ID: uc010kcy.1_intron_9_0_chr6_105225193_r.5p
GENE: HACE1(16)
chr6:105228028-105228277-


(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(10)
BREAST
(10)
CELL-LINE
(7)
CERVIX
(2)
FIBROBLAST
(5)
HEART
(3)
LIVER
(1)
OTHER
(9)
SKIN
(3)
UTERUS

Sense strand
AGGAGCCTCTATAATCAGTCCTGTTTTGTGAATTATTTATGGAAATGCAGGTACTCTAGAAAGTTTACATACAAAAATGTACCATTTGGCTGTGTAGGTGTTTGTATGTGTGTGTGTGTGTTTGATCTGAGCTTTTGAAGGTAGCAGTTTGTACCTTTTAATGTTCCACTTGAATTACTTGAAAAGGTTCCATTTGTTTTTATTTCTTGGTTCACATTTCATAGATAAATGATATAGTTTAATATCTTAT
...................................................................((((((...((((((((((((......))))))...))))))...)))))).((((.....))))....((((((.((.....))))))))............................................................................................
...................................................................68............................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189782SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040024(GSM532909)
G613N. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR040016(GSM532901)
G645N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532879(GSM532879)
G659N. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................GAAGGTAGCAGTTTGTACAGTT............................................................................................2258.000.0056.00---1.00---1.00--------------------------------------------------
...........................................................................................................................................GGTAGCAGTTTGTACAGTT............................................................................................1927.000.004.0017.00-3.00------2.00---------------------1.00--------------------------
..........................................................................................................................................AGGTAGCAGTTTGTACAGTT............................................................................................2021.000.003.009.00--1.00-3.00----1.002.00-------------------------------1.001.00-------------
........................................................................................................................................GAAGGTAGCAGTTTGTACAGTC............................................................................................226.000.006.00----------------------------------------------------------
...........................................................................................................................................GGTAGCAGTTTGTACAG..............................................................................................175.000.00--4.00---------------------------------1.00----------------------
........................................................................................................................................GAAGGTAGCAGTTTGTACAGCT............................................................................................224.000.004.00----------------------------------------------------------
...........................................................................................................................................GGTAGCAGTTTGTACAGT.............................................................................................183.000.001.00--------------------------------------1.00---------------1.00---
.........................................................................................................................................AAGGTAGCAGTTTGTACAGTT............................................................................................212.000.00---------------------------------1.00--------1.00----------------
........................................................................................................................................GAAGGTAGCAGTTTGTACAGT.............................................................................................212.000.001.00---------------------------------------------------1.00------
........................................................................................................................................GAAGGTAGCAGTTTGTACCGTT............................................................................................222.000.002.00----------------------------------------------------------
..........................................................................................................................................AGGTAGCAGTTTGTACAGCT............................................................................................201.000.00-------------------------------1.00---------------------------
........................................................................................................................................GAAGGTAGCAGTTTGTACAGGT............................................................................................221.000.001.00----------------------------------------------------------
........................................................................................................................................GAAGGTAGCAGTTTGTACAGAT............................................................................................221.000.001.00----------------------------------------------------------
..........................................................................................................................................AGGTAGCAGTTTGTACGATT............................................................................................201.000.00----1.00------------------------------------------------------
................................................................................................................................................CAGTTTGTACCTTTTAATGTTCCACTT...............................................................................2711.001.00-------------1.00---------------------------------------------
........................................................................AAAAATGTACCATTTCTGT...............................................................................................................................................................191.000.00-------------------------------------1.00---------------------
....................................................................................................................TGTGTTTGATCTGAGCTTTTGAAGGTAGC.........................................................................................................2911.001.00----------------------------------------1.00------------------
........................................................................................................................................GAAGGTAGCAGTTTGTCCTG..............................................................................................201.000.00--------1.00--------------------------------------------------
..........................................................................................................................................AGGTAGCAGTTTGTACAGGT............................................................................................201.000.00-1.00---------------------------------------------------------
............AATCAGTCCTGTTTTGTGAA..........................................................................................................................................................................................................................2011.001.00-----------------------------------------------------1.00-----
..........................................................................................................................................AGGTAGCAGTTTGTACGGTT............................................................................................201.000.001.00----------------------------------------------------------
...................................................................................ATTTGGCTGTGTAGGTGTT....................................................................................................................................................1911.001.00------------------------------------------------1.00----------
....................................................................................TTTGGCTGTGTAGGTGTTTGTATGTGTG..........................................................................................................................................2811.001.00---------------------------1.00-------------------------------
......................................ATGGAAATGCAGGTACTCTAGAAAGTTTG.......................................................................................................................................................................................291.000.00-----------------------------------------1.00-----------------
.............................................................................................................................................................................................CCATTTGTTTTTATTGG............................................171.000.00---------------------------------------------------1.00-------
.....................................................................................................................................TTTGAAGGTAGCAGTTTTT..................................................................................................191.000.00---1.00-------------------------------------------------------
..........................................................................................................................................AGGTAGCAGTTTGTACCGTT............................................................................................201.000.00----1.00------------------------------------------------------
........................................................................................................................................GAAGGTAGCAGTTTGTACAGCC............................................................................................221.000.001.00----------------------------------------------------------
..........................................................................................................................................AGGTAGCAGTTTGTACAGT.............................................................................................191.000.00-------------------------1.00---------------------------------
............................................................................................................................................GTAGCAGTTTGTACCGTT............................................................................................181.000.00-----------1.00-----------------------------------------------
........................................................................................................................................GAAGGTAGCAGTTTGTACACT.............................................................................................211.000.00---------1.00-------------------------------------------------
.......................................TGGAAATGCAGGTACTCTAGAAAGTTTACA.....................................................................................................................................................................................3011.001.00-------------------1.00---------------------------------------
...........................................................................................................................................GGTAGCAGTTTGTACAGTC............................................................................................191.000.00-1.00---------------------------------------------------------
.......................................TGGAAATGCAGGTACTCTAGAA.............................................................................................................................................................................................2211.001.00--------------1.00--------------------------------------------
...................................................................................................................GTGTGTTTGATCTGAGC......................................................................................................................1730.670.67--------------0.67--------------------------------------------
..........................................................................................................................................................................TGAATTACTTGAAAAGG...............................................................1730.330.33--------------------------------------------------------0.33--
...................................................................................................................GTGTGTTTGATCTGAGCATGT..................................................................................................................2130.330.67--0.33--------------------------------------------------------
.......................................................................................................................GTTTGATCTGAGCTTT...................................................................................................................1630.330.33---------------0.33-------------------------------------------
............................................................................................TGTAGGTGTTTGTATGT.............................................................................................................................................1730.330.33---------------------------------------------------------0.33-
................................................AGGTACTCTAGAAAG...........................................................................................................................................................................................1560.170.17----------------------------------------------------------0.17

