ID: uc010lsu.2_intron_0_0_chr8_15967728_r.5p
GENE: (9)
chr8:15977727-15977976-


(4)
AGO2.ip
(3)
B-CELL
(1)
BRAIN
(7)
BREAST
(17)
CELL-LINE
(3)
CERVIX
(1)
HEART
(2)
HELA
(5)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
GGGATACCCAGGTGTTCAAGCCGTGCACAAGGCAGCTCACTTTGGACAAGGTAATTTAAAGAAAATCTTGTGAGGTTTGTTGTTGTTGTTTCAGACAGAGTCTCATTCTGTCGCCCAGACTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGCGATTCTCCTCCCTTAGCCTGCCTAGTAGCTGGGACTACAGCCGCGCGCCACCACACCCGGCTCATTTTTTGTAT
...............................................................................................................................(((((((.((....)))).)))))...............(((.((....))...)))..................................................................
...............................................................................................................................128..........................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
....................................................................................................................................GCGCGATCTCGGCTCACTGCAT................................................................................................2217.000.00--7.00-3.004.00--1.00-1.00--------1.00---------------------------
.............................................................................................................................TGCAGTGGCGCGATCTCGGCTAT......................................................................................................237.000.00--1.003.00------------2.00---------------------------1.00--
....................................................................................................................................GCGCGATCTCGGCTCACTGCATAA..............................................................................................245.000.00---3.00-------------1.001.00----------------------------
....................................................................................................................................GCGCGATCTCGGCTCACTGCATAAT.............................................................................................253.000.00---3.00-------------------------------------------
............................AAGGCAGCTCACTTTGGACAAGG.......................................................................................................................................................................................................2312.002.00------------1.00-------1.00--------------------------
.............................................................................................................................TGCAGTGGCGCGATCTCGGCTAGA.....................................................................................................242.000.00-------1.00-----------------------1.00---------------
..........................................................................................................................................................................................................AGCTGGGACTACAGCCGCGCCATG........................242.000.001.001.00---------------------------------------------
......................................................................................................................ACTGGAGTGCAGTGGCGCGACGCA............................................................................................................242.000.002.00----------------------------------------------
...................................................................................................................CAGACTGGAGTGCAGTGGCGCGAAA..............................................................................................................252.000.00------------------1.00---------------------1.00------
.......................................................................................................................................................................................................AGTAGCTGGGACTACAGCCGAGCC...........................241.000.001.00----------------------------------------------
............................................................................................................TGTCGCCCAGACTGGAGTGCAGTGCGTG..................................................................................................................281.000.00-1.00---------------------------------------------
.............................................................................................................................TGCAGTGGCGCGATCTCGGCTAGAA....................................................................................................251.000.00-----------------------1.00-----------------------
.....................................................................................................................................CGCGATCTCGGCTCACTGCAACATA............................................................................................251.000.00-------------1.00---------------------------------
..............................................................................................................TCGCCCAGACTGGAGTGCAGCATG....................................................................................................................241.000.00-1.00---------------------------------------------
...............................GCAGCTCACTTTGGACACGG.......................................................................................................................................................................................................201.000.00-----------------------------------1.00-----------
......................................................................................................................................................................GGATTCAAGCGATTCTAAT.................................................................191.000.00---------------------------------1.00-------------
........................................................................AGGTTTGTTGTTGTTGGGC...............................................................................................................................................................191.000.00-----------------------------------------1.00-----
.......................................................TTAAAGAAAATCTTGAGTG................................................................................................................................................................................191.000.00----------------------------------1.00------------
.....................................................................................................................................CGCGATCTCGGCTCACTGCAT................................................................................................211.000.00--1.00--------------------------------------------
..............................................................................................................................GCAGTGGCGCGATCTCGGCTAAAG....................................................................................................241.000.00--------------1.00--------------------------------
......................................................................................................................ACTGGAGTGCAGTGGCGCGATCTCGGCCA.......................................................................................................291.000.00-1.00---------------------------------------------
.......................................................................................................................................................................................................AGTAGCTGGGACTACAGCCTGGG............................231.000.001.00----------------------------------------------
............................................................................................................................................................TCTGCCTCCCGGATTCACGCC.........................................................................211.000.00---------------------------------------1.00-------
