ID: uc010lgo.1
GENE: C7orf43(2)
chr7:99753029-99753343-


(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(18)
B-CELL
(5)
BRAIN
(10)
BREAST
(35)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(3)
HELA
(8)
LIVER
(3)
OTHER
(2)
RRP40.ip
(27)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CGCTCACCTTCAGTGTGGCCTTCCAGGCTCTGAGGACGGGGCTCTTCGAGGTGGGCTGGGGAGGGTCTGGGCTGAGTGCTGAGTGATGCAGAATGCTGGGGTGGACGGAGGCAGGACCCTTAGATTTTGGGGATGAAATAAAAAGCTGGGCAGAGGGAAGGTGGGATTTAGATTTGACATCAGTCTGTCACATGGGGAAGACCATTTGGAAGGAGGCCTGGGTCCTGGAAGCCGAGCTGGCATGCTGACCTGTGTCTCCCCCCAGCTAAGCCAGCACATGAAACTGAAGCTGCAGTTCACCGCCAGCGTGTCCCA
....................................................................................................................................................((((((..((..((.((((....)))).)).))..))))))...(((((....((....))..((((((.((((((..((..(((.....)))...)))))))).)))))))))))...................................................
.......................................................................................................................................136..............................................................................................................................265................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR189784SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037935(GSM510473)
293cand3. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040025(GSM532910)
G613T. (cervix)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGA.................................................26154.006.00-5.00---4.00--1.002.001.001.00-3.00--1.00--2.00-3.00-3.00-------2.00--1.00-1.00--1.00-1.00-1.001.001.00-1.00----2.00--1.00----1.001.00-1.00---------------1.00------1.00-1.00---1.001.00-------1.00---1.00-1.00-1.00-1.00------1.00-1.00-
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGAA................................................27142.006.00-4.00--9.002.003.00--1.00-2.00------4.00---1.00------1.001.00------2.001.00---1.001.00---------------1.00--1.00-----------1.00-----1.00--1.00-1.00------------------1.00--------1.001.00-------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCAGAA................................................28133.003.00-1.0014.00--1.00----1.002.00--------3.00-----1.00-2.00--1.00--1.00-1.00-1.00----------1.00--------------------------1.00-1.00-------------------1.00-----------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCAGA.................................................27119.003.00-----2.00----3.00-----1.00---------1.00---1.00---------1.00------1.002.001.00----1.00------------1.00---------1.00-----------1.00--------------------------1.00--1.00--
............................................................................................................................................AAAAGCTGGGCAGAGAGGG............................................................................................................................................................1917.000.0010.00--6.001.00---------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGAGG.............................................................................................................................................................1811.000.009.00-----------1.00-----------------------------------------1.00-------------------------------------------------------------------
....................................................................................................................................................................................................................................................CTGACCTGTGTCTCCCCCCAGT.................................................2210.000.00--------6.00--------2.00----1.00-----------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................................TGCTGACCTGTGTCTCCCCCCAG..................................................2316.006.00------6.00-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAG..................................................2516.006.00--------------2.00-------1.00----------1.00-----------------------------------------------1.00------------------------1.00---------------
.....................TCCAGGCTCTGAGGACGGGG..................................................................................................................................................................................................................................................................................2015.005.00-------5.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................ATTTGGAAGGAGGCCTGGGTCA..........................................................................................2215.001.00-4.00--------------------------------------------------------------------------------1.00---------------------------------------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCTGGA......................................................................................2314.004.00---------------2.00--------2.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCT.........................................................................................2014.004.00-------------------------3.00----1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGAAG...............................................2814.006.00-2.00--------------2.00---------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGAAA...............................................2814.006.00---------1.00----------------1.00----------------------------------------------1.00---------------------1.00--------------------------
............................................................................................................................................AAAAGCTGGGCAGAGAGC.............................................................................................................................................................183.000.003.00-------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AAGGAGGCCTGGGTCCTGGAAGC...................................................................................2313.003.00---------------1.00-----------------2.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCAG..................................................2613.003.00--------------2.00-------------------------------------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................TTGGAAGGAGGCCTGGGC............................................................................................183.000.00-------3.00------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCTGGAT.....................................................................................2412.004.00--------------1.00-------------------------------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCC....................................................2312.002.00-1.00---------------------------------------------------------------------1.00--------------------------------------------------
...........................................................................................................................................................................................................ATTTGGAAGGAGGCCTGGGAAA..........................................................................................222.000.00---------2.00----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCAGAAA...............................................2912.003.00-----------1.00-----------------------------------------------------1.00--------------------------------------------------------
.......................................................................................................................................................................................TCTGTCACATGGGGAAGA..................................................................................................................1812.002.00--------------------------------------------------2.00-----------------------------------------------------------------------
