ID: uc010lad.2_intron_6_0_chr7_66025663_r.5p
GENE: (4)
chr7:66038172-66038421-


(1)
AGO2.ip
(9)
B-CELL
(3)
BRAIN
(2)
BREAST
(22)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(2)
LIVER
(2)
OTHER
(14)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CCACAGTGAAGAAATCTTCAGTACGTCTTCCAGGGTCGGATCAAAGAAGGGTAATGTTGTGATACTCTTTTTTTTCTTCTCTGCCTGAGTGAGACACAGAGGAGATCCCCAATGCTCATAGGCTCAGCTTTGTAATTTCTGTCAACTTTTTGAGAACATCAGCTCAGATTTGACACTGAAATTGGGTTTGAGGGTCAGACAGTATATGAAACCAATACTCTCTTTGGTTGAAAGATATTGTGTTTTAGAG
...........................................................(((..(((.......(((((((((.((.....))...)))))))))..((((((..(((.((((...)))).........((((((...((((((........)))))).)))))).))).))))))...)))..))).....................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038857(GSM458540)
D20. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.............................................................ATACTCTTTTTTTTCTTG...........................................................................................................................................................................1831.000.0018.007.005.00---1.00----------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTG..........................................................................................................................................................................1925.000.0010.0010.003.00---1.00---1.00------------------------------------------------------
..............................CAGGGTCGGATCAAAGAAGGCAG.....................................................................................................................................................................................................236.000.00-----6.00-----------------------------------------------------------
................................GGGTCGGATCAAAGAAGG........................................................................................................................................................................................................1844.254.25-------0.25-0.50-0.25----------------0.50-0.500.500.50-------0.25----0.25-0.25-0.25--0.25------------
.............................................................ATACTCTTTTTTTTCTTTAG.........................................................................................................................................................................204.000.002.001.00------1.00--------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTCTTTTG......................................................................................................................................................................234.000.00-2.00-1.00--1.00----------------------------------------------------------
.................................GGTCGGATCAAAGAAGG........................................................................................................................................................................................................1743.753.75---------1.25-1.25-0.25----------------------0.50-----0.25-------------0.25--------
.............................................................ATACTCTTTTTTTTCTCTTG.........................................................................................................................................................................203.000.001.001.00-1.00-------------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTCG..........................................................................................................................................................................193.000.001.001.00--------1.00------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTCTTG........................................................................................................................................................................212.000.001.001.00---------------------------------------------------------------
................................GGGTCGGATCAAAGAAG.........................................................................................................................................................................................................1741.751.75-----------0.25-0.50-------------0.50----------------------0.25----0.25---------
..................................GTCGGATCAAAGAAGG........................................................................................................................................................................................................1641.751.75----0.25--0.25-0.25---------------------------0.25-----0.25--------------0.25-0.25----
.............................................................ATACTCTTTTTTTTCTTTGAG........................................................................................................................................................................211.000.00---1.00-------------------------------------------------------------
......................ACGTCTTCCAGGGTCGGATCAAAGAAGGGCTGG...................................................................................................................................................................................................331.000.00--------------1.00--------------------------------------------------
...........................TTCCAGGGTCGGATCAAAGAAGGTGC.....................................................................................................................................................................................................261.000.00----1.00------------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTTCC........................................................................................................................................................................211.000.00---1.00-------------------------------------------------------------
.....................................................................TTTTTTCTTCTCTGCCACG..................................................................................................................................................................191.000.00-----------------1.00-----------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTTCG........................................................................................................................................................................211.000.001.00----------------------------------------------------------------
.................................................................TCTTTTTTTTCTTCTCTCCA.....................................................................................................................................................................201.000.001.00----------------------------------------------------------------
............................TCCAGGGTCGGATCAAAGAAGGGCT.....................................................................................................................................................................................................251.000.00----1.00------------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTCTTTGA......................................................................................................................................................................231.000.00---1.00-------------------------------------------------------------
.............................................................................................................................................................................CACTGAAATTGGGTTTGAGG.........................................................2011.001.00----------------1.00------------------------------------------------
............................TCCAGGGTCGGATCAAAGAAGGCAGT....................................................................................................................................................................................................261.000.00----1.00------------------------------------------------------------
.........................................................TGTGATACTCTTTTTTTCA..............................................................................................................................................................................191.000.00---------------------1.00-------------------------------------------
.............................................................ATACTCTTTTTTTTCGAG...........................................................................................................................................................................181.000.00---1.00-------------------------------------------------------------
...............................AGGGTCGGATCAAAGAAGGCAGA....................................................................................................................................................................................................2341.000.50----------------------1.00------------------------------------------
