ID: uc010lse.2_intron_5_0_chr8_12049351_r.5p
GENE: (1)
chr8:12051284-12051533-


(4)
B-CELL
(1)
BRAIN
(1)
BREAST
(20)
CELL-LINE
(4)
CERVIX
(1)
HEART
(1)
HELA
(2)
LIVER
(3)
OTHER
(1)
RRP40.ip
(34)
SKIN
(1)
XRN.ip

Sense strand
TTGAGCGCCGCTTCCTGGCGGTGCGCACACTGCGCTCCTTCCCCTGGCAGGTGGGCGGCGGGGCGAGCGGAGAGGCCCGCGGGGGTCGCGGGAGTCCAGGGGCAGACGGGATGGGTCTCCGTGCTGAAACCCCCGGCGCTCCGGCCACGTGAGTTCCTGGGCTCTCCTCGGTCAGGGCCGCGAGACCCGGTCCCCGTCCCTGGGGCCTGGCCAGAGTCGCTCGCACCCCTTCTGCCCCGCGAGCTGGCGG
............................................((((.((..((((.(((((((.(((((((..((((((.....)))))).(((....)))............)))))))..))....))))).)))))).)))).......................................................................................................
............................................45........................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR029129(GSM416758)
SW480. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................GGTGGGCGGCGGGGCGGGGC.....................................................................................................................................................................................2034.000.00--6.003.003.00--2.002.002.001.002.00-2.00-1.00--1.00-1.00--1.00-----1.001.00------1.00---1.001.001.001.00------------------------------
..................................................GTGGGCGGCGGGGCGGGGC.....................................................................................................................................................................................1912.000.00---1.001.003.00-1.00--1.00---------------1.00----1.00--1.00-1.00---1.00----------------------------------
............................................................................................AGTCCAGGGGCAGACGGGATGGGTCTCCGCGC..............................................................................................................................322.000.00----------------2.00----------------------------------------------------------
...................................................TGGGCGGCGGGGCGAGG......................................................................................................................................................................................172.000.00------2.00--------------------------------------------------------------------
.................................................................................................................................CCCCCGGCGCTCCGGGCC.......................................................................................................182.000.00---1.00--------------------1.00--------------------------------------------------
.................................................GGTGGGCGGCGGGGCGT........................................................................................................................................................................................171.000.00------------1.00--------------------------------------------------------------
.................................................................................................................................CCCCCGGCGCTCCGGGC........................................................................................................171.000.00---------------1.00-----------------------------------------------------------
....................................................GGGCGGCGGGGCGAGCC.....................................................................................................................................................................................171.000.00---------------------------------1.00-----------------------------------------
..................................................GTGGGCGGCGGGGCGGA.......................................................................................................................................................................................171.000.00------1.00--------------------------------------------------------------------
.............................................GGCAGGTGGGCGGCGGGT...........................................................................................................................................................................................181.000.00---------------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................GGGGCCTGGCCAGAGTTGAT.............................201.000.00----------------------------1.00----------------------------------------------
.............................................................................CGCGGGGGTCGCGGGATCG..........................................................................................................................................................191.000.00----------------------1.00----------------------------------------------------
...............................................................................................................................................................................GGCCGCGAGACCCGGAG..........................................................171.000.00------------1.00--------------------------------------------------------------
..............................................................................GCGGGGGTCGCGGGATTGC.........................................................................................................................................................191.000.00--------------------------------------1.00------------------------------------
.........................................................................................................................................................TTCCTGGGCTCTCCTCTG...............................................................................181.000.00---------------------1.00-----------------------------------------------------
.................................................GGTGGGCGGCGGGGCGGGGG.....................................................................................................................................................................................201.000.00--------------------------------1.00------------------------------------------
............................................................................CCGCGGGGGTCGCGGGAC............................................................................................................................................................181.000.00-------------------1.00-------------------------------------------------------
..........................................................................................GGAGTCCAGGGGCAGACGGGATGGGTCCCCG.................................................................................................................................311.000.00---------------------------------------1.00-----------------------------------
..................................................GTGGGCGGCGGGGCGAGCGTA...................................................................................................................................................................................211.000.00-----------------------------------1.00---------------------------------------
.....................................................................................................................................................................................................................GAGTCGCTCGCACCCCTTCCCGT..............231.000.00--------------1.00------------------------------------------------------------
................................................................................................................................................................GCTCTCCTCGGTCAGGGCCGC.....................................................................2120.500.50-------------------------------------------------0.50-------------------------
.......................................................................................................................................................................................................................GTCGCTCGCACCCCTTCTGCC..............2140.250.25------------------------------------------------------0.25--------------------
