ID: uc010kkk.1_intron_4_0_chr6_166836906_r
GENE: RPS6KA2(1)
chr6:166836856-166837405-


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(2)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
GCGTGGCCCTGGTCCGTCTCCCCAACGAGTTGCTGCACCCAGGACAGCAGGTGCCTGATCTGTGCTGCTCACTGGTGCTGCTCCAACACCTCACAGTGCATGGGGGTGGGCACACAGGGAGTAGTTATTGAATGAATATCATCTTTAAAATGCTTTTCATTCCTATCTCCAGAGCTCACCACATTTCCTTTTATGTGACAGCTCCAGTAAGCTGCGGCCTCAACTTGGAGAGGTGCTCACTTATTTACTCAAATATTCATTCACTGTAAAAGCAGGTGACACCAGGAGCTCAGAAGTGAGTGACCACCACAGGAGAATGGGAGAAGGTGGGGGGCCCTCTGGAGAAGACAGCAGCTGTTGACACTGTTGGCCTGTTGCCTGCTTGCAGGACCTGCTAGGAAGACAGTTCCCAAATGCACCCTCCCCTCCAAATGCACCTGCCCTCCCTCTCCTGCTCAGTCCTCAGCCCCCAAGTAGGCACTGTGCCTTCTGTCTTGCAGGTTGTTCATCGAGACCTGAAGCCGAGTAACATCCTGTACAGGGATGAGTC
..........................................................((...(((((((.(((((((((((((..(((......)))....))))))).))).))).)))))))....))...................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029125(GSM416754)
U2OS. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029126(GSM416755)
143B. (cell line)		SRR189784SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029130(GSM416759)
DLD2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................................................GCTTTTCATTCCTATGTTA............................................................................................................................................................................................................................................................................................................................................................................................1931.000.0015.007.00-3.00-2.00-1.00--1.001.00---------------------1.00--
.......................................................................................................................................................GCTTTTCATTCCTATTTGA............................................................................................................................................................................................................................................................................................................................................................................................1925.000.0012.008.00-1.00-1.00-2.00--1.00-------------------------
.......................................................................................................................................................GCTTTTCATTCCTATGTGC............................................................................................................................................................................................................................................................................................................................................................................................196.000.004.001.00-------------------------1.00--------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGACCTGAAGCCGAGTAAC....................2314.004.00--------3.00---1.00-----------------------
.......................................................................................................................................................GCTTTTCATTCCTATGCGA............................................................................................................................................................................................................................................................................................................................................................................................194.000.001.002.00---------1.00------------------------
.......................................................................................................................................................GCTTTTCATTCCTATGTGT............................................................................................................................................................................................................................................................................................................................................................................................193.000.00-2.00----------------1.00-----------------
...........................................................................................................................................................................................................................................................................................................................................................ACAGCAGCTGTTGACTGGG........................................................................................................................................................................................192.000.00------2.00-----------------------------
.................................................................................................................................................................................ACCACATTTCCTTTTATATG.................................................................................................................................................................................................................................................................................................................................................................201.000.00----1.00-------------------------------
.......................................................................................................................................................GCTTTTCATTCCTATTTG.............................................................................................................................................................................................................................................................................................................................................................................................181.000.00-1.00----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACCTGAAGCCGAGTCA.....................201.000.00-------------------------------1.00----
........CTGGTCCGTCTCCCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................161.000.00----1.00-------------------------------
.....................................................CCTGATCTGTGCTGCTCACTGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------------1.00-----------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGACCTGAAGCCGAG........................1911.001.00--------------1.00---------------------
.........................................................................................................................................................TTTTCATTCCTATCTCG............................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------1.00----------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTACAGGGATGACT.181.000.00----1.00-------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCGAGACCTGAAGCCGAGTAACATCCTG..............3211.001.00---------1.00--------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCCTGTACAGGGATGAGT.2111.001.00-----------------------------1.00------