............................TCCAGGGTCGGATCAAAGAAGGTA......................................................................................................................................................................................................241.000.00------------1.00----------------------------------------------------
...............................AGGGTCGGATCAAAGAAGGATA.....................................................................................................................................................................................................2241.000.50------------------------1.00----------------------------------------
............................TCCAGGGTCGGATCAAAGAAGGGCTG....................................................................................................................................................................................................261.000.00----1.00------------------------------------------------------------
.........AGAAATCTTCAGTACGTCGATG...........................................................................................................................................................................................................................221.000.00------------------1.00----------------------------------------------
.......................CGTCTTCCAGGGTCGGATCAAAGAAGGATA.....................................................................................................................................................................................................301.000.00-------1.00---------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTAAG.........................................................................................................................................................................201.000.001.00----------------------------------------------------------------
......................ACGTCTTCCAGGGTCGGATCAAAGAAGG........................................................................................................................................................................................................2821.001.00---------------------------------0.500.50------------------------------
...............................AGGGTCGGATCAAAGAAGGGATC....................................................................................................................................................................................................231.000.00-------1.00---------------------------------------------------------
.........................................................TGTGATACTCTTTTTGCA...............................................................................................................................................................................181.000.00--------------------1.00--------------------------------------------
...........................TTCCAGGGTCGGATCAAAGAAGGATA.....................................................................................................................................................................................................261.000.00----1.00------------------------------------------------------------
..............................................................TACTCTTTTTTTTCTTCAC.........................................................................................................................................................................191.000.00---1.00-------------------------------------------------------------
................................................................CTCTTTTTTTTCTTCTAATG......................................................................................................................................................................201.000.001.00----------------------------------------------------------------
.............................CCAGGGTCGGATCAAAGAAGGC.......................................................................................................................................................................................................221.000.00---------------1.00-------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTTAT........................................................................................................................................................................211.000.00--1.00--------------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTCTG........................................................................................................................................................................211.000.001.00----------------------------------------------------------------
................................................................CTCTTTTTTTTCTTCTCTTG......................................................................................................................................................................201.000.00--1.00--------------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTATT........................................................................................................................................................................211.000.00------1.00----------------------------------------------------------
...................................................................TTTTTTTTCTTCTCTGGCTC...................................................................................................................................................................201.000.00---1.00-------------------------------------------------------------
.............................CCAGGGTCGGATCAAAGAAGGGCT.....................................................................................................................................................................................................241.000.00----1.00------------------------------------------------------------
............................TCCAGGGTCGGATCAAAGAAGGTT......................................................................................................................................................................................................241.000.00-----------------------1.00-----------------------------------------
.............................................................ATACTCTTTTTTTTCGTG...........................................................................................................................................................................181.000.00------1.00----------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTTA.........................................................................................................................................................................201.000.00-1.00---------------------------------------------------------------
.................................GGTCGGATCAAAGAAGGAT......................................................................................................................................................................................................1941.003.75-------------------1.00---------------------------------------------
.............................................................ATACTCTTTTTTTTCTTTAAG........................................................................................................................................................................211.000.00--1.00--------------------------------------------------------------
.............................................................ATACTCTTTTTTTTCTTCTTTA.......................................................................................................................................................................221.000.00--1.00--------------------------------------------------------------
............AATCTTCAGTACGTCTTCCAGGGTCGGATC................................................................................................................................................................................................................3020.500.50--------0.50--------------------------------------------------------
.................................GGTCGGATCAAAGAAGGGTAA....................................................................................................................................................................................................2140.500.50--------------------------0.50--------------------------------------
..............TCTTCAGTACGTCTTCCAGGGTCGG...................................................................................................................................................................................................................2520.500.50-----------------------------0.50-----------------------------------
