ID: uc010mlc.2_intron_5_0_chr9_35826159_r.5p
GENE: C9orf128(1)
chr9:35828260-35828509-


(2)
B-CELL
(1)
BREAST
(9)
CELL-LINE
(1)
LIVER
(3)
OTHER
(5)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GTCAAGGTCTTGACCTAAGGACTTGTAACAACCAAGCCAAAGCCCAGAGGGTAGGTGGTTTCTCCAACGGCCCTTGCCCTCTTCCCTCAAAGACATCTGTCTTTCTCCCACCCCTCAGTCCCTTCACATTGTTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGAGACAGAGTCTCGCTCTGTCCCCCAGGC
............................................................................................................................................((.((.((.((.((.((....)).)).)).)).)).))........................................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR343335SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
................................................................................................................................................AGTAGTAGTAGTAGTAGGGCT.....................................................................................2130.000.0010.00-20.00-------------------------
.................................................................................................................................................................TAGTAGTAGTAGTAGTAGGGCT...................................................................2220.000.0020.00---------------------------
.....................................................................................................................................................TAGTAGTAGTAGTAGTAGTAGTAGTAGCATT......................................................................3114.000.00-14.00--------------------------
...............................................................................................................................................................AGTAGTAGTAGTAGTAGTAGGGCT...................................................................249.000.00----9.00-----------------------
.........................................................................................................................................TAGTAGTAGTAGTAGTAGTAGGGCT........................................................................................259.000.00----9.00-----------------------
.............................................................................................................................................AGTAGTAGTAGTAGTAGTAGGGC......................................................................................239.000.009.00---------------------------
....................................................................................................................................TGTAGTAGTAGTAGTAGTACAG................................................................................................224.000.00------4.00---------------------
................................................................................................................................................................................................................................ACAGAGTCTCGCTCTGTCCCCCAGGTC271.000.00---------1.00------------------
.................................................................................................................................................................................AGTTGTTGTTGTTGTTGTTGGGC..................................................231.000.00-1.00--------------------------
....................................................................................................................................................................................................................................AGTCTCGCTCTGTCCCCTTGG.211.000.00---------1.00------------------
.................................................................................................................................................................................AGTTGTTGTTGTTGTTGTAAAA...................................................221.000.00----------------------1.00-----
...................................................................................................................................TTGTAGTAGTAGTAGTAGGT...................................................................................................201.000.00--------------------1.00-------
....................................................................................................................................TGTAGTAGTAGTAGTGC.....................................................................................................171.000.00---------------1.00------------
.................................................................................................................................................................................AGTTGTTGTTGTTGTTGTTGTTGTCTGC.............................................281.000.00-1.00--------------------------
....................................................................................................................................................................................................................................AGTCTCGCTCTGTCCCCCAGGCGGA251.000.00-1.00--------------------------
.TCAAGGTCTTGACCTAAGG......................................................................................................................................................................................................................................1911.001.00-------------------------1.00--
..........................................................................................................................................................................................................GTTGTTGTTGTTGTTGTTTGAGACGGG.....................271.000.00------------1.00---------------
................................................................................................................................................................................................................................ACAGAGTCTCGCTCTGTCCCCCGGGC261.000.00-1.00--------------------------
...................................................................................................................................TTGTAGTAGTAGTAGTAGTAGCACG..............................................................................................251.000.00-1.00--------------------------
....................................................................................................................................TGTAGTAGTAGTAGTAGTAGTACAG.............................................................................................251.000.00-----------1.00----------------
.................................................................................................................................................................................AGTTGTTGTTGTTGTTGGGC.....................................................201.000.00-1.00--------------------------
.................................................................................................................................................................................AGTTGTTGTTGTTGTTGCTTT....................................................211.000.00-1.00--------------------------
................................................................................................................................................................................TAGTTGTTGTTGTTGGG.........................................................171.000.00-----------------------1.00----
.................................................................................................................................TGTTGTAGTAGTAGTAGTAGTAGCACG..............................................................................................271.000.00---------1.00------------------
..............................................................................................................................CATTGTTGTAGTAGTTCTA.........................................................................................................191.000.00-----------------1.00----------
....................................................................................................................................TGTAGTAGTAGTAGTATAG...................................................................................................191.000.00-----------1.00----------------
.........................................................................................................................................................................GTAGTAGTAGTTGTTTGG...............................................................181.000.00------------1.00---------------
................................................................................................................................................................................TAGTTGTTGTTGTTGTTGTTGTTGTTCG..............................................281.000.00-1.00--------------------------

Antisense strand
GTCAAGGTCTTGACCTAAGGACTTGTAACAACCAAGCCAAAGCCCAGAGGGTAGGTGGTTTCTCCAACGGCCCTTGCCCTCTTCCCTCAAAGACATCTGTCTTTCTCCCACCCCTCAGTCCCTTCACATTGTTGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGAGACAGAGTCTCGCTCTGTCCCCCAGGC
............................................................................................................................................((.((.((.((.((.((....)).)).)).)).)).))........................................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783SRR343335SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR553576(SRX182782)
source: Testis. (testes)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
...............................................................................................................................................................AGTAGTAGTAGTAGTAGTAGCT..................................................................... 2218.000.00---18.00------------------------
...................................................................................................................................................AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGCA..................................................................... 345.000.00-----5.00----------------------
........................................................................................................................................................................AGTAGTAGTAGTTGTTGTTGTTGG.......................................................... 244.000.00-------4.00--------------------
.......................................................................CCTTGCCCTCTTCCCTCACA............................................................................................................................................................... 203.000.00--------3.00-------------------
....................................................................................................................................................................................................................................AGTCTCGCTCTGTCCCCCAGGAA 232.000.00----------2.00-----------------
..................................................................................................................................................................................................................................AGAGTCTCGCTCTGTCCCCCAGGTA 251.000.00---------------------1.00------
..................................................................................................................................................................................................................................AGAGTCTCGCTCTGTCCCCCAGGTTTT 271.000.00------------------1.00---------
..................................................................................................................................................................................................................................GCCTGGGGGACAGAGCGAGACTCT 2401.001.00----------------1.00-----------
....................................................................................................................................................................................................................................AGTCTCGCTCTGTCCCCCAGAT 221.000.00--------------1.00-------------
......................................................................................................................................................................................................................................TCTCGCTCTGTCCCCCAAGA 201.000.00-------------1.00--------------
............................................................TCTCCAACGGCCCTTCC............................................................................................................................................................................. 171.000.00------------------------1.00---
........................................................................................................................................................................................................................TGTTTGAGACAGAGTCTCGCTCTGTTATG..... 291.000.00--------------------------1.00-
......................................................................................................................................................................................................................................TCTCGCTCTGTCCCCCAAGC 201.000.00-------------------1.00--------
...............................................................................................................GTGAAGGGACTGAGGG........................................................................................................................... 1680.120.12---------------------------0.12