ID: uc010khc.2_intron_3_0_chr6_142691931_f.5p
GENE: (4)
chr6:142691881-142692130+


(1)
BREAST
(8)
CELL-LINE
(1)
CERVIX
(3)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
CTGGAATATCCCAAACCTAGCTCTGAAAGCTGAAAGCAACCTAAGCTGTGGTGAGTTTGTAGCGTATTCCTTTTTTTTTTTTTTTTTAGCATTATTCTATGAATATGATTGTCAACAAAGAATTATACATACACACAAATGTACCTGTATGTATATTCACACATATAGACATATATATATATGTTGTCATTAAAAAGCTCTTTTAATTTTTAAAATGTCGTCTGCTCAGCTCTTATAGCACACATTTGAT
...............................................................((((...........((((((.((..((.(((((...)))))....))..)).))))))..))))..........................................................................................................................
............................................................61..........................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577743(Rovira)
total RNA. (breast)
................................................................TATTCCTTTTTTTTTTTTTTTTTAAATG..............................................................................................................................................................282369.000.00896.00553.00678.00139.0098.004.001.00-----------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATTG..............................................................................................................................................................27407.000.00224.00133.008.0025.0017.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAAGG..............................................................................................................................................................27247.000.00126.0085.007.0012.0017.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAATTG..............................................................................................................................................................28196.000.0095.0056.0027.009.009.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAAAG..............................................................................................................................................................27147.000.0060.0055.0011.009.0011.001.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAAAT..............................................................................................................................................................27119.000.0059.0035.004.0011.0010.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAAGG..............................................................................................................................................................28112.000.0040.0032.0027.009.003.00-1.00-----------
................................................................TATTCCTTTTTTTTTTTTTTTTTAATTT..............................................................................................................................................................2892.000.0049.0034.004.003.002.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATG...............................................................................................................................................................2690.000.0040.0029.005.006.0010.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAAAG..............................................................................................................................................................2881.000.0024.0015.0030.007.004.001.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAATA..............................................................................................................................................................2767.000.0032.0022.001.006.006.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTT...............................................................................................................................................................2648.000.0022.0021.001.002.002.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAATG...............................................................................................................................................................2747.000.0019.0016.006.003.003.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTTT..............................................................................................................................................................2741.000.0018.0020.00-1.002.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAATT...............................................................................................................................................................2739.000.0011.0021.003.003.001.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAATA..............................................................................................................................................................2833.000.0010.0016.002.004.001.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAACG..............................................................................................................................................................2728.000.003.002.006.0011.006.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAACG..............................................................................................................................................................2828.000.001.003.0018.003.002.001.00------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAAAT..............................................................................................................................................................2827.000.008.0011.004.002.002.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAACTG..............................................................................................................................................................2725.000.007.009.001.003.005.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTTG..............................................................................................................................................................2721.000.0012.009.00----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATATG..............................................................................................................................................................2721.000.007.008.001.004.001.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATT................................................................................................................................................................2521.000.0013.008.00----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATTTG..............................................................................................................................................................2820.000.008.006.006.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTG...............................................................................................................................................................2620.000.0013.004.00-2.001.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAAG...............................................................................................................................................................2719.000.003.007.007.002.00--------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATTT...............................................................................................................................................................2717.000.0010.004.003.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATGG..............................................................................................................................................................2715.000.006.004.003.002.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAGGG..............................................................................................................................................................2711.000.008.00-1.001.001.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAACTG..............................................................................................................................................................2811.000.004.001.003.003.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAGTG..............................................................................................................................................................2711.000.004.001.005.00-1.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAAGT..............................................................................................................................................................2711.000.007.002.00-2.00--------------
..................................................................TTCCTTTTTTTTTTTTTTTTTACTG...............................................................................................................................................................2511.000.005.005.00-1.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATATT..............................................................................................................................................................2711.000.009.002.00----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATGT..............................................................................................................................................................2710.000.005.005.00----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATTG...............................................................................................................................................................2710.000.004.005.001.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATTTT..............................................................................................................................................................289.000.002.004.003.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAGTG..............................................................................................................................................................288.000.002.002.004.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTACATG..............................................................................................................................................................277.000.001.002.001.00-3.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAATC..............................................................................................................................................................287.000.00-2.003.002.00--------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAAGT..............................................................................................................................................................286.000.003.002.001.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAATGG..............................................................................................................................................................286.000.004.001.001.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTCTTT...............................................................................................................................................................275.000.00--3.001.00--1.00-----------