...............................AGGGTCGGATCAAAGAAGG........................................................................................................................................................................................................1940.500.50----------------------------------------------0.25-0.25----------------
..............TCTTCAGTACGTCTTCCAGGG.......................................................................................................................................................................................................................2120.500.50-----------------------------------0.50-----------------------------
..................CAGTACGTCTTCCAGGGTCGGATCAAAGAAGG........................................................................................................................................................................................................3220.500.50-------------0.50---------------------------------------------------
........................GTCTTCCAGGGTCGGATCAAAGA...........................................................................................................................................................................................................2330.330.33------------0.33----------------------------------------------------
.......................CGTCTTCCAGGGTCGGA..................................................................................................................................................................................................................1730.330.33-------0.33---------------------------------------------------------
.......................CGTCTTCCAGGGTCGGATCAAAGAAGGG.......................................................................................................................................................................................................2830.330.33----0.33------------------------------------------------------------
..............................................................................................CACAGAGGAGATCCCCAA..........................................................................................................................................1830.330.33--------------------------------------0.33--------------------------
........................GTCTTCCAGGGTCGGATCAAAG............................................................................................................................................................................................................2230.330.33---------------------------------------0.33-------------------------
...............................AGGGTCGGATCAAAGAAGT........................................................................................................................................................................................................1940.250.25-------0.25---------------------------------------------------------
...............................AGGGTCGGATCAAAGAAG.........................................................................................................................................................................................................1840.250.25------------------------------------------------------0.25----------
................................GGGTCGGATCAAAGAAGGGTAATGTT................................................................................................................................................................................................2640.250.25-----------------------------------------------------------0.25-----
....................................CGGATCAAAGAAGGGTAATGT.................................................................................................................................................................................................2140.250.25---------------------------------------------------0.25-------------
...........................TTCCAGGGTCGGATCAA..............................................................................................................................................................................................................1740.250.25---------------------------------------------------------0.25-------
.............................................................ATACTCTTTTTTTTCTTCTCTG.......................................................................................................................................................................2240.250.25--0.25--------------------------------------------------------------
.................................GGTCGGATCAAAGAAGGGTA.....................................................................................................................................................................................................2040.250.25-----------------------------------------0.25-----------------------
.............................CCAGGGTCGGATCAAAGAAGGGTAATGTT................................................................................................................................................................................................2940.250.25-------0.25---------------------------------------------------------
..................................GTCGGATCAAAGAAGGGTAATGTT................................................................................................................................................................................................2440.250.25-----------------------------------------------------0.25-----------
.............................CCAGGGTCGGATCAAAGAAG.........................................................................................................................................................................................................2040.250.25--------------------------------------------0.25--------------------
...................................TCGGATCAAAGAAGG........................................................................................................................................................................................................1550.200.20--------------------------------------------------------------0.20--
...................................TCGGATCAAAGAAGGCAG.....................................................................................................................................................................................................1850.200.20-------------------------------------------------------------0.20---
..................................GTCGGATCAAAGAAG.........................................................................................................................................................................................................1560.170.17-------------------------------------0.17---------------------------
.........................................CAAAGAAGGGTAATGT.................................................................................................................................................................................................1660.170.17----------------------------------------------------------------0.17

Antisense strand
CCACAGTGAAGAAATCTTCAGTACGTCTTCCAGGGTCGGATCAAAGAAGGGTAATGTTGTGATACTCTTTTTTTTCTTCTCTGCCTGAGTGAGACACAGAGGAGATCCCCAATGCTCATAGGCTCAGCTTTGTAATTTCTGTCAACTTTTTGAGAACATCAGCTCAGATTTGACACTGAAATTGGGTTTGAGGGTCAGACAGTATATGAAACCAATACTCTCTTTGGTTGAAAGATATTGTGTTTTAGAG
...........................................................(((..(((.......(((((((((.((.....))...)))))))))..((((((..(((.((((...)))).........((((((...((((((........)))))).)))))).))).))))))...)))..))).....................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040035(GSM532920)
G001T. (cervix)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038857(GSM458540)
D20. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.....................................................................TTTTTTCTTCTCTGCCTCA.................................................................................................................................................................. 191.000.00-------------------------1.00---------------------------------------
............................................................................................................................................................................................TGAGGGTCAGACAGTATACC.......................................... 201.000.00--------1.00--------------------------------------------------------
..................................................................GGCAGAGAAGAAAAAAAAG..................................................................................................................................................................... 1960.170.17---------------------------------------------------------------0.17-