ID: uc010jyg.2_intron_7_0_chr6_43010723_r
GENE: (8)
chr6:43010673-43010861-


(2)
AGO2.ip 		(6)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(5)
HELA 		(2)
LIVER 		(2)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
GCATCATGAGAAACCTGACGCGCTGTTGGCGGGCCGTGGTGGAGAAGCAGGTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTCCTTCCAGGTGAACAATTTTCTGACCTCATCCTGGCGGGATGATGACTTTGTGCCACG
......................................................................(((((..(((((.((((.....))))(((((..(((.....))).))))).....)))))..)))))....................................................
.............................................................62...........................................................................139................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040008(GSM532893)
G727N. (cervix)
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTCCTT......................................................8518.008.007.00----------1.00-------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTTTTT......................................................858.000.008.00------------------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTCCTTC.....................................................8615.005.004.001.00-----------------------------------
..................................................................CTGCGGGAGAGAGGGGACA........................................................................................................1915.005.00---1.00-1.00---2.00----1.00----------------------
.....................................................................................................................TGCTCCTGCCCCTTCCTTCCA...................................................2115.005.00----5.00--------------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTC.........................................................8214.004.004.00------------------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGC.....................................................................7014.004.00-4.00-----------------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTG.........................................................823.000.00------3.00------------------------------
..............................................................AGGCCTGCGGGAGAGAGGGGACA........................................................................................................2313.003.00-----3.00-------------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTTTT.......................................................843.000.00-3.00-----------------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTTT........................................................832.000.002.00------------------------------------
..............................................................................................TGGCATGTTGGGTTGTGTC............................................................................1912.002.00---------------1.00------1.00--------------
.....................................................................................................................TGCTCCTGCCCCTTCCTTCC....................................................2011.001.00-------1.00-----------------------------
.............CCTGACGCGCTGTTGGCGGGCCGTGG......................................................................................................................................................2611.001.00--------------------------1.00----------
.....................................................................................................................TGCTCCTGCCCCTTCCTTCCAGA.................................................2311.001.00-------------------1.00-----------------
...........................................................................................TGGTGGCATGTTGGGTTGT...............................................................................1911.001.00------------------------------1.00------
..................................................................CTGCGGGAGAGAGGGGATA........................................................................................................191.000.00---1.00---------------------------------
...........................................................................................TGGTGGCATGTTGGGTTGTG..............................................................................2011.001.00---1.00---------------------------------
..............................GGGCCGTGGTGGAGAAGGCT...........................................................................................................................................201.000.00-------------1.00-----------------------
...................................................................TGCGGGAGAGAGGGGACA........................................................................................................1811.001.00---1.00---------------------------------
...................................................................TGCGGGAGAGAGGGGACAA.......................................................................................................1911.001.00---1.00---------------------------------
.....................................................................................................................TGCTCCTGCCCCTTCCTTCCAG..................................................2211.001.00-------1.00-----------------------------
..................................................GTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTCCTTT.....................................................8611.008.00-----------------------1.00-------------
...........................................................................................TGGTGGCATGTTGGGTTGTGTC............................................................................2211.001.00----------------1.00--------------------
..............CTGACGCGCTGTTGGCGG.............................................................................................................................................................1811.001.00------------------1.00------------------
...................................................................................................................................................................TGGCGGGATGATGACTT.........1721.001.00----------------------------1.00--------
.............................................................CAGGCCTGCGGGAGAGAGGGGACACC......................................................................................................2611.001.00------------------------1.00------------
.................ACGCGCTGTTGGCGGGCCG.........................................................................................................................................................1911.001.00---------------------------1.00---------
............................................................................................................................................................CTCATCCTGGCGGGATGATT.............201.000.00------------1.00------------------------
....................................................................................ACCATAATGGTGGCATGTTGGGTTG................................................................................2511.001.00--------------------1.00----------------
.............................CGGGCCGTGGTGGAGAAGCGCC..........................................................................................................................................221.000.00-----------------------------1.00-------
.................................................................................................................................................................CCTGGCGGGATGATGACTTTGTGC....2411.001.00----------1.00--------------------------
...........................................................................................TGGTGGCATGTTGGGTTG................................................................................1821.001.00--------------------------------0.50-0.50--
............................GCGGGCCGTGGTGGAGAAG..............................................................................................................................................1930.330.33-----------------------------------0.33-

Antisense strand
GCATCATGAGAAACCTGACGCGCTGTTGGCGGGCCGTGGTGGAGAAGCAGGTGGGCAGGAGCAGGCCTGCGGGAGAGAGGGGACACCATAATGGTGGCATGTTGGGTTGTGTCTTCATGCTCCTGCCCCTTCCTTCCAGGTGAACAATTTTCTGACCTCATCCTGGCGGGATGATGACTTTGTGCCACG
......................................................................(((((..(((((.((((.....))))(((((..(((.....))).))))).....)))))..)))))....................................................
.............................................................62...........................................................................139................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040008(GSM532893)
G727N. (cervix)
.....................................................................................................................................................TTCTGACCTCATCCTCATC..................... 197.000.00--7.00----------------------------------
....................................................................................................................ATGCTCCTGCCCCTTCA........................................................ 171.000.00---------------------1.00---------------
................GACGCGCTGTTGGCGGGC........................................................................................................................................................... 181.000.00-------------------------1.00-----------
......................................................................................................................GCTCCTGCCCCTTCCTTGG.................................................... 191.000.00--------1.00----------------------------
.....................................................................................................................GGAAGGAAGGGGCAGGAGCA.................................................... 2011.001.00-----------------1.00-------------------
.......................................................................................................................CTCCTGCCCCTTCCTTCCATCGG............................................... 231.000.00--------1.00----------------------------
........................................................................................................................TGGAAGGAAGGGGCAGGA................................................... 1830.670.67-------------------------------0.33----0.33
....................................CACCTGCTTCTCCACCA........................................................................................................................................ 1720.500.50---------------------------------0.50---
.........................................................................................................................TGGAAGGAAGGGGCAGG................................................... 1750.200.20-------------------------------0.20-----