ID: uc010liw.2_intron_8_0_chr7_102950923_f.3p
GENE: (9)
chr7:102952454-102952703+


(1)
AGO1.ip OTHER.mut
(2)
B-CELL
(2)
BREAST
(16)
CELL-LINE
(2)
CERVIX
(2)
HEART
(2)
HELA
(2)
LIVER
(5)
OTHER
(7)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CTTTGTTTTTACTACAAACAGCTGAATGACAGTGTCTTCCATATTTCAGGCTGTGAATGCTGAGACAATTCGAGAAGTATGTACCAAATACATTTATAATAGGAGTCCAGCTATTGCTGCTGTTGGTAAGCCTGGCTTCTTTTCTTCTATGCAAAAAGTTGGCCAAGTACTTTTAATTAACTCTTCTTTTTAATCCTTAGGTCCCATTAAGCAACTACCAGATTTTAAACAGATACGCAGTAACATGTGT
...................................................((((((((.((..((((((.....))).)))..))....))))))))........................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR189787SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................GTAAGCCTGGCTTCTTTTCTTCTATGCAAAAAGTTGGCCAAGTACTTTTAATTAACTCTTCTTTTTAATCCTTAG..................................................75118.0018.00--11.00-7.00------------------------------------
.......................................................................................................................................................................TACTTTTAATTAACTCTTCTTTTTAATCCTCAG..................................................3316.000.009.007.00---------------------------------------
........................................................................................................................................................................ACTTTTAATTAACTCTTCTTTTTAATCCTCAG..................................................328.000.003.005.00---------------------------------------
........................................................................................................................................................................ACTTTTAATTAACTCTTCTTTTTAATCCTTAG..................................................3217.007.002.001.00---4.00-----------------------------------
.................................GTCTTCCATATTTCAGGCTGTGAAT................................................................................................................................................................................................2517.007.00---6.00------------------------------1.00------
.......................................................................................................................................................................TACTTTTAATTAACTCTTCTTTTTAATCCTTAG..................................................3315.005.002.00-----------2.001.00---------------------------
...................................................TGTGAATGCTGAGACAATTCGA.................................................................................................................................................................................2213.003.00---------3.00-------------------------------
................................TGTCTTCCATATTTCAGGCTGTGAAT................................................................................................................................................................................................2613.003.00-------3.00---------------------------------
........................................................ATGCTGAGACAATTCGAGAAGTATG.........................................................................................................................................................................2512.002.00--------2.00--------------------------------
.......................................................................................................................................................................TACTTTTAATTAACTCTTCTTTTTAATCCCTAG..................................................332.000.001.001.00---------------------------------------
.................................................................................TACCAAATACATTTATAACAG....................................................................................................................................................212.000.00------2.00----------------------------------
.................................GTCTTCCATATTTCAGGCTGTGAGA................................................................................................................................................................................................252.000.00---------------2.00-------------------------
........................................................................................................................................................................ACTTTTAATTAACTCTTCTTTTTAATCCTAGG..................................................322.000.00-2.00---------------------------------------
............................................................TGAGACAATTCGAGAAGTATGTACC.....................................................................................................................................................................2511.001.00------------------------------------1.00----
.......................................................................................................................................................................TACTTTTAATTAACTCTTCTTTTTAATCCCTA...................................................321.000.001.00----------------------------------------
........................................................................................................................................................................ACTTTTAATTAACTCTTCTTTTTAATCCCTAG..................................................321.000.001.00----------------------------------------
......................................................................CGAGAAGTATGTACCAAA..................................................................................................................................................................1811.001.00-----------------------1.00-----------------
.......................................................................................................................................................................TACTTTTAATTAACTCTTCTTTTTAATCCTAG...................................................321.000.001.00----------------------------------------
...........................................................................................................................................................................TTTAATTAACTCTTCTTTTTAATCCTTAG..................................................2911.001.00-----------------1.00-----------------------
.............................................................................................................................................................................................................................ATTTTAAACAGATACGCAGTAAC......2311.001.00-------------------------1.00---------------
.........................................................................................ACATTTATAATAGGAGTCCAGCT..........................................................................................................................................2311.001.00---------------------------1.00-------------
...................................................................ATTCGAGAAGTATGTACC.....................................................................................................................................................................1811.001.00----------------1.00------------------------
........................................................................................................................................................................ACTTTTAATTAACTCCTG................................................................181.000.001.00----------------------------------------
.....................................................................................................................................................................................TCTTCTTTTTAATCCTTAGGTCCCATTAA........................................2911.001.00----------1.00------------------------------
.............................................................................................................................................................................................................................ATTTTAAACAGATACGCAGTAACAT....2511.001.00---------------------1.00-------------------
..........................................................GCTGAGACAATTCGAGAA..............................................................................................................................................................................1811.001.00------------------1.00----------------------
........................................................................................................................TGTTGGTAAGCCTGGCTTCTTTTCTTC.......................................................................................................2711.001.00--------------1.00--------------------------
...............................................................................................................................................................................................................................TTTAAACAGATACGCAGT.........1811.001.00--------------------1.00--------------------