Antisense strand
AGGAGCCTCTATAATCAGTCCTGTTTTGTGAATTATTTATGGAAATGCAGGTACTCTAGAAAGTTTACATACAAAAATGTACCATTTGGCTGTGTAGGTGTTTGTATGTGTGTGTGTGTGTTTGATCTGAGCTTTTGAAGGTAGCAGTTTGTACCTTTTAATGTTCCACTTGAATTACTTGAAAAGGTTCCATTTGTTTTTATTTCTTGGTTCACATTTCATAGATAAATGATATAGTTTAATATCTTAT
...................................................................((((((...((((((((((((......))))))...))))))...)))))).((((.....))))....((((((.((.....))))))))............................................................................................
...................................................................68............................................................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189782SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040024(GSM532909)
G613N. (cervix)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR040016(GSM532901)
G645N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532879(GSM532879)
G659N. (cervix)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................................................................................................................CTTGAATTACTTGAAATAG............................................................... 1936.000.001.00-15.00--3.00-2.00-1.00------1.001.001.00-1.00-1.00-1.00---1.001.00----1.001.00-------1.00-----1.001.00---1.00----
........................................................................................................................................................................CTTGAATTACTTGAAATA................................................................ 184.000.00---------------1.00-----1.00--------1.00-------1.00--------------------
........................................................................................................................................................................CTTGAATTACTTGAAATAA............................................................... 193.000.00--1.00--------------------1.00----------------------1.00------------
........................................................................................................................................................................CTTGAATTACTTGAAACAG............................................................... 192.000.00--1.001.00-------------------------------------------------------
..........ATAATCAGTCCTGTTCAT.............................................................................................................................................................................................................................. 182.000.00---2.00-------------------------------------------------------
......................................................................................................TGTATGTGTGTGTGTGTGTTTTG............................................................................................................................. 231.000.00---1.00-------------------------------------------------------
......................................................................................................................................................................CACTTGAATTACTTGAAAGGG............................................................... 211.000.00-----1.00-----------------------------------------------------
.............................................................................................GTAGGTGTTTGTATGCT............................................................................................................................................ 171.000.00-------------1.00---------------------------------------------
..........................................................................................................................TGATCTGAGCTTTTGGGAT............................................................................................................. 191.000.00-----------------------------------------------1.00-----------
..........................................................................................................................................................................TGAATTACTTGAAAAGG............................................................... 171.000.00--------------------------1.00--------------------------------
......................................................................................................................................................................CACTTGAATTACTTGAAAG................................................................. 191.000.00---1.00-------------------------------------------------------