................................................................TATTCCTTTTTTTTTTTTTTTTTATATT..............................................................................................................................................................285.000.001.002.002.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAACT..............................................................................................................................................................285.000.001.001.002.00-1.00-------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATATG..............................................................................................................................................................285.000.003.001.001.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATAT..............................................................................................................................................................275.000.002.001.00--2.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATAT...............................................................................................................................................................265.000.003.00--1.001.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAACT..............................................................................................................................................................274.000.001.002.001.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATTC..............................................................................................................................................................274.000.001.002.001.00---------------
................................................................TATTCCTTTTTTTTTAATG.......................................................................................................................................................................194.000.004.00-----------------
...................................................................TCCTTTTTTTTTTTTTTTTTATTTA..............................................................................................................................................................254.000.003.001.00----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATTA..............................................................................................................................................................274.000.002.001.001.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAAGGG..............................................................................................................................................................283.000.00-1.001.00-1.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATAA...............................................................................................................................................................263.000.001.00-1.00-1.00-------------
..................................................................TTCCTTTTTTTTTTTTTTTTTATATG..............................................................................................................................................................263.000.001.00--1.001.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCAAG...............................................................................................................................................................263.000.00-1.00-1.001.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATA................................................................................................................................................................253.000.001.001.00--1.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAACGG..............................................................................................................................................................273.000.001.002.00----------------
...................................................................TCCTTTTTTTTTTTTTTTTTATTGG..............................................................................................................................................................253.000.00-2.00--1.00-------------
...................................................................................................................CAAAGAATTATACATTTG.....................................................................................................................183.000.00--------3.00---------
.................................................................ATTCCTTTTTTTTTTTTTTTTTACAGG..............................................................................................................................................................273.000.002.00--1.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCG.................................................................................................................................................................242.000.00----2.00-------------
...................................................................TCCTTTTTTTTTTTTTTTTTATATG..............................................................................................................................................................252.000.00-1.00--1.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTA...............................................................................................................................................................262.000.002.00-----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAACTT..............................................................................................................................................................282.000.002.00-----------------
...................................................................TCCTTTTTTTTTTTTTTTTTATAT...............................................................................................................................................................242.000.00-1.001.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATT................................................................................................................................................................262.000.001.001.00----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAGATG..............................................................................................................................................................272.000.002.00-----------------
.............AACCTAGCTCTGAAAGCTGAAAGCA....................................................................................................................................................................................................................2512.002.00-------1.00-1.00--------
...........CAAACCTAGCTCTGAAAGCTGAAAGCAA...................................................................................................................................................................................................................2812.002.00----------2.00-------
..GGAATATCCCAAACCTAG......................................................................................................................................................................................................................................1812.002.00---------2.00--------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAACTT..............................................................................................................................................................272.000.001.001.00----------------
................................................................TATTCCTTTTTTTTTTTTTTTTCTTA................................................................................................................................................................262.000.00-1.00-1.00--------------
.............AACCTAGCTCTGAAAGCTGAAAGC.....................................................................................................................................................................................................................2412.002.00-------2.00----------
.................................................................ATTCCTTTTTTTTTTTTTTTTTACTTG..............................................................................................................................................................272.000.001.00--1.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATAAG..............................................................................................................................................................272.000.00-1.00--1.00-------------
............AAACCTAGCTCTGAAAGCTGAAAGCA....................................................................................................................................................................................................................2612.002.00-------2.00----------
................................................................TATTCCTTTTTTTTTTTTTTTTTAATTC..............................................................................................................................................................282.000.00--2.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAACG...............................................................................................................................................................262.000.00-1.00-1.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAAAC..............................................................................................................................................................272.000.001.001.00----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCAAT...............................................................................................................................................................262.000.001.00----1.00------------
.............AACCTAGCTCTGAAAGCTGAAAGCAA...................................................................................................................................................................................................................2612.002.00-------1.00-1.00--------
.............................................................................TTTTTTTTTTAGCATTCCCG.........................................................................................................................................................201.000.00----1.00-------------
..GGAATATCCCAAACCTAGC.....................................................................................................................................................................................................................................1911.001.00---------1.00--------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATAAA..............................................................................................................................................................271.000.00---1.00--------------