........................................................................................................................................................................CGGTCAGGGCCGCGAGACCCGG............................................................2240.250.25----------------------------------------------------------0.25----------------
................................................................................................CAGGGGCAGACGGGATGGGTCTCC..................................................................................................................................2490.220.22-----------------------------------------------0.110.11--------------------------
...........................................CTGGCAGGTGGGCGGCGGGGCGAGCGGAGA.................................................................................................................................................................................3090.220.22------------------0.11----------------------------------0.11---------------------
................................................AGGTGGGCGGCGGGGCGAGCGGAGAGG...............................................................................................................................................................................2790.220.22-----------------------------------------------0.22---------------------------
...............................................................................................CCAGGGGCAGACGGGATGGGTCTCC..................................................................................................................................2590.220.22-------------------0.11------------------------------------------------0.11------
..............................................................................................TCCAGGGGCAGACGGGATGGGTCTCC..................................................................................................................................2690.220.22-----------------------------------------------------0.11--------------------0.11
.....................................................................................................................TCCGTGCTGAAACCCCCGGCG................................................................................................................2150.200.20-------------------------------------------------------------0.20-------------
................................................................................................................................................................................GCCGCGAGACCCGGTCCC........................................................1850.200.20--------------------------------------------------------0.20------------------
......................................................................................................................................................................................AGACCCGGTCCCCGTCCCTGGGG.............................................2360.170.17------------------------------------------------------0.17--------------------
.....................................................................................................GCAGACGGGATGGGTCTCCG.................................................................................................................................2080.120.12-----------------------------------------------------------------0.12---------
...............................................................................................CCAGGGGCAGACGGGATGGGTCTCCGTGC..............................................................................................................................2980.120.12-----------------------------------------------------0.12---------------------
..........................................CCTGGCAGGTGGGCGGCGGGGCGAGCGGAGA.................................................................................................................................................................................3190.110.11-----------------------------------------------------0.11---------------------
......................................TTCCCCTGGCAGGTGGGC..................................................................................................................................................................................................1890.110.11-----------------------------------------------------------------------0.11---
......................................................................................................................................................................................................CCTGGGGCCTGGCCAGAGTCGCTCGCAC........................2890.110.11---------------------------------------------------------0.11-----------------
...............................................CAGGTGGGCGGCGGGGCGAGCGG....................................................................................................................................................................................2390.110.11--------------------------------------------------------0.11------------------
.............................................GGCAGGTGGGCGGCGGGGCGAG.......................................................................................................................................................................................2290.110.11----------------------------------------------------------------------0.11----
............................ACTGCGCTCCTTCCCCTGGC..........................................................................................................................................................................................................2090.110.11-------------------------------------------------------------------------0.11-
.........................................CCCTGGCAGGTGGGCGGCG..............................................................................................................................................................................................1990.110.11--------------------0.11------------------------------------------------------
................................................AGGTGGGCGGCGGGGCGAG.......................................................................................................................................................................................1990.110.11-------------------------------------------------------0.11-------------------
..........................................................CGGGGCGAGCGGAGAGGCCCGCGG........................................................................................................................................................................2490.110.11---------------------------------------------------------------------0.11-----
.....................................................................................................GCAGACGGGATGGGTCTCC..................................................................................................................................1990.110.11-----0.11---------------------------------------------------------------------
..........................................CCTGGCAGGTGGGCGGCGGGGCGAGCGGAGAGGC..............................................................................................................................................................................3490.110.11-----------------------------------------------0.11---------------------------
....................................CCTTCCCCTGGCAGGTGGGCG.................................................................................................................................................................................................2190.110.11------------------------------------------------------------------------0.11--

Antisense strand
TTGAGCGCCGCTTCCTGGCGGTGCGCACACTGCGCTCCTTCCCCTGGCAGGTGGGCGGCGGGGCGAGCGGAGAGGCCCGCGGGGGTCGCGGGAGTCCAGGGGCAGACGGGATGGGTCTCCGTGCTGAAACCCCCGGCGCTCCGGCCACGTGAGTTCCTGGGCTCTCCTCGGTCAGGGCCGCGAGACCCGGTCCCCGTCCCTGGGGCCTGGCCAGAGTCGCTCGCACCCCTTCTGCCCCGCGAGCTGGCGG
............................................((((.((..((((.(((((((.(((((((..((((((.....)))))).(((....)))............)))))))..))....))))).)))))).)))).......................................................................................................
