ID: uc010kcb.2_intron_5_0_chr6_90052175_r.3p
GENE: (3)
chr6:90052125-90052374-


(2)
B-CELL 		(6)
BREAST 		(10)
CELL-LINE 		(9)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(18)
SKIN

Sense strand
ATGAAAGCTAGATTAAATAGCTTTTACTTATAAATTTAATTTATCACTTATAGTCTCGAGACATCTCATGCATTAGAAACTATACTAGCAATAATATAAAGCATTTAATTTTTCTTGCTTGGTAATATTTCTAATATTCAGATAAAATGATCAAACTTTTCAATATTATTAATTCCTTGTGGATTATTGTTTTTGTTCAGGATAACCTTTTTGAATGGCACTTCACGGTTAGAGGGCCCCCAGACTCCGA
......................................................................................................................(((((((((((........(((.......)))...........))))))))))).(((....)))...................................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040022(GSM532907)
G575N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR040012(GSM532897)
G648N. (cervix)		SRR040032(GSM532917)
G603N. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................................TTGTGGATTATTGTTAAG........................................................1820.000.00-4.002.00-1.001.00-1.00-3.00------1.00----1.00---------1.00--------1.001.00--1.001.00---1.00--
................................................................................................................................................................................TTGTGGATTATTGTTAA.........................................................1715.000.00---2.001.00---1.00--1.002.00----1.00-----1.00---1.00--1.00-1.00-1.00----1.00------1.00-----
................................................................................................................................................................................TTGTGGATTATTGTTAAAA.......................................................1913.000.004.00--3.001.002.00--------1.001.00------------1.00-----------------------
................................................................................................................................................................................TTGTGGATTATTGTTAAGT.......................................................1912.000.001.002.002.00-1.00-1.001.00--1.00-----1.00-------1.00-----------------------1.00---
................................................................................................................................................................................TTGTGGATTATTGTTAAA........................................................187.000.002.00-1.00-----2.00-1.00------------------1.00----------------------
................................................................................................................................................................................TTGTGGATTATTGTTAAGA.......................................................195.000.00------1.00------2.001.00----------------------1.00--------------
................................................................................................................................................................................TTGTGGATTATTGTTAAAG.......................................................192.000.00---------------1.00----------------------1.00-------------
................................................................................................................................................................................TTGTGGATTATTGTTATG........................................................182.000.00-----1.00-------------------1.00--------------------------
......................................................................................................................................................................................................AGGATAACCTTTTTGAATGGC...............................2112.002.00------1.00---------------1.00-----------------------------
.............................................................................................................................................................................................................................TTCACGGTTAGAGGGCCCCCAG.......2211.001.00-------------------1.00--------------------------------
.............................................................................................................................................................................TCCTTGTGGATTATTGTTTTT........................................................2111.001.00------------------------------------------1.00---------
......................................................................................................................................................................................................AGGATAACCTTTTTGAATCGC...............................211.000.00-------1.00--------------------------------------------
............................................................................................................................................................................TTCCTTGTGGATTATTGTTTTTGTTC....................................................2611.001.00--------------------1.00-------------------------------
..............................................................................................................................................................................................................................TCACGGTTAGAGGGCCCCCAGACTCCGA2811.001.00-----------1.00----------------------------------------
....................................................................................................................................................................................................................GAATGGCACTTCACGGTTAGAGG...............2311.001.00---------------------------------1.00------------------
....................................................................................................................................................................................................................GAATGGCACTTCACGG......................1611.001.00-------------------------------------------1.00--------
..........................................................................................................................TAATATTTCTAATATCTTA.............................................................................................................191.000.00------------------------------------1.00---------------
..................................................................................................................................................................................................................................GGTTAGAGGGCCCCCAGACTCCGA2411.001.00--------------------------------------------------1.00-
....................CTTTTACTTATAAATTTAATTTATCACTTATAG.....................................................................................................................................................................................................3311.001.00-----------------------------------------------1.00----
............................................................................................................................................................................................................................CTTCACGGTTAGAGGGCC............1811.001.00-----------------------------------1.00----------------
......................................................................................................................................................................................................AGGATAACCTTTTTGAATGGCACTTCACGGTT....................3211.001.00--------------------------1.00-------------------------
...............................................................................................................................................................................CTTGTGGATTATTGTTAAA........................................................191.000.00------------------1.00---------------------------------
.....................................................................................................................................................................................GATTATTGTTTTTGTTGGT..................................................191.000.00---------------------------------------------------1.00
..............................................................................................................................................................................CCTTGTGGATTATTG.............................................................1540.250.25------0.25---------------------------------------------

Antisense strand
ATGAAAGCTAGATTAAATAGCTTTTACTTATAAATTTAATTTATCACTTATAGTCTCGAGACATCTCATGCATTAGAAACTATACTAGCAATAATATAAAGCATTTAATTTTTCTTGCTTGGTAATATTTCTAATATTCAGATAAAATGATCAAACTTTTCAATATTATTAATTCCTTGTGGATTATTGTTTTTGTTCAGGATAACCTTTTTGAATGGCACTTCACGGTTAGAGGGCCCCCAGACTCCGA
......................................................................................................................(((((((((((........(((.......)))...........))))))))))).(((....)))...................................................................
.....................................................................................................................118...............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040022(GSM532907)
G575N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR040012(GSM532897)
G648N. (cervix)		SRR040032(GSM532917)
G603N. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)