................CTAGCTCTGAAAGCTGAAAA......................................................................................................................................................................................................................201.000.00----------------1.00-
.................................................................ATTCCTTTTTTTTTTTTTTTTCTA.................................................................................................................................................................241.000.00---1.00--------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATA................................................................................................................................................................261.000.00-1.00----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAACT...............................................................................................................................................................271.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTACATT..............................................................................................................................................................271.000.001.00-----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTACTG...............................................................................................................................................................271.000.001.00-----------------
...................................................................TCCTTTTTTTTTTTTTTTTTATCAA..............................................................................................................................................................251.000.00-1.00----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATTCG..............................................................................................................................................................281.000.00--1.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTCTCT...............................................................................................................................................................271.000.001.00-----------------
..................................................................TTCCTTTTTTTTTTTTTTTTTAGATT..............................................................................................................................................................261.000.00-1.00----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATTA...............................................................................................................................................................271.000.001.00-----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAACCG..............................................................................................................................................................271.000.00---1.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTCTAG................................................................................................................................................................251.000.00---1.00--------------
................................................................TATTCCTTTTTTTTTTTTTTTTTACCTG..............................................................................................................................................................281.000.00-1.00----------------
..................................................................TTCCTTTTTTTTTTTTTTTTTAGGTGG.............................................................................................................................................................271.000.00------1.00-----------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTGG..............................................................................................................................................................271.000.00-1.00----------------
..................................................................TTCCTTTTTTTTTTTTTTTTTACCG...............................................................................................................................................................251.000.00---1.00--------------
................................................................TATTCCTTTTTTTTTTTTTTTTTGAA................................................................................................................................................................261.000.00--1.00---------------
...................................................................TCCTTTTTTTTTTTTTTTTTAGCCAGG............................................................................................................................................................271.000.00------1.00-----------
..................................................................TTCCTTTTTTTTTTTTTTTTTATCAG..............................................................................................................................................................261.000.001.00-----------------
................................................................TATTCCTTTTTTTTTTTCAT......................................................................................................................................................................201.000.00--1.00---------------
...................................................................TCCTTTTTTTTTTTTTTTTTAGAAGG.............................................................................................................................................................261.000.00-----1.00------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAATAT..............................................................................................................................................................281.000.00----1.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCGCC...............................................................................................................................................................261.000.00-----1.00------------
....................................CAACCTAAGCTGTGGTT.....................................................................................................................................................................................................171.000.00-------------1.00----
................................................................TATTCCTTTTTTTTTTTTTTTTTATTAG..............................................................................................................................................................281.000.00--1.00---------------
.............AACCTAGCTCTGAAAGCTGAAAGCAAC..................................................................................................................................................................................................................2711.001.00-----------1.00------
...................................................................TCCTTTTTTTTTTTTTTTTTATCC...............................................................................................................................................................241.000.00------1.00-----------
................................................................TATTCCTTTTTTTTTTTTTTTTCATG................................................................................................................................................................261.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTCCCG................................................................................................................................................................251.000.00-----1.00------------
................................................................TATTCCTTTTTTTTTTTTTTTTCTTC................................................................................................................................................................261.000.00------1.00-----------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCTCG...............................................................................................................................................................261.000.00----1.00-------------
................................................................................................CTATGAATATGATTGTCAACA.....................................................................................................................................2111.001.00-------1.00----------
................................................................TATTCCTTTTTTTTTTTTTTTTTCATG...............................................................................................................................................................271.000.00----1.00-------------
...........................................................TAGCGTATTCCTTTTTTTTTTTAGC......................................................................................................................................................................251.000.00-----1.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAGTTG..............................................................................................................................................................271.000.001.00-----------------
................................................................TATTCCTTTTTTTTTTTTTTTTCAA.................................................................................................................................................................251.000.001.00-----------------
....................................................................CCTTTTTTTTTTTTTTTTTAGCCCC.............................................................................................................................................................251.000.00----1.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATGC...............................................................................................................................................................261.000.00-----1.00------------
..................................................................TTCCTTTTTTTTTTTTTTTTTATGAG..............................................................................................................................................................261.000.00-----1.00------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATAAT..............................................................................................................................................................281.000.00--1.00---------------
.....................................................................CTTTTTTTTTTTTTTTTTAGCGTTT............................................................................................................................................................251.000.00------1.00-----------
................................................................TATTCCTTTTTTTTTTTTTTGGG...................................................................................................................................................................231.000.00-----1.00------------
