ID: uc010mct.2_intron_6_0_chr8_110656946_r.3p
GENE: (1)
chr8:110656896-110657145-


(5)
AGO2.ip
(3)
B-CELL
(3)
BRAIN
(7)
BREAST
(19)
CELL-LINE
(4)
CERVIX
(3)
HEART
(2)
HELA
(1)
KIDNEY
(3)
LIVER
(1)
OTHER
(13)
SKIN
(1)
XRN.ip

Sense strand
GAGGGAGGGCGTGGGAGGCGCCCCAGGAGCTGCCTCTAGCGAGTGCGGCACCACGTGTCCGGCCGGGGCGGGGTCGGGCGTGCCCTCGGAGCCCAGAGCAATCGGCGGCAGTGGCGGCGGCGGCGCGTTGGAGCCTCACCAAGAGCCGCCGCCCGCAGCCCGCGCCGGCTCAGCGCAGTCTCCTCGCTCCGTGCTCGCAGGTGCCTCCTCCTGGACGGCGGCAGCGGCGGCGCGAGGAGCCGGCGGGCAG
.................................................................................(((.(((..(((..((....))...)))..))).)))((((((...((((.......))))..))))))....................................................................................................
...............................................................................80....................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM956925PAZD5SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR040027(GSM532912)
G220T. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR343334SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040011(GSM532896)
G529T. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM339996(GSM339996)
hues6Neuron. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
TAX577579(Rovira)
total RNA. (breast)
..............................................................................................................................GTTGGAGCCTCACCAAGAGC........................................................................................................20114.0014.00-6.006.00---2.00------------------------------------------------------
.........................................................................................................CGGCAGTGGCGGCGGCG................................................................................................................................1704.004.001.00---1.00----1.00--------1.00------------------------------------------
..........................................................................................................................GCGCGTTGGAGCCTCAAA..............................................................................................................184.000.00---4.00---------------------------------------------------------
..........................................................................................................GGCAGTGGCGGCGGCGGC..............................................................................................................................1803.003.003.00------------------------------------------------------------
.......................................................................................................................................................................................................................CGGCGGCAGCGGCGGCG..................1702.002.00----1.00--------------------------------1.00-----------------------
....................................................................................CTCGGAGCCCAGAGCAATCGG.................................................................................................................................................2112.002.00--------------2.00----------------------------------------------
.........................................................................................................CGGCAGTGGCGGCGGCGGCGGGG..........................................................................................................................232.000.001.00---1.00--------------------------------------------------------
...............................................................................................................................................................................................................CTCCTGGACGGCGGCAGCGG.......................2012.002.00------1.00-------------------------------------1.00----------------
...................................................................................................................GGCGGCGGCGCGTTGGGTC....................................................................................................................191.000.00----------------------------------------1.00--------------------
...............................................................................................................................................................................................................CTCCTGGACGGCGGCAGCGGCGGC...................2411.001.00-------1.00-----------------------------------------------------
..............................................................CCGGGGCGGGGTCGGCG...........................................................................................................................................................................171.000.00-------------------------------------------------1.00-----------
..............................................................................................................................................................................................................................AGCGGCGGCGCGAGGAGCCGGC......2211.001.00---1.00---------------------------------------------------------
............................................................................................................CAGTGGCGGCGGCGGCGG............................................................................................................................181.000.001.00------------------------------------------------------------
......................................................................................................................................................................................................................ACGGCGGCAGCGGCGGGAAA................201.000.00-------------1.00-----------------------------------------------
...............................................................................................GAGCAATCGGCGGCAGGG.........................................................................................................................................181.000.00----------1.00--------------------------------------------------
...............................................................................................................................................................................................................CTCCTGGACGGCGGCAGCG........................1911.001.00----------------------------------------------1.00--------------
...............................................................................................GAGCAATCGGCGGCAGTG.........................................................................................................................................1811.001.00----------1.00--------------------------------------------------
............................................................................................................CAGTGGCGGCGGCGGCGGGGG.........................................................................................................................211.000.00-----------1.00-------------------------------------------------
.............................CTGCCTCTAGCGAGTGCGGCACCACGT..................................................................................................................................................................................................2711.001.00--------------------------------------1.00----------------------
............................................................................................................................GCGTTGGAGCCTCACCAAGAGCC.......................................................................................................2311.001.00-----1.00-------------------------------------------------------
................................................................................................................................................................................................................TCCTGGACGGCGGCAGCGGC......................2011.001.00------------1.00------------------------------------------------
....................................................................................................................GCGGCGGCGCGTTGGAGC....................................................................................................................1811.001.00---------------------------------1.00---------------------------
...................................................................................................................................................................................CTCCTCGCTCCGTGCTCGCAGGTGCCTCCTC........................................3111.001.00------------------------1.00------------------------------------
.........................................................................................................................................................................................GCTCCGTGCTCGCAGGTT...............................................181.000.00-----------------------------1.00-------------------------------
.........................................................................................................CGGCAGTGGCGGCGGC.................................................................................................................................1601.001.00---------1.00---------------------------------------------------