..............................................................................................................................GCAGTGGCGCGATCTCGGCTCAAAT...................................................................................................251.000.00------1.00----------------------------------------
...............................................................................................................................................................................................................................CCACCACACCCGGCTCATTTAAA....231.000.00---------1.00-------------------------------------
..............................................................................................................TCGCCCAGACTGGAGTGCTGC.......................................................................................................................211.000.001.00----------------------------------------------
..................................................................................................................CCAGACTGGAGTGCAGAGCG....................................................................................................................201.000.00---------------------1.00-------------------------
.....................................................................................................................................................................................................................CAGCCGCGCGCCACCCCGG..................191.000.00------------------------1.00----------------------
............................................................................................................................................TCGGCTCACTGCAACCTCTGCCTCGAAG..................................................................................281.000.001.00----------------------------------------------
..............................................................................................................................GCAGTGGCGCGATCTCGGCTAGA.....................................................................................................231.000.00--------------------------------------1.00--------
.........................CACAAGGCAGCTCACTTT...............................................................................................................................................................................................................1811.001.00-------------1.00---------------------------------
..............................................................................................................TCGCCCAGACTGGAGTGCAGCGGA....................................................................................................................241.000.001.00----------------------------------------------
....................................................................................................................AGACTGGAGTGCAGTGGCGCGACCCC............................................................................................................261.000.00-1.00---------------------------------------------
.........................................................................................................................................ATCTCGGCTCACTGCAACCTCTGCGCG......................................................................................271.000.001.00----------------------------------------------
............................................................................................................................GTGCAGTGGCGCGATCTCGGCTCACTCC..................................................................................................281.000.00-----1.00-----------------------------------------
.............................................................................................................................................CGGCTCACTGCAACCTCTGCCTCCCGGATT...............................................................................3001.001.00----1.00------------------------------------------
.....................................................................................................................................CGCGATCTCGGCTCACTGCATAGA.............................................................................................241.000.00---------------------1.00-------------------------
.............................................................................................................GTCGCCCAGACTGGAGTGCAGTGAC....................................................................................................................251.000.00----1.00------------------------------------------
....................................................................................................................................GCGCGATCTCGGCTCACTGCATAAA.............................................................................................251.000.00-----------------1.00-----------------------------
....................................................................................................................................GCGCGATCTCGGCTCACTGCAACCGGAC..........................................................................................281.000.00--------------------1.00--------------------------
.......................................................................................................................................................................................................AGTAGCTGGGACTACAGCCGGG.............................221.000.001.00----------------------------------------------
........................................................................................................ATTCTGTCGCCCAGACTGGAGTGCAGTAG.....................................................................................................................291.000.00-1.00---------------------------------------------
.........................................................................................................................................ATCTCGGCTCACTGCAACCTCTGCCTCGCTC..................................................................................311.000.00-1.00---------------------------------------------
......................................................................................................................ACTGGAGTGCAGTGGCGCGATCTCGCCTT.......................................................................................................291.000.00-1.00---------------------------------------------
.....................................................................................................................................CGCGATCTCGGCTCACTGCATTTT.............................................................................................241.000.00------1.00----------------------------------------
.....................................................................................................................................................................................................................CAGCCGCGCGCCACCACGG..................191.000.00---------------1.00-------------------------------
............................................................................................................................................TCGGCTCACTGCAACCTCTGCCTCCCGGCTG...............................................................................311.000.001.00----------------------------------------------
..........................................................................................................TCTGTCGCCCAGACTGGAGTGCAGTGGCCCC.................................................................................................................311.000.001.00----------------------------------------------
..............................................................................................................TCGCCCAGACTGGAGTGCAGGGGG....................................................................................................................241.000.00-1.00---------------------------------------------