..........................................................................................................................................................................................................................................................................................................AGTGACCACCACAGGAGAATGGGAGAAGGTG.............................................................................................................................................................................................................................3111.001.00---------1.00--------------------------
......................................................................................................................................................TGCTTTTCATTCCTATGTGA............................................................................................................................................................................................................................................................................................................................................................................................201.000.00-------------------------1.00----------
.......................................................................................................................................................GCTTTTCATTCCTATATGA............................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00-----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTTCTGTCTTGCCCGC................................................191.000.00---------------1.00--------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCGAGACCTGAAGCCGAGTAACA...................2711.001.00----------------------------1.00-------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGCCGAGTAACATCCT...............2011.001.00---------------------1.00--------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAAGCCGAGTAACATCCTGT.............2311.001.00------------------------------1.00-----
.............................................................................................................................................................................................................................................................................................................................................................................GTTGGCCTGTTGCCTCTGT......................................................................................................................................................................191.000.00-------------------1.00----------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTTCATCGAGACCTGAA..............................2120.500.50--------------0.50---------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGACCTGAAGCC...........................1520.500.50-------------0.50----------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCATCGAGACCTGAA..............................2020.500.50------------0.50-----------------------
................................................................................................................................................................................CACCACATTTCCTTTT......................................................................................................................................................................................................................................................................................................................................................................1690.110.11-----------------------------------0.11

Antisense strand
GCGTGGCCCTGGTCCGTCTCCCCAACGAGTTGCTGCACCCAGGACAGCAGGTGCCTGATCTGTGCTGCTCACTGGTGCTGCTCCAACACCTCACAGTGCATGGGGGTGGGCACACAGGGAGTAGTTATTGAATGAATATCATCTTTAAAATGCTTTTCATTCCTATCTCCAGAGCTCACCACATTTCCTTTTATGTGACAGCTCCAGTAAGCTGCGGCCTCAACTTGGAGAGGTGCTCACTTATTTACTCAAATATTCATTCACTGTAAAAGCAGGTGACACCAGGAGCTCAGAAGTGAGTGACCACCACAGGAGAATGGGAGAAGGTGGGGGGCCCTCTGGAGAAGACAGCAGCTGTTGACACTGTTGGCCTGTTGCCTGCTTGCAGGACCTGCTAGGAAGACAGTTCCCAAATGCACCCTCCCCTCCAAATGCACCTGCCCTCCCTCTCCTGCTCAGTCCTCAGCCCCCAAGTAGGCACTGTGCCTTCTGTCTTGCAGGTTGTTCATCGAGACCTGAAGCCGAGTAACATCCTGTACAGGGATGAGTC
..........................................................((...(((((((.(((((((((((((..(((......)))....))))))).))).))).)))))))....))...................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150..............................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029125(GSM416754)
U2OS. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029126(GSM416755)
143B. (cell line)		SRR189784SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029130(GSM416759)
DLD2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAACCTGCAAGACAGAAGGCACA.......................................... 2713.003.00--3.00---------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAACCTGCAAGACAGAAGGCACAGT.......................................... 2912.002.00--2.00---------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGAACAACCTGCAAGACAGAAGGC...................................... 2811.001.00--1.00---------------------------------
....GGCCCTGGTCCGTCTGGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------1.00-------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGAGGGAGGGC................................................................................................ 1501.001.00-----------------1.00------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGCTCAGTCCTGGG.................................................................................... 181.000.00--------------------------------1.00---
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGAAGCCGAGTACCTC.................. 201.000.00--------------------------1.00---------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTGCCCTCCCTCTCTGG................................................................................................ 211.000.00------1.00-----------------------------
...........GTCCGTCTCCCCAACGGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00----------------------1.00-------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACAACCTGCAAGACAGAAGGCAC.......................................... 2611.001.00--1.00---------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................CACTGTTGGCCTGTTGCAAC......................................................................................................................................................................... 201.000.00-----------------------1.00------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGCAGGAGAGGGAGG.......................................................................................... 1911.001.00--------------------1.00---------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGTTGTTCATCTCGC.................................... 191.000.00----------------------------------1.00-