ID: uc010lwk.2_intron_15_0_chr8_38287467_r.5p
GENE: (3)
chr8:38297624-38297873-


(1)
AGO1.ip
(1)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(41)
BREAST
(37)
CELL-LINE
(17)
CERVIX
(9)
HEART
(2)
HELA
(6)
LIVER
(2)
OTHER
(1)
RRP40.ip
(74)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GGATTTCGGTGAGATGCTTCTGCACTCTGGCCGGGTCCTGCCAGCCGAAGGTAAGTTTTCAGTTCCATTTCAAAGCCAAAATACGTAATAAAAAAACCTCTGCAGAGGGCCCCCGGAGCCCCGCTGCGCTGTTCTGTGCTCCTTTTAAGTTGCTTTCAAAGCCACCCCGAGTTCCTCCCCCACCCACAATTGCCCCCTCATTTATCTCTGGGGAGTTTATACCAAGACTGTAAACATTCCTGGACCACCA
........................................................................................................(((((.....(((((..((..((((......)))).........((.(((.....))).))..)).))))).....((........))..)))))...................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532880(GSM532880)
G659T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040018(GSM532903)
G701N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR040032(GSM532917)
G603N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
............................................................................................................GCCCCCGGAGCCCCGCGG............................................................................................................................18896.7574.756.004.253.885.004.002.500.122.882.503.122.002.502.623.501.501.881.881.752.381.501.501.501.750.880.750.120.381.380.620.751.500.881.001.121.000.751.500.620.750.381.38-1.38-0.380.120.88-0.750.38--0.620.750.750.880.620.620.50---0.50-0.50-0.120.500.250.250.25--0.250.75-----0.250.380.120.250.50-0.380.120.25--0.380.120.250.25-0.380.250.120.250.12--0.250.250.25-0.12----0.120.25-0.25---0.12-----0.12-0.12-0.120.25-0.250.12----------0.12--------0.12------0.120.12-0.12---0.12----0.12-------0.12-0.12--------0.120.120.12-
............................................................................................................GCCCCCGGAGCCCCGC..............................................................................................................................16874.7574.753.883.752.121.752.383.50-2.122.001.752.502.122.121.252.381.621.251.38-1.002.001.621.501.252.000.250.121.250.620.880.881.001.000.880.251.500.501.500.380.120.750.120.38-0.25-0.88-0.500.88--0.380.620.880.380.500.250.38---0.501.250.62--0.500.38-0.38---0.12----0.880.380.12-0.380.25--0.50------0.25-0.120.250.38-0.12--------0.38--0.25------0.12-------0.12---0.25----------0.12-------0.12-0.12---------0.12----------------------0.12----0.12----
............................................................................................................GCCCCCGGAGCCCCGCGGA...........................................................................................................................19844.0074.751.251.122.501.120.751.250.121.250.620.880.880.380.620.250.250.500.620.750.500.620.380.120.500.380.620.252.500.250.880.250.620.500.500.750.380.250.120.250.121.380.120.120.380.500.62-0.25-0.500.62--0.500.250.120.120.120.380.500.120.25-0.12-0.120.25-0.120.120.250.12--0.38----0.620.120.120.38---0.250.12-0.120.250.380.120.120.12-0.25---0.120.12-0.12--0.120.38-0.38-0.380.25--0.250.120.250.12--0.250.250.25-0.12-0.12-0.12----0.12--0.120.120.120.12-0.12---0.12-0.12-------0.12-0.120.12-----0.120.120.12-0.120.12-0.12-0.12-0.12-0.12-----0.12---0.12-0.12----0.12
............................................................................................................GCCCCCGGAGCCCCGCGGAC..........................................................................................................................20829.0074.750.750.120.620.620.75--0.750.500.751.000.120.380.380.250.620.500.250.250.120.120.50--0.25-0.620.500.380.250.250.620.380.120.120.120.500.120.250.620.120.120.251.75--0.12-0.250.12--0.380.12-0.380.380.380.120.250.120.380.25---0.120.120.250.500.25--0.250.12---0.25---0.620.12-0.380.12-0.120.25--0.120.12-0.25---0.12-0.380.120.120.12--0.25---0.12-0.120.12--0.120.25----0.250.120.120.12-0.120.12----0.25-----0.12--0.12--0.12-0.120.12-0.12--0.12----0.12----------0.12---0.12-0.12-0.12--0.12--0.12-0.12-0.12------
..............................................................................................................CCCCGGAGCCCCGCTGACGC........................................................................................................................207.000.00-----------1.00-------------1.00--1.00---------1.00--1.00---------1.00--------------1.00--------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................GGCCCCCGGAGCCCCGCGG............................................................................................................................195.000.00------2.00--------------------------------------2.00-------------------------1.00---------------------------------------------------------------------------------------------------------------------------
...........................................................................................................GGCCCCCGGAGCCCCGCGGA...........................................................................................................................203.000.00------3.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................GGCCCCCGGAGCCCCGCGGAC..........................................................................................................................212.000.00------1.00----------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCTGACGC........................................................................................................................222.000.00-------------------------1.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................CCTCCCCCACCCACAAATT..........................................................191.000.00--------------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................CCCGGAGCCCCGCTGACAC........................................................................................................................191.000.00--------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................CCCGGAGCCCCGCTGACG.........................................................................................................................181.000.00---------------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
...TTTCGGTGAGATGCTTCTGCACTCTGGC...........................................................................................................................................................................................................................2811.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CCCCGGAGCCCCGCTGAC..........................................................................................................................181.000.00---------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................AACATTCCTGGACCAGGTG191.000.00-----------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................CCCGGAGCCCCGCTGAC..........................................................................................................................171.000.00----------------------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TCTGGGGAGTTTATACCAAGACTGTAAAC...............2911.001.00-----------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
................................GGGTCCTGCCAGCCGAAGTTA.....................................................................................................................................................................................................211.000.00-----------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGGGG............................................................................................................................181.000.001.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................GGCCCCCGGAGCCCCACGG............................................................................................................................191.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCCCCGGAGCCCCGCTGCC..........................................................................................................................191.000.00------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................CCCCGAGTTCCTCCCG......................................................................161.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................GGCCCCCGGAGCCCCCCCG............................................................................................................................191.000.00-----------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................CCCGGAGCCCCGCTGACGC........................................................................................................................191.000.00-----------------------------------------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
