ID: uc010mih.14
GENE: C9orf93(15)
chr9:15729408-15729657+


(2)
AGO2.ip 		(5)
B-CELL 		(7)
BRAIN 		(4)
BREAST 		(10)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
OTHER 		(9)
SKIN

Sense strand
CACAATTTTCTGCTAACGTGTGGCAGTTTACACTGCTATTTTCTTTTTTTAAATTTCTTTATTTACATTTTATGTTAAAATTTTTATATGATCTTAAGGAATAAAATATAGTAGGACATTTTGGGTATTTTATTGGGGGAGATGACACAAAGAAATAGCTTGTGAGCATATTTCCTTCTCTGTTGCATCTCCCCGTATAGATAAGGCATCTAGAGTATATCTGTAAAAACAAGTCTGACACGATGAGAGA
.......................................................................................................................................(((((((((..(((..(((((((((....))).))))))......)))..)))))))))........................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
.....................................ATTTTCTTTTTTTAACTCG..................................................................................................................................................................................................1916.000.007.00-6.002.00-1.00------------------------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTAT....................................................22113.0013.00-2.00--2.00-----2.00----1.00-------1.00------1.001.00---1.00----1.001.00------
.....................................................................................................................................TGGGGGAGATGACACAAAGA.................................................................................................2016.006.00---------------------1.001.00---------1.00-1.00--1.00------1.00---
.....................................................................................................................................TGGGGGAGATGACACAAAGAAA...............................................................................................2215.005.00-4.00-------------------------1.00--------------------
....................................................................................................................................................................................................ATAGATAAGGCATCTGAC....................................182.000.00------------1.00--------------------------1.00--------
...............................................................................................................................................................................TTCTCTGTTGCATCTCCCCGTAT....................................................2312.002.00----------------------------1.00---------1.00---------
...............................................................................................................................................................................TTCTCTGTTGCATCTCCCCGT......................................................2112.002.00----1.00----------------------------------------1.00--
............................................TTTTTTAAATTTCTTTATTTACATTTTATG................................................................................................................................................................................3012.002.00-----2.00------------------------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGT......................................................2011.001.00------------1.00-----------------------------------
....................................................................................................................................TTGGGGGAGATGACACAAAGAA................................................................................................2211.001.00----------------1.00-------------------------------
.....................................ATTTTCTTTTTTTAACGG...................................................................................................................................................................................................181.000.00-----------------------------1.00------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCTTAT....................................................221.000.00--------1.00---------------------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTATAG..................................................2411.001.00------------------1.00-----------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTATA...................................................2311.001.00----------------------------------------------1.00-
................................................................................................................................................................................TCTCTGTTGCATCTCCCCGTT.....................................................2111.001.00------------------------1.00-----------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCCG.......................................................1911.001.00------------------------------------------1.00-----
.....................................ATTTTCTTTTTTTAAATTTCTTCTTT...........................................................................................................................................................................................261.000.00-------------------1.00----------------------------
..........................................CTTTTTTTAAATTTCTCCAG............................................................................................................................................................................................201.000.00------------------------------------1.00-----------
........................................................................................................................TTGGGTATTTTATTGTTTA...............................................................................................................191.000.00---------------------------------1.00--------------
.....................................................................................................................................TGGGGGAGATGACACAAAGAAAT..............................................................................................2311.001.00--------1.00---------------------------------------
.....................................................................................................................................................................................................................................CAAGTCTGACACGATG.....1611.001.00-------------1.00----------------------------------
................................................................................................................................................................................TCTCTGTTGCATCTCCCGTAT.....................................................211.000.00-----------1.00------------------------------------
.....................................................................................................................................TGGGGGAGATGACACAAAGAA................................................................................................2111.001.00---------1.00--------------------------------------
......................................................................................................................................................................................................................GTATATCTGTAAAAAC....................1630.330.33-----------------------------------------------0.33

Antisense strand
CACAATTTTCTGCTAACGTGTGGCAGTTTACACTGCTATTTTCTTTTTTTAAATTTCTTTATTTACATTTTATGTTAAAATTTTTATATGATCTTAAGGAATAAAATATAGTAGGACATTTTGGGTATTTTATTGGGGGAGATGACACAAAGAAATAGCTTGTGAGCATATTTCCTTCTCTGTTGCATCTCCCCGTATAGATAAGGCATCTAGAGTATATCTGTAAAAACAAGTCTGACACGATGAGAGA
.......................................................................................................................................(((((((((..(((..(((((((((....))).))))))......)))..)))))))))........................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
..................................................................................................................................................................TGAGCATATTTCCTTCTA...................................................................... 183.000.00------3.00-----------------------------------------
..................................................................................................................................................................TGAGCATATTTCCTTAGC...................................................................... 183.000.00--------------1.00--1.00-------------------------1.00----
.................GTGTGGCAGTTTACATCAG...................................................................................................................................................................................................................... 192.000.00-------1.00---1.00------------------------------------
......................................................................................................AAAATATAGTAGGACTACA................................................................................................................................. 191.000.00--------------------------1.00---------------------
..............................................TTTTAAATTTCTTTATTAAG........................................................................................................................................................................................ 201.000.00-------1.00----------------------------------------
...............................................................................................................................................................................TTCTCTGTTGCATCTAGAT........................................................ 191.000.00---------1.00--------------------------------------
...................................................................................................AATAAAATATAGTAGGATAT................................................................................................................................... 201.000.00---1.00--------------------------------------------
.............................ACACTGCTATTTTCTGTTC.......................................................................................................................................................................................................... 191.000.00-------------------------1.00----------------------