....................................................................................................................................................................................................................................................CTGACCTGTGTCTCCCCCCAGA.................................................222.000.00------------------------------------------------------------------------------------------------1.00-----------1.00-------------
..................................................................................................................................................................................................................................................TGCTGACCTGTGTCTCCCCCCAGA.................................................2412.006.00-------------1.00---------------------------1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGT.................................................2612.006.00--------------------------------2.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................ATGCTGACCTGTGTCTCCCCCCAGAAAA..............................................282.000.00-------------2.00------------------------------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGGGCGA...........................................................................................................................................................2021.500.501.00---------------------------------0.50---------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGG.................................................2611.006.00--------------------------------1.00-----------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGAGAG............................................................................................................................................................191.000.00---1.00----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AAGGAGGCCTGGGTCCTGGAAT....................................................................................221.000.00------------------------------------------------------------------------------------------------------1.00-------------------
............................................................................................................................................AAAAGCTGGGCAGAGGGGCCA..........................................................................................................................................................2121.000.50------------1.00-------------------------------------------------------------------------------------------------------------
................................AGGACGGGGCTCTTCGAG.........................................................................................................................................................................................................................................................................1811.001.00---------------------------------------------------1.00----------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGGGGGCG..........................................................................................................................................................2121.000.501.00-------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGTA................................................2711.006.00----------------------------------------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................................................................TTGGAAGGAGGCCTGGGCAA..........................................................................................201.000.00------------------------------------------------------------------------------------1.00-------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGAT................................................2711.006.00-----------1.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................GCTGACCTGTGTCTCCCCCCAGAA................................................241.000.00---------------------------------------1.00----------------------------------------------------------------------------------
..................................................GTGGGCTGGGGAGGGTAATT.....................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------1.00-------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGGA................................................2711.006.00-------------------------------------------------------1.00------------------------------------------------------------------
.............................................................................................................................................................................................................TTGGAAGGAGGCCTGGGTCCCGGA......................................................................................241.000.00------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CTGACCTGTGTCTCCCCCCATT.................................................221.000.00---------------------1.00----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCAGCA................................................281.000.00--1.00-----------------------------------------------------------------------------------------------------------------------
.....................TCCAGGCTCTGAGGACGGGGCTCTTC............................................................................................................................................................................................................................................................................2611.001.00-----------------------------------------------------1.00--------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGAGGA............................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................ATTTGGAAGGAGGCCTGGGTC...........................................................................................2111.001.00----------1.00---------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................GCCGAGCTGGCATGCTGACCTGTG.............................................................2411.001.00-------------------------------------------------------------------------------------------1.00------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGAAGA..............................................2911.006.00-1.00------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCC.....................................................2311.001.00---------------------------------------------1.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................AAGGAGGCCTGGGTCCTGGA......................................................................................2011.001.00---------------------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCCG........................................................................................211.000.00---1.00----------------------------------------------------------------------------------------------------------------------
......................CCAGGCTCTGAGGACGGGGCTCTTCG...........................................................................................................................................................................................................................................................................2611.001.00--------------------------------------------------------------------------------------------------------------1.00-----------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCCGGA......................................................................................231.000.00------------1.00-------------------------------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGGGCGAT..........................................................................................................................................................2121.000.501.00-------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AAGGAGGCCTGGGTCCTGGAAGCC..................................................................................2411.001.00----------------------------------------------------------------------------------------------------1.00---------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGAAC...............................................2811.006.00--------------------------------------------1.00-----------------------------------------------------------------------------