....................................................................................................................................GCGCGATCTCGGCTCACTGCATAT..............................................................................................241.000.00----------1.00------------------------------------
.......................................................................................................................................................................................................AGTAGCTGGGACTACAGCCCACG............................231.000.001.00----------------------------------------------
.......................................................TTAAAGAAAATCTTGTGAGGTT.............................................................................................................................................................................2211.001.00-------------------------------------1.00---------
.....................................................................................................................................CGCGATCTCGGCTCACTGCATTA..............................................................................................231.000.00--1.00--------------------------------------------
...............................GCAGCTCACTTTGGACAAGG.......................................................................................................................................................................................................2011.001.00------------1.00----------------------------------
................................................................................................................................AGTGGCGCGATCTCGGCTCAAATA..................................................................................................241.000.00--------------------------------1.00--------------
.............................................................................................................GTCGCCCAGACTGGAGTGCTCTG......................................................................................................................231.000.00--------------1.00--------------------------------
......................................................................................................................................................GCAACCTCTGCCTCCCGGACTCC.............................................................................231.000.00-1.00---------------------------------------------
...........................................................................................................................AGTGCAGTGGCGCGATCTCGGCTCACTGGCTC...............................................................................................321.000.00-1.00---------------------------------------------
.......................................................................GAGGTTTGTTGTTGTTGTGGA..............................................................................................................................................................211.000.00-----------------------------1.00-----------------
............................................................................................................................................TCGGCTCACTGCAACCTCTGCCTCCCGCAAG...............................................................................311.000.001.00----------------------------------------------
...................................................................................................................CAGACTGGAGTGCAGTGGCGCGTC...............................................................................................................241.000.00------------------------------------------1.00----
.........................................................................................................................................................................................................TAGCTGGGACTACAGCCGCGCCATG........................251.000.001.00----------------------------------------------
.........................................................................................................................................................................................................TAGCTGGGACTACAGCCGCCTC...........................221.000.00-1.00---------------------------------------------
..........................................................................................................................................................................................................AGCTGGGACTACAGCCGCGTCA..........................221.000.001.00----------------------------------------------
................................................................................................................................AGTGGCGCGATCTCGGCTCAATT...................................................................................................231.000.00-------------------------------------------1.00---
..............................................................................................................TCGCCCAGACTGGAGTGCAGTGTGCC..................................................................................................................261.000.00-1.00---------------------------------------------
.......................TGCACAAGGCAGCTCACTTT...............................................................................................................................................................................................................2011.001.00------------1.00----------------------------------
...........................................................................................................................................................................................................GCTGGGACTACAGCCGCGCAAC.........................221.000.001.00----------------------------------------------
............................................................................................................TGTCGCCCAGACTGGAGTGCAGTGGCGGTG................................................................................................................301.000.00-1.00---------------------------------------------
....................................................................................................................................GCGCGATCTCGGCTCACTGGGGC...............................................................................................231.000.00-------------------1.00---------------------------
......................GTGCACAAGGCAGCTCAC..................................................................................................................................................................................................................1820.500.50---------------------------------------------0.50-
..........................................................................................................................................................................................................AGCTGGGACTACAGCCGCGCGCCACCA.....................2740.250.25-0.25---------------------------------------------
.........................................................................................................TTCTGTCGCCCAGACTGGAGTGCAGTGGCGCG.................................................................................................................3260.170.17-0.17---------------------------------------------
............................................................................................................................................................................................................CTGGGACTACAGCCGCGCGCCACC......................2460.170.170.17----------------------------------------------

Antisense strand
GGGATACCCAGGTGTTCAAGCCGTGCACAAGGCAGCTCACTTTGGACAAGGTAATTTAAAGAAAATCTTGTGAGGTTTGTTGTTGTTGTTTCAGACAGAGTCTCATTCTGTCGCCCAGACTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGCGATTCTCCTCCCTTAGCCTGCCTAGTAGCTGGGACTACAGCCGCGCGCCACCACACCCGGCTCATTTTTTGTAT
...............................................................................................................................(((((((.((....)))).)))))...............(((.((....))...)))..................................................................