......CGGTGAGATGCTTCTGC...................................................................................................................................................................................................................................1711.001.00--------1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CCCCGGAGCCCCGCTGACG.........................................................................................................................191.000.00-------------------1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGGC...........................................................................................................................1980.6274.75------------0.12-----0.25----------0.12----------------------------------------------------------0.12----------------------------------------------------------------------------------------------------------
.............................................................................................................CCCCCGGAGCCCCGCTGACGC........................................................................................................................2150.600.20-------------0.20---------0.20---0.20-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGGAA..........................................................................................................................2080.5074.75------------------0.12------------------------------------------------------0.12----0.12-------------0.12------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCT.............................................................................................................................1720.500.50------------------0.50--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCCCCGGAGCCCCGCTGACG.........................................................................................................................2050.400.20----------------0.20---------------------------------------------------------------0.20------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGT............................................................................................................................1880.3874.750.12--------------0.12--0.12--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGGCC..........................................................................................................................2080.2574.75------------0.12-----------------------------------------------------------------------------------------------------------------------------------------------0.12--------------------------------------
.............................................................................................................CCCCCGGAGCCCCGCTG............................................................................................................................1750.200.20---------------------------------------------------------------------------------------------------------------------------------------0.20-----------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGGAT..........................................................................................................................2080.1274.75----------------------------------------------------------------------------------0.12----------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGTA...........................................................................................................................1980.1274.75------------------0.12--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGGG...........................................................................................................................1980.1274.75------------------------------------------------------------------------------------------0.12--------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGGT...........................................................................................................................1980.1274.75----0.12----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGA............................................................................................................................1880.1274.75---0.12-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGCA...........................................................................................................................1980.1274.75-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.12---------------
............................................................................................................GCCCCCGGAGCCCCGCGGTT..........................................................................................................................2080.1274.750.12--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGTAC..........................................................................................................................2080.1274.75------------------------------------------------------------------------------------------------------0.12--------------------------------------------------------------------------------------------
............................................................................................................GCCCCCGGAGCCCCGCGAA...........................................................................................................................1980.1274.75-----------------0.12---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
GGATTTCGGTGAGATGCTTCTGCACTCTGGCCGGGTCCTGCCAGCCGAAGGTAAGTTTTCAGTTCCATTTCAAAGCCAAAATACGTAATAAAAAAACCTCTGCAGAGGGCCCCCGGAGCCCCGCTGCGCTGTTCTGTGCTCCTTTTAAGTTGCTTTCAAAGCCACCCCGAGTTCCTCCCCCACCCACAATTGCCCCCTCATTTATCTCTGGGGAGTTTATACCAAGACTGTAAACATTCCTGGACCACCA
........................................................................................................(((((.....(((((..((..((((......)))).........((.(((.....))).))..)).))))).....((........))..)))))...................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532880(GSM532880)
G659T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577579(Rovira)
total RNA. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191636(GSM715746)
105genomic small RNA (size selected RNA from . (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577742(Rovira)
total RNA. (breast)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR040018(GSM532903)
G701N. (cervix)
SRR040040(GSM532925)
G612N. (cervix)
SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191491(GSM715601)
150genomic small RNA (size selected RNA from . (breast)
GSM532874(GSM532874)
G699T. (cervix)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR040008(GSM532893)
G727N. (cervix)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
GSM532890(GSM532890)
G576T. (cervix)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)
SRR040032(GSM532917)
G603N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532887(GSM532887)
G761N. (cervix)
SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
.........................................................................................AAAAAAACCTCTGCAGATTT............................................................................................................................................. 202.000.00--------------------------------------------------2.00------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TTATACCAAGACTGTACTGA.............. 201.000.00----------------------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................ATTGTGGGTGGGGGAGGAACTCGG............................................................ 2411.001.00-----------------------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------
...................................TCCTGCCAGCCGAAGGGCG.................................................................................................................................................................................................... 191.000.00------------------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------------------