.......................................................................................................................................................................TACTTTTAATTAACTCTTCTTTTTAATCCCCAG..................................................331.000.00-1.00---------------------------------------
...................................................TGTGAATGCTGAGACAATTCGAGA...............................................................................................................................................................................2411.001.00---------------------------------1.00-------
.............................................................................................................................................................................................TTAATCCTTAGGTCCCT............................................171.000.00-------------------------------1.00---------
......................................................................................................................................................................................................................................AGATACGCAGTAACAT....1611.001.00----------1.00------------------------------
.......................................................................................................................CTGTTGGTAAGCCTGAAGA................................................................................................................191.000.00--------------------------------1.00--------
..................................................................AATTCGAGAAGTATGTACC.....................................................................................................................................................................1911.001.00-----------1.00-----------------------------
........................................................................................................................TGTTGGTAAGCCTGGCTCCTT.............................................................................................................211.000.00------------------------1.00----------------
.................................................................................TACCAAATACATTTATAATAG....................................................................................................................................................2111.001.00-------------1.00---------------------------
...................................................................ATTCGAGAAGTATGTACCAAATACA..............................................................................................................................................................2511.001.00-----------1.00-----------------------------
................................................................................................................................................................................TTAACTCTTCTTTTTACTT.......................................................191.000.00----------1.00------------------------------
.........................................................................................................................................................................CTTTTAATTAACTCTTCTTTTTAATCCTTAG..................................................3111.001.001.00----------------------------------------
.......................................................................................................................................CTTCTTTTCTTCTATGCAAAAAG............................................................................................2311.001.00------1.00----------------------------------
....................................................................................................................................................................................................................AACTACCAGATTTTAAACAGA.................2111.001.00-----------------------------1.00-----------
.......................................................................................................................................................................TACTTTTAATTAACTCTTCTTTTTAATCCAG....................................................311.000.00-1.00---------------------------------------
.......................................CATATTTCAGGCTGTGAATGCTGA...........................................................................................................................................................................................2411.001.00-----------------------------------1.00-----
.....................................................................................................................................................................................TCTTCTTTTTAATCCTTAG..................................................1920.500.50-0.50---------------------------------------
......................................................................................................................................................................................CTTCTTTTTAATCCTTAG..................................................1820.500.50-------------------------------------0.50---
............................................................................................................AGCTATTGCTGCTGTTG.............................................................................................................................1740.500.50--------------------------------------0.250.25-
..................................................CTGTGAATGCTGAGAC........................................................................................................................................................................................1660.170.17--------------------------------------0.17--
...........................................TTTCAGGCTGTGAATG...............................................................................................................................................................................................1660.170.17----------------------------------------0.17

Antisense strand
CTTTGTTTTTACTACAAACAGCTGAATGACAGTGTCTTCCATATTTCAGGCTGTGAATGCTGAGACAATTCGAGAAGTATGTACCAAATACATTTATAATAGGAGTCCAGCTATTGCTGCTGTTGGTAAGCCTGGCTTCTTTTCTTCTATGCAAAAAGTTGGCCAAGTACTTTTAATTAACTCTTCTTTTTAATCCTTAGGTCCCATTAAGCAACTACCAGATTTTAAACAGATACGCAGTAACATGTGT
...................................................((((((((.((..((((((.....))).)))..))....))))))))........................................................................................................................................................
..................................................51....................................................105...............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189784SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR189787SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
..............................................................................................................CTTACCAACAGCAGCAATAG........................................................................................................................ 2014.004.00---4.00-------------------------------------
....................................................................................................................AAGCCAGGCTTACCAACAGCAG................................................................................................................ 2211.001.00----------------------------1.00------------
........................................................................................................................................................................................TGGGACCTAAGGATTAAAAAGA............................................ 2211.001.00--------1.00--------------------------------
...................................................................................................................................................................................TGGGACCTAAGGATTAAAAAGAAGAGT............................................ 2711.001.00------------------------------1.00----------
.............................................................................................................................................................................................................ATTAAGCAACTACCAGATTTGG....................... 221.000.00--------------------------1.00--------------
.....................................................................................................................................GGCTTCTTTTCTTCTGGTA.................................................................................................. 191.000.00----------------------1.00------------------
.............................................................................................................................................................................................................ATTAAGCAACTACCAGATCGGG....................... 221.000.00--------------1.00--------------------------
................................................................................................................................................................................................................AAGCAACTACCAGATGGG........................ 181.000.00-------------------1.00---------------------