...GAATATCCCAAACCTAGC.....................................................................................................................................................................................................................................1811.001.00---------1.00--------
................................................................TATTCCTTTTTTTTTTTTTTTTTACATG..............................................................................................................................................................281.000.001.00-----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAATCT..............................................................................................................................................................271.000.00--1.00---------------
....................................................................CCTTTTTTTTTTTTTTTTTAGTCTG.............................................................................................................................................................251.000.00-1.00----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCCCT...............................................................................................................................................................261.000.00------1.00-----------
..................AGCTCTGAAAGCTGAAAGC.....................................................................................................................................................................................................................1911.001.00---------------1.00--
..................................................................TTCCTTTTTTTTTTTTTTTTTATGGG..............................................................................................................................................................261.000.001.00-----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCAGG...............................................................................................................................................................261.000.00-----1.00------------
.................TAGCTCTGAAAGCTGAAAGCAAC..................................................................................................................................................................................................................2311.001.00-------1.00----------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTGT..............................................................................................................................................................271.000.00-1.00----------------
................................................................TATTCCTTTTTTTTTTTTTTTTCAAT................................................................................................................................................................261.000.001.00-----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCTGG...............................................................................................................................................................261.000.00-----1.00------------
................................................................TATTCCTTTTTTTTTTTTTTTTTATC................................................................................................................................................................261.000.00-----1.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCTAA...............................................................................................................................................................261.000.00-----1.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTCCGG................................................................................................................................................................251.000.00-----1.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTACGGG..............................................................................................................................................................271.000.00-----1.00------------
..................................................................TTCCTTTTTTTTTTTTTTTTTATATT..............................................................................................................................................................261.000.00-1.00----------------
...................................................................TCCTTTTTTTTTTTTTTTTTATCTA..............................................................................................................................................................251.000.00-1.00----------------
.............................................................GCGTATTCCTTTTTTTG............................................................................................................................................................................171.000.00--------1.00---------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATAG...............................................................................................................................................................261.000.001.00-----------------
...................................................................................................................CAAAGAATTATACATGTG.....................................................................................................................181.000.00--------1.00---------
............AAACCTAGCTCTGAAAGCTGAAA.......................................................................................................................................................................................................................2311.001.00---------1.00--------
...................................................................TCCTTTTTTTTTTTTTTTTTATCTG..............................................................................................................................................................251.000.00-1.00----------------
..................................................................TTCCTTTTTTTTTTTTTTTTTACTTG..............................................................................................................................................................261.000.00---1.00--------------
................................................................TATTCCTTTTTTTTTTTTTTTTTACAAT..............................................................................................................................................................281.000.00----1.00-------------
.............................................................................................................TGTCAACAAAGAATTATACATACACAC..................................................................................................................2711.001.00---------1.00--------
.................................................................ATTCCTTTTTTTTTTTTTTTTCACT................................................................................................................................................................251.000.00----1.00-------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATAGG..............................................................................................................................................................271.000.001.00-----------------
...................................................................TCCTTTTTTTTTTTTTTTTTAGCAGTTT...........................................................................................................................................................281.000.00------1.00-----------
................................................................TATTCCTTTTTTTTTTTTTTTTTCCA................................................................................................................................................................261.000.00-1.00----------------
...............................................................GTATTCCTTTTTTTTTTTTTTCTA...................................................................................................................................................................241.000.00-----1.00------------
............AAACCTAGCTCTGAAAGCTGAAAGTGGC..................................................................................................................................................................................................................281.000.00-------1.00----------
................................................................TATTCCTTTTTTTTTTTTTTTTTATTAT..............................................................................................................................................................281.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATCTG..............................................................................................................................................................271.000.001.00-----------------
................................................................TATTCCTTTTTTTTTTTTTTTTCTC.................................................................................................................................................................251.000.00-----1.00------------
................................................................TATTCCTTTTTTTTTTTTTCGCT...................................................................................................................................................................231.000.00--1.00---------------
................................................................TATTCCTTTTTTTTTTTTTTTTCTA.................................................................................................................................................................251.000.00--1.00---------------
....................................................................CCTTTTTTTTTTTTTTTTTAGCACG.............................................................................................................................................................251.000.00------1.00-----------
................................................................TATTCCTTTTTTTTTTTTTTTTTACTTG..............................................................................................................................................................281.000.001.00-----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCTCC...............................................................................................................................................................261.000.00-----1.00------------
...................................................................TCCTTTTTTTTTTTTTTTTTATGT...............................................................................................................................................................241.000.00------1.00-----------