....................TTCCAGGCTCTGAGGACGGGGCTCTTCGAG.........................................................................................................................................................................................................................................................................3011.001.00-------------------------------------------------------------------------------------------------------------------1.00------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCCGAG................................................2711.002.00----------1.00---------------------------------------------------------------------------------------------------------------
.....................TCCAGGCTCTGAGGACG.....................................................................................................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------1.00-----------------------------------------------------
.....................TCCAGGCTCTGAGGACGGGGCTCTTCG...........................................................................................................................................................................................................................................................................2711.001.00-------------------------------------------------------------------------------------------------1.00------------------------
..............................................................................................................................................................................................CATGGGGAAGACCATTTG...........................................................................................................1811.001.00-----------------1.00--------------------------------------------------------------------------------------------------------
..............................TGAGGACGGGGCTCTTCGAG.........................................................................................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------1.00----------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGAGAC............................................................................................................................................................191.000.00---1.00----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................GTCTCCCCCCAGCTAGCTG...........................................191.000.00-------------------1.00------------------------------------------------------------------------------------------------------
.....................TCCAGGCTCTGAGGACGGG...................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------------------------------------1.00-------------------------------------------------
..................................................GTGGGCTGGGGAGGGAGTT......................................................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------------------------1.00-------------------------------
.............................................................................................................................................AAAGCTGGGCAGAGGGCGA...........................................................................................................................................................191.000.00-------------------------------------------------------------------------------------------------------1.00------------------
..............GTGGCCTTCCAGGCTCTGAGGACG.....................................................................................................................................................................................................................................................................................2411.001.00------------------------------------------1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCCG..................................................261.000.00----------------------------------------------1.00---------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGTCG.............................................................................................................................................................181.000.00---1.00----------------------------------------------------------------------------------------------------------------------
......................................................................................TGCAGAATGCTGGGGTGGACGGAGGCAGGACCC....................................................................................................................................................................................................3311.001.00---------------------------------------------------------------------------------------1.00----------------------------------
.................................................................................................................................................................................................................................................ATGCTGACCTGTGTCTCCCCCCAGA.................................................251.000.00-----1.00--------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................AGGAGGCCTGGGTCCATCC......................................................................................191.000.00--------------------------------------------------------1.00-----------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCAGAG.................................................261.000.00----------------------------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCC......................................................2111.001.00---------------------------------------------------------------------------------------------------------------------1.00----
........................AGGCTCTGAGGACGGCTGC................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------------------------------------------------------1.00---------------------------
.............TGTGGCCTTCCAGGCTCTGAGGACG.....................................................................................................................................................................................................................................................................................2511.001.00-----------------------------1.00--------------------------------------------------------------------------------------------
.................................................GGTGGGCTGGGGAGGGTCTGGGC...................................................................................................................................................................................................................................................2311.001.00---------------------------------------------------------1.00----------------------------------------------------------------
......................................GGGCTCTTCGAGGTGGTGTC.................................................................................................................................................................................................................................................................201.000.00---------------------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCTGGAC.....................................................................................2411.004.00------------1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCTGT.......................................................................................221.000.00---------------1.00----------------------------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGAGGC............................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------------------------
