................................................................................................................TGGCTCAGCTCTACAGTCAC..201.000.00---------------------------1.00---------
..............................................ACATTCTTTTTCTTTTTCTTCTCT....................................................................................................................................................................................241.000.001.00------------------------------------
...................................................CTTTTTCTTTTTCTTTTTTTAAATTTG............................................................................................................................................................................271.000.00--1.00----------------------------------
..............................................ACATTCTTTTTCTTTTTCTTTTTTTTG.................................................................................................................................................................................271.000.00----1.00--------------------------------
.................................................TTCTTTTTCTTTTTCTACTA.....................................................................................................................................................................................201.000.00----------------------1.00--------------
..............................................ACATTCTTTTTCTTTTTCTTTTTCTC..................................................................................................................................................................................261.000.00-1.00-----------------------------------
..............................................ACATTCTTTTTCTTTTTCGG........................................................................................................................................................................................201.000.00----1.00--------------------------------
..............................................ACATTCTTTTTCTTTCG...........................................................................................................................................................................................171.000.00----1.00--------------------------------
..............................................ACATTCTTTTTCTTTTTCTCTC......................................................................................................................................................................................221.000.001.00------------------------------------
..............................................ACATTCTTTTTCTTTTATTG........................................................................................................................................................................................201.000.00----1.00--------------------------------
.........................................................................................GCAGTCAGGACTCTGGATCCTCTTGTC......................................................................................................................................2711.001.00-------------1.00-----------------------
....................................................TTTTTCTTTTTCTTTTTTTAAATATG............................................................................................................................................................................261.000.00----1.00--------------------------------
................................................ATTCTTTTTCTTTTTCTTTTTGATC.................................................................................................................................................................................251.000.001.00------------------------------------
................................................................................GAATGTCTGGCAGTC...........................................................................................................................................................1550.200.20------------------------------------0.20
.............................................................................................................................AGTCTGATAATGAGG..............................................................................................................1560.170.17------------0.17------------------------

Antisense strand
GACACTTTTTGAACTAAAGTAAAATTGGTTCAGTTATTCATCAAAAACATTCTTTTTCTTTTTCTTTTTTTAAAAAACAGGAATGTCTGGCAGTCAGGACTCTGGATCCTCTTGTCAATACCTCCAGTCTGATAATGAGGAAGTGTTTCCCAAAAAATCGACTGCCACTCCCAACAATTAAAAGTTCTTTTCATTTCCAGTTGCCTGTTATTCCTGTGACTGGTCCTGTGGCTCAGCTCTACAGCTTACC
..............................................((((((((.((.(((..........))).)).))))))))(((.....))).........................................................................................................................................................
............................................45.......................................................102..................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................TTAAAAGTTCTTTTCAGAG...................................................... 198.000.00------1.00---1.00-1.00--------1.00----1.00-1.00-1.00----1.00-
................................................................................................................................................................................ATTAAAAGTTCTTTTCAGAG...................................................... 202.000.00---------2.00---------------------------
.................................................................................................................................................................................TTAAAAGTTCTTTTCATAAAG.................................................... 211.000.00----------1.00--------------------------
....................................................................................................................................................................................AAAGTTCTTTTCATTTCCAGTTGCCG............................................ 261.000.00---------------------------------1.00---
...................................................................................................................................ATAATGAGGAAGTGTTTTA.................................................................................................... 191.000.00-------1.00-----------------------------
.........TGAACTAAAGTAAAATTAA.............................................................................................................................................................................................................................. 191.000.00-------1.00-----------------------------
.................................................................................................................................................................................TTAAAAGTTCTTTTCGAGA...................................................... 191.000.00-------------------------1.00-----------
.......................................................................................................................................................................................................................................CTCAGCTCTACAGCTGACT 191.000.00---------------1.00---------------------
...........................GTTCAGTTATTCATCTCTG............................................................................................................................................................................................................ 191.000.00------------------1.00------------------
....................................................................................................................................................................................AAAGTTCTTTTCATTTGAAA.................................................. 201.000.00------------------------1.00------------
.........ATTTTACTTTAGTTCA................................................................................................................................................................................................................................. 1660.170.17-------0.17-----------------------------