............................................45........................................................................................................151.................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR029129(GSM416758)
SW480. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................CCCGCGGGGGTCGCGGGG............................................................................................................................................................. 1828.000.0017.0011.00-------------------------------------------------------------------------
...........................................................................CCCGCGGGGGTCGCGGGGA............................................................................................................................................................ 198.000.006.002.00-------------------------------------------------------------------------
......................................................................................................................................................AGGAGAGCCCAGGAACTC.................................................................................. 1821.501.50-----------------1.50---------------------------------------------------------
..................................................................................................................GTCTCCGTGCTGAAAAG....................................................................................................................... 171.000.00--------------1.00------------------------------------------------------------
.................................................GGTGGGCGGCGGGGCGGGC...................................................................................................................................................................................... 191.000.00-1.00-------------------------------------------------------------------------
..........................................................................................................................GCTGAAACCCCCGGCGGCG............................................................................................................. 191.000.00-------------------------1.00-------------------------------------------------
............................................................................................................................................................................................................GCCTGGCCAGAGTCGCTCGA.......................... 201.000.00---------------------------------------------1.00-----------------------------
...............................................................................................................................................................................................................................CAGCTCGCGGGGCAGAAGGGGTG.... 2340.750.75----------------------------------------------0.75----------------------------
..............................................................................................................................................................................................................................CGGGGCAGAAGGGGTGC........... 1750.600.60------------------------------------------------0.20-----------0.20-0.20------------
................................................................................................................................................................GCGGCCCTGACCGAGGAGAGC..................................................................... 2120.500.50---------------------------------------------------0.50-----------------------
..........................................................................................................................................GAACTCACGTGGCCGGAG.............................................................................................. 1820.500.50----------------------------------------------------0.50----------------------
.......................................................................................................................................CCCAGGAACTCACGTGGCCGGAGCGC......................................................................................... 2620.500.50--------------------------------------------------0.50------------------------
...........................................................................CCCGCGGGGGTCGCGGGC............................................................................................................................................................. 180.250.00----------------------------------------------------------------0.12--0.12-------
..............................................................................................................................................................................................................................TCGCGGGGCAGAAGGGGTGC........ 2040.250.25------------------------------------------------0.25--------------------------
.................................................................................................................................................................................................................................CTCGCGGGGCAGAAGGGG....... 1840.250.25-------------------------------------------------------0.25-------------------
...........................................................................CGCGACCCCCGCGGG................................................................................................................................................................ 1580.250.25---------------------------------------------------------------0.12--0.12--------
..............................................................................................................................................................................................................................CAGCTCGCGGGGCAGAAGGGGTGC.... 2440.250.25-----------------------------------------------0.25---------------------------
..............................................................................................................................................................................GGGACCGGGTCTCGCGGCCC........................................................ 2050.200.20-----------------------------------------------------------0.20---------------
..............................................................................................................................................................................................................................GCGGGGCAGAAGGGGTGC.......... 1850.200.20------------------0.20--------------------------------------------------------
...............................................................................................................................................AGCCCAGGAACTCACGTGGC....................................................................................... 2060.170.17---------------------------------------------------------0.17-----------------
...........................................................................CCGCGACCCCCGCGGG............................................................................................................................................................... 1660.170.17-0.17-------------------------------------------------------------------------
.................................................................................................................................GCCGGAGCGCCGGGGG......................................................................................................... 1670.140.14-0.14-------------------------------------------------------------------------