.......................CAGGCTCTGAGGACGGGGCT................................................................................................................................................................................................................................................................................2011.001.00-------------------1.00------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CATGCTGACCTGTGTCTCCCCCCAGCG................................................271.000.00----------------------------------------------1.00---------------------------------------------------------------------------
..............................................................................................................................................................................................................TGGAAGGAGGCCTGGGTCCTGGAA.....................................................................................2411.001.00---------------------------------------------------------------------------------------------------1.00----------------------
..................................................GTGGGCTGGGGAGGGTCTGGGCTGAGTGC............................................................................................................................................................................................................................................2911.001.00--------------------1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGGGG.............................................................................................................................................................1821.000.501.00-------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................ATGCTGACCTGTGTCTCCCTTT....................................................221.000.00---------------------------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................................................TGACCTGTGTCTCCCCCCAGATT...............................................231.000.00-------1.00------------------------------------------------------------------------------------------------------------------
..................................................GTGGGCTGGGGAGGGAAT.......................................................................................................................................................................................................................................................181.000.00---------------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCCGCA................................................281.000.00----------------------------------------------------------------------------------------------------------------1.00---------
..............................................................................................................................................................................................................................................GGCATGCTGACCTGTGTCTCCCCCCAGAA................................................291.000.00---------1.00----------------------------------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGGGAGCCA.........................................................................................................................................................221.000.001.00-------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCATAA................................................281.000.00------------------------1.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................GCATGCTGACCTGTGTCTCCCCCCCGAA................................................281.000.00-----------------------------------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................................................................................TTGGAAGGAGGCCTGGGTCCTGGAAGC...................................................................................2711.001.00---------------------------1.00----------------------------------------------------------------------------------------------
.....................................................................................ATGCAGAATGCTGGGGTGGACGGA..............................................................................................................................................................................................................2411.001.00-----------------------------1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................AAGGAGGCCTGGGTCCTGGAAGCAG.................................................................................2511.003.00-----------------1.00--------------------------------------------------------------------------------------------------------
............................................................................................................................................AAAAGCTGGGCAGAGGG..............................................................................................................................................................1720.500.500.50-------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CTGGAAGCCGAGCTG............................................................................1580.120.12-------------------------------------------------------------------------------------------------------------------------0.12

Antisense strand
CGCTCACCTTCAGTGTGGCCTTCCAGGCTCTGAGGACGGGGCTCTTCGAGGTGGGCTGGGGAGGGTCTGGGCTGAGTGCTGAGTGATGCAGAATGCTGGGGTGGACGGAGGCAGGACCCTTAGATTTTGGGGATGAAATAAAAAGCTGGGCAGAGGGAAGGTGGGATTTAGATTTGACATCAGTCTGTCACATGGGGAAGACCATTTGGAAGGAGGCCTGGGTCCTGGAAGCCGAGCTGGCATGCTGACCTGTGTCTCCCCCCAGCTAAGCCAGCACATGAAACTGAAGCTGCAGTTCACCGCCAGCGTGTCCCA
....................................................................................................................................................((((((..((..((.((((....)))).)).))..))))))...(((((....((....))..((((((.((((((..((..(((.....)))...)))))))).)))))))))))...................................................
.......................................................................................................................................136..............................................................................................................................265................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR189784SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037935(GSM510473)
293cand3. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR040025(GSM532910)
G613T. (cervix)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040035(GSM532920)
G001T. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR038861(GSM458544)
MM466. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038856(GSM458539)
D11. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................................................................................................GGTCCTGGAAGCCGAGAAA............................................................................ 192.000.00-----------------------------------2.00--------------------------------------------------------------------------------------
......................................................GCTGGGGAGGGTCTGGG.................................................................................................................................................................................................................................................... 171.000.00---------------------------------------------------------------------------1.00----------------------------------------------
...........................................................................................................................................................................................TCACATGGGGAAGACGAG.............................................................................................................. 181.000.00--------------------------------------------------------1.00-----------------------------------------------------------------
...............................................................................................................................................................................................................CAGCTCGGCTTCCAGGACCCAGGCCTCCTTCC............................................................................ 3211.001.00------------1.00-------------------------------------------------------------------------------------------------------------