...............................................................................................................................128..........................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM532874(GSM532874)
G699T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR040031(GSM532916)
G013T. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
......................................................................................................................................................GCAACCTCTGCCTCCCGGAGAGC............................................................................. 232.000.002.00----------------------------------------------
...........................................................................................................................................CTCGGCTCACTGCAACCTCTGCCTCCCGGAGCC.............................................................................. 332.000.00-2.00---------------------------------------------
.................................................................................................................................................................AGAATCGCTTGAATCCGGGAG.................................................................... 2102.002.00-----------2.00-----------------------------------
...................................................................................................................CAGACTGGAGTGCAGTGGCGCGAAAGT............................................................................................................ 272.000.00------2.00----------------------------------------
...................................................................................................................................GGCGCGATCTCGGCTCACTGTA................................................................................................. 222.000.00-------2.00---------------------------------------
...................................................................................................................................................................GGAGAATCGCTTGAATCCGGG.................................................................. 2102.002.00----1.001.00-----------------------------------------
..................AGCCGTGCACAAGGCAGCTAGGA................................................................................................................................................................................................................. 231.000.00---------------1.00-------------------------------
.............................................................................................GACAGAGTCTCATTCTGTCGCCCAGACC................................................................................................................................. 281.000.00-1.00---------------------------------------------
...............................................................................................................................................GCTCACTGCAACCTCTGCCTCCCGGATTGCG............................................................................ 311.000.001.00----------------------------------------------
.........................................................................................................................................................ATCGCTTGAATCCGGGAGGCAGAGGT....................................................................... 2601.001.00--------1.00--------------------------------------
..............................................................................................................................................GGCTCACTGCAACCTCTGCCTCCCGGATTCTG............................................................................ 321.000.001.00----------------------------------------------
.................................................................................................................................................................ATCGCTTGAATCCGGGAG....................................................................... 1801.001.00--------1.00--------------------------------------
.....................................................................................................................................................TGCAACCTCTGCCTCCCGGATTTCG............................................................................ 251.000.001.00----------------------------------------------
...................................................................................................................................................................CCCGGATTCAAGCGATTCTCCGGA............................................................... 241.000.00------------------------------------1.00----------
.................................................................................................................................................................................................................................AAATGAGCCGGGTGTGGT....... 1801.001.00-----------1.00-----------------------------------
...................................................................................................................................GGCGCGATCTCGGCTCACTTTGA................................................................................................ 231.000.00---------------------------1.00-------------------
......................................................................................................................................................GCAACCTCTGCCTCCCGGATTCAAGCGAGAGC.................................................................... 321.000.00-1.00---------------------------------------------
.....................................................................................................................................................TGCAACCTCTGCCTCCCGGATTCCG............................................................................ 251.000.00-1.00---------------------------------------------
.........................................................................................................................................................ACCTCTGCCTCCCGGATTCAAGCGATTCC.................................................................... 291.000.001.00----------------------------------------------
..............................................................................................................................................................TGCCTCCCGGATTCAAGCGATTCTCCAC................................................................ 281.000.00----------------------------1.00------------------
...............................................................................................................CGCCCAGACTGGAGTGCAGTTT..................................................................................................................... 221.000.00-------------------------1.00---------------------
........................................................................................................ATTCTGTCGCCCAGACTGGAGTGCTTTG...................................................................................................................... 281.000.00---------1.00-------------------------------------
..........................................................................................................................................................CCTCTGCCTCCCGGATGAGG............................................................................ 201.000.001.00----------------------------------------------
....................................................................................................................................................CTGCAACCTCTGCCTCCCGGAGGGC............................................................................. 251.000.00-1.00---------------------------------------------
...............................................................................................................................................................GCCTCCCGGATTCAAGTG......................................................................... 181.000.00----------1.00------------------------------------
....................................................................................................................................................................................................................ACAGCCGCGCGCCACTCCC................... 191.000.00--------------------------1.00--------------------
.........................................................................................................................................................................................................................CGCGCGCCACCACACCCGGCTCCCG........ 251.000.00-1.00---------------------------------------------
..................................................................................................................................................CACTGCAACCTCTGCCTCCCGGATGCG............................................................................. 271.000.00-1.00---------------------------------------------
.....................................................................................................................GACTGGAGTGCAGTGGCGCGATGGGC........................................................................................................... 261.000.00-1.00---------------------------------------------
.....................................................................................................................................................................................................................CAGCCGCGCGCCACCACACTC................ 211.000.00----------------------1.00------------------------
.........................................................................................................................................................................TTCAAGCGATTCTCCTCCAGTT........................................................... 221.000.00------------------------------1.00----------------
..............................................................................................................................................GGCTCACTGCAACCTCTGCCTCCCGGATCTG............................................................................. 311.000.001.00----------------------------------------------
.................................................................................................................................................TCACTGCAACCTCTGCCTCCCGGATAGCG............................................................................ 291.000.001.00----------------------------------------------
...........................................................................................................CTGTCGCCCAGACTGGAGTGCAGTGGGTAA................................................................................................................. 301.000.00---------1.00-------------------------------------
.......................................................................................................................................................CAACCTCTGCCTCCCGGATTGAAC........................................................................... 241.000.001.00----------------------------------------------
.........................................................................................................................................................................................................................CGCGCGCCACCACACCCGGCTCATCCTG..... 281.000.00-1.00---------------------------------------------
....................................................................................................................................................................................................................TGTGGTGGCGCGCGGCTGT................... 1960.170.17----------------------0.17------------------------
........................................................................................................................................................................................................................TGTGGTGGCGCGCGG................... 1560.170.17----------------------------------------------0.17