...............................................................................................................................................................................................................CTCCTGGACGGCGGCAGCGGCGGCGCGAGGAG...........3211.001.00-----------------------------------------------1.00-------------
................................................................................................................................................................................................GCTCGCAGGTGCCTCCT.........................................1711.001.00---------------------------------------1.00---------------------
..............................................................................................................................GTTGGAGCCTCACCAAGAGCCGCC....................................................................................................2411.001.00---------------1.00---------------------------------------------
...........................................................................................................GCAGTGGCGGCGGCGGCGG............................................................................................................................1901.001.00----1.00--------------------------------------------------------
............................................................................................................................................................................................................CTCCTCCTGGACGGCGGC............................1811.001.00-----1.00-------------------------------------------------------
...........................................................................................................GCAGTGGCGGCGGCGGCG.............................................................................................................................1801.001.00-----------1.00-------------------------------------------------
........................................................GTCCGGCCGGGGCGGTTG................................................................................................................................................................................181.000.00--1.00----------------------------------------------------------
..................................................................................................................CGGCGGCGGCGCGTTGGAGC....................................................................................................................2011.001.00--------------------1.00----------------------------------------
.........................................................................................................................................ACCAAGAGCCGCCGCCCGCAG............................................................................................2111.001.00-------------------------------------------1.00-----------------
...............................................................................................................................................................................................................CTCCTGGACGGCGGCAGCGGC......................2111.001.00--------1.00----------------------------------------------------
......................................................................................................................................................................................................................................CGCGAGGAGCCGGCGACG..181.000.00----------------1.00--------------------------------------------
..........................................................................................................GGCAGTGGCGGCGGCG................................................................................................................................1601.001.001.00------------------------------------------------------------
.............................................................................................................................................AGAGCCGCCGCCCGCAAGA..........................................................................................191.000.00-------------------------------1.00-----------------------------
....................................................................................................................GCGGCGGCGCGTTGGAGCCTCACCAAGAGCC.......................................................................................................3111.001.00------------------------------------------------1.00------------
..........................................................................................................GGCAGTGGCGGCGGCGG...............................................................................................................................1701.001.001.00------------------------------------------------------------
................................................................................................................................................................................AGTCTCCTCGCTCCGTGCTCGCAGGTGC..............................................2811.001.00----------------------------------1.00--------------------------
....................................................................................CTCGGAGCCCAGAGCAATCGGC................................................................................................................................................2211.001.00---------------------------------------------1.00---------------
...............................................................................................................................TTGGAGCCTCACCAAGAGC........................................................................................................1911.001.00----------------------------1.00--------------------------------
.............................................................................................................................................................................................................................CAGCGGCGGCGCGAGGAGCCGG.......2211.001.00-------------1.00-----------------------------------------------
.......................................................................................................................................................................................................................CGGCGGCAGCGGCGGAAGA................191.000.00-----------------------------------1.00-------------------------
..................................................................................................................................................................................................................CTGGACGGCGGCAGCGGC......................1830.670.67----------------------------------------------------0.330.33-------
.....................................................................................................................................................................................................................GACGGCGGCAGCGGCGGC...................1840.500.50----0.50--------------------------------------------------------
..................................................................................................................................................................................................................CTGGACGGCGGCAGCG........................1630.330.33-------------------------------------------------------0.33-----
..................................................................................................................................................................................................................CTGGACGGCGGCAGCGGCGG....................2030.330.33------0.33------------------------------------------------------
...................................................................................CCTCGGAGCCCAGAGC.......................................................................................................................................................1640.250.25----------------------------------------------------------0.25--
......................................................................................................CGGCGGCAGTGGCGGCGGCG................................................................................................................................2070.140.140.14------------------------------------------------------------
.......................................................................................................GGCGGCAGTGGCGGCGGCGG...............................................................................................................................2090.110.11------------------0.11------------------------------------------

Antisense strand
GAGGGAGGGCGTGGGAGGCGCCCCAGGAGCTGCCTCTAGCGAGTGCGGCACCACGTGTCCGGCCGGGGCGGGGTCGGGCGTGCCCTCGGAGCCCAGAGCAATCGGCGGCAGTGGCGGCGGCGGCGCGTTGGAGCCTCACCAAGAGCCGCCGCCCGCAGCCCGCGCCGGCTCAGCGCAGTCTCCTCGCTCCGTGCTCGCAGGTGCCTCCTCCTGGACGGCGGCAGCGGCGGCGCGAGGAGCCGGCGGGCAG
.................................................................................(((.(((..(((..((....))...)))..))).)))((((((...((((.......))))..))))))....................................................................................................