................................................................TATTCCTTTTTTTTTTTTTTTTTGACT...............................................................................................................................................................271.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTCAAG................................................................................................................................................................251.000.00----1.00-------------
..........................................AAGCTGTGGTGAGTTTGGAT............................................................................................................................................................................................201.000.00-----------------1.00
.....................TCTGAAAGCTGAAAGCAACCTAAGCTGTGG.......................................................................................................................................................................................................3011.001.00--------------1.00---
................................................................TATTCCTTTTTTTTTTTTTTTTTAACGG..............................................................................................................................................................281.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCTC................................................................................................................................................................251.000.00-----1.00------------
................................................................TATTCCTTTTTTTTTTTTTTTTTACAAG..............................................................................................................................................................281.000.00-1.00----------------
..................................................................TTCCTTTTTTTTTTTTTTTTTACAAG..............................................................................................................................................................261.000.001.00-----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAAGT...............................................................................................................................................................261.000.001.00-----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAGTGG..............................................................................................................................................................271.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTCGGG................................................................................................................................................................251.000.00-----1.00------------
..................................................................TTCCTTTTTTTTTTTTTTTTTATAAG..............................................................................................................................................................261.000.001.00-----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTGAAA...............................................................................................................................................................271.000.00--1.00---------------
...........CAAACCTAGCTCTGAAAGCTG..........................................................................................................................................................................................................................2111.001.00-------1.00----------
................................................................TATTCCTTTTTTTTTTTTTTTTTATGAG..............................................................................................................................................................281.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAACT...............................................................................................................................................................261.000.001.00-----------------
...................................................................TCCTTTTTTTTTTTTTTTTTAGTGG..............................................................................................................................................................251.000.00-1.00----------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCTAG...............................................................................................................................................................261.000.00----1.00-------------
..................................................................TTCCTTTTTTTTTTTTTTTTTACATG..............................................................................................................................................................261.000.00-1.00----------------
...................................................................TCCTTTTTTTTTTTTTTTTTATCG...............................................................................................................................................................241.000.001.00-----------------
..................................................................TTCCTTTTTTTTTTTTTTTTTAGAGCC.............................................................................................................................................................271.000.00-----1.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTCAGC...............................................................................................................................................................261.000.00--1.00---------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTACAAT..............................................................................................................................................................271.000.00---1.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTAACCT..............................................................................................................................................................271.000.00---1.00--------------
...............................................................GTATTCCTTTTTTTTTTTTTTTTTGGG................................................................................................................................................................271.000.00-----1.00------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTACAG...............................................................................................................................................................261.000.001.00-----------------
.........CCCAAACCTAGCTCTGAAAGCTGAAAGCA....................................................................................................................................................................................................................2911.001.00-------1.00----------
................................................................TATTCCTTTTTTTTTTTTTTTTTAG.................................................................................................................................................................2521.001.00---1.00--------------
.................................................................ATTCCTTTTTTTTTTTTTTTTTATTCT..............................................................................................................................................................271.000.001.00-----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTGTT................................................................................................................................................................261.000.00-----1.00------------
...................................................................TCCTTTTTTTTTTTTTTTTTATTAA..............................................................................................................................................................251.000.00---1.00--------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAGG................................................................................................................................................................2620.501.000.50-----------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAGATG..............................................................................................................................................................2820.501.00--0.50---------------
................................................................TATTCCTTTTTTTTTTTTTTTTTAGTTG..............................................................................................................................................................2820.501.00-0.50----------------
..................................................................................................................................................................ATATAGACATATATATATATG...................................................................2140.250.25--------0.25---------
..................................................................TTCCTTTTTTTTTTTTTTTTTAGC................................................................................................................................................................2470.140.14-----0.14------------
..............................................................CGTATTCCTTTTTTTTTTTT........................................................................................................................................................................2070.140.14-----0.14------------

Antisense strand
CTGGAATATCCCAAACCTAGCTCTGAAAGCTGAAAGCAACCTAAGCTGTGGTGAGTTTGTAGCGTATTCCTTTTTTTTTTTTTTTTTAGCATTATTCTATGAATATGATTGTCAACAAAGAATTATACATACACACAAATGTACCTGTATGTATATTCACACATATAGACATATATATATATGTTGTCATTAAAAAGCTCTTTTAATTTTTAAAATGTCGTCTGCTCAGCTCTTATAGCACACATTTGAT
...............................................................((((...........((((((.((..((.(((((...)))))....))..)).))))))..))))..........................................................................................................................
............................................................61..........................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577743(Rovira)
total RNA. (breast)
..........................................................................TTTTTTTTTTTTTAGCATTAT........................................................................................................................................................... 211.000.00------------1.00-----
.......................................................................................................................................................................GACATATATATATATGCG................................................................. 181.000.00--------1.00---------
...................................................................................................................................................................TATAGACATATATATACG..................................................................... 181.000.00--------1.00---------
..............................................................................................................................................................................ATATATATGTTGTCATTTT......................................................... 191.000.00--------1.00---------