...............................................................................80....................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM956925PAZD5SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR040027(GSM532912)
G220T. (cervix)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR343334SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040011(GSM532896)
G529T. (cervix)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM339996(GSM339996)
hues6Neuron. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
TAX577579(Rovira)
total RNA. (breast)
...............................................................................................................................................................................CACGGAGCGAGGAGACTG......................................................... 1812.002.00------------------------------1.00-------------------1.00----------
..........................................................................................................................................CCAAGAGCCGCCGCCCG............................................................................................... 172.000.00-------2.00-----------------------------------------------------
.................AGAGGCAGCTCCTGGGGCGC..................................................................................................................................................................................................................... 2012.002.00-----2.00-------------------------------------------------------
.................................................................................TGCTCTGGGCTCCGAGGGC...................................................................................................................................................... 1911.001.00------------------------------------1.00------------------------
........................................................................................................................................CACCAAGAGCCGCCGCCTG............................................................................................... 191.000.00------------------------------------------1.00------------------
...................................................................................................................................................................................................................................CGGCGCGAGGAGCCGGG...... 171.000.00-----------------------------------------1.00-------------------
..........................................................................................................................................................................................................................CGGCAGCGGCGGCGCAACA............. 191.000.00-------------------1.00-----------------------------------------
...................................................................................................................................................................................................................TGGACGGCGGCAGCGTCC..................... 181.000.00--------------------------------1.00----------------------------
..................................................................................................................................................................GAGACTGCGCTGAGCCGGCG.................................................................... 2011.001.00---------------1.00---------------------------------------------
.....................................................................................................................................GGGCGGCGGCTCTTGGTGAGG................................................................................................ 2111.001.00---------------------1.00---------------------------------------
.................................................................................CGATTGCTCTGGGCTCCGAGGGC.................................................................................................................................................. 2311.001.00-1.00-----------------------------------------------------------
................................................................................................................................................................................AGTCTCCTCGCTCCGTGAAC...................................................... 201.000.00--------1.00----------------------------------------------------
............................................................................................................................................................GAGACTGCGCTGAGCCGGCGCGGGCT.................................................................... 2611.001.00------------1.00------------------------------------------------
...............................CGGACACGTGGTGCCGCACTCGCTAGAGGC............................................................................................................................................................................................. 3011.001.00----------------------1.00--------------------------------------
...................................................................................................................................................CGGCGCGGGCTGCGGGCGGC................................................................................... 2011.001.00---------------------------1.00---------------------------------
...........................................................................................................................................CAAGAGCCGCCGCCCGTTT............................................................................................ 191.000.00--------------------------1.00----------------------------------
.......................................................................................................................................................................................CACCTGCGAGCACGGAGCGA............................................... 2011.001.00-1.00-----------------------------------------------------------
...........................................................................................................................................................................................................................GGCAGCGGCGGCGCGCTG............. 181.000.00----------------1.00--------------------------------------------
.................................................................................................................................................CCGCCGCCCGCAGCCAG........................................................................................ 171.000.00-----------------1.00-------------------------------------------
........GCGTGGGAGGCGCCCGCG................................................................................................................................................................................................................................ 181.000.00-----------------------1.00-------------------------------------
................................................................................................................................................................................AGTCTCCTCGCTCCGAGCA....................................................... 191.000.00-------------------------1.00-----------------------------------
...................................................................................................................................................GCGCGGGCTGCGGGCGGC..................................................................................... 1840.750.75---------------------------------------------------0.50-------0.25-
..................................................................................................................................................GCGCGGGCTGCGGGCGGCG..................................................................................... 1930.330.33------------------------------------------------------0.33------
...................................................................................................................................................................................................................CCGCTGCCGCCGTCCA....................... 1630.330.33--------------------------------------------------------0.33----
.......................................................................................................................................................CGGCGCGGGCTGCGGG................................................................................... 1640.250.25---------------------------------------------------------0.25---
....................................................................................................................................................GCGCGGGCTGCGGGCGG..................................................................................... 1740.250.25------------------------------------------------------------0.25
...............................................................................................................................................................................................................................CTCCTCGCGCCGCCGC........... 1670.140.14-----------------0.14-------------------------------------------