ID: uc010jxe.1_intron_2_0_chr6_41020103_r.5p
GENE: UNC5CL(2)
chr6:41037615-41037864-


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(4)
BREAST
(10)
CELL-LINE
(1)
CERVIX
(1)
HEART
(3)
LIVER
(2)
OTHER
(7)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTGGAGAAGTGGCTGTTCTGAAGAGAGATGGGCGATATATATATTACTTGGTAAGATGGGGCCAATTCCTTTTTTTTTCAGGGCCAGTTCTTAATACATTTTAAGGATTTGTGAACAGATGGGCTGCACTGCATTTGTGTTGATCATGATGTTCTATTCTAGACAACTAAGAATGTCAAAAAGCTTCCTATCTTATGACAACTCCAGTCCAGTGATGGCGGCTACTTGGAGCACTGGGTTAGAAAGAAAT
...........................................................((((....((((........))))..(((((((((......)))))))))............)))).............................................................................................................................
...........................................................60................................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................ATTCCTTTTTTTTTCAAATG......................................................................................................................................................................2020.000.007.009.00-2.00------------2.00-----------------
..............................................................CAATTCCTTTTTTTTTCAG.........................................................................................................................................................................19110.0010.005.001.00-2.00--2.00---------------------------
................TCTGAAGAGAGATGGGCGA.......................................................................................................................................................................................................................1914.004.00--1.00--2.00---------------1.00------------
................TCTGAAGAGAGATGGGCGATATATA.................................................................................................................................................................................................................2513.003.00--3.00-------------------------------
.............................................................CCAATTCCTTTTTTTTG............................................................................................................................................................................173.000.001.002.00--------------------------------
................TCTGAAGAGAGATGGGCGATATATAT................................................................................................................................................................................................................2613.003.00--3.00-------------------------------
.......................................................................................................AGGATTTGTGAACAGATAA................................................................................................................................192.000.00--------------2.00-------------------
................TCTGAAGAGAGATGGGCGATATATATAT..............................................................................................................................................................................................................2812.002.00--2.00-------------------------------
.TGGAGAAGTGGCTGTTCTGAA....................................................................................................................................................................................................................................2112.002.00-----2.00----------------------------
...GAGAAGTGGCTGTTCTGAAGAGAGATGGG..........................................................................................................................................................................................................................2912.002.00----2.00-----------------------------
................................................................ATTCCTTTTTTTTTCAAACG......................................................................................................................................................................201.000.00-1.00--------------------------------
................................................................ATTCCTTTTTTTTTCAATAG......................................................................................................................................................................201.000.00---1.00------------------------------
.TGGAGAAGTGGCTGTTCTGAAGAGAGATGGG..........................................................................................................................................................................................................................3111.001.00--------1.00-------------------------
..GGAGAAGTGGCTGTTCTGAAGAGAGATGGGCG........................................................................................................................................................................................................................3211.001.00----1.00-----------------------------
......................................................................................................AAGGATTTGTGAACAGATGGGCTGCACTGC......................................................................................................................3011.001.00-------1.00--------------------------
............CTGTTCTGAAGAGAGGCGT...........................................................................................................................................................................................................................191.000.00----------1.00-----------------------
.......AGTGGCTGTTCTGAAGAGAGATGGG..........................................................................................................................................................................................................................2511.001.00-----1.00----------------------------
...........GCTGTTCTGAAGAGAGATG............................................................................................................................................................................................................................1911.001.00-------1.00--------------------------
.............TGTTCTGAAGAGAGATGGGCGAT......................................................................................................................................................................................................................2311.001.00-----------------------------1.00----
..GGAGAAGTGGCTGTTCTGAAGAGAGATGGG..........................................................................................................................................................................................................................3011.001.00----1.00-----------------------------
........................GAGATGGGCGATATATATATTACTTGA.......................................................................................................................................................................................................271.000.00------------1.00---------------------
.................CTGAAGAGAGATGGGCGATAT....................................................................................................................................................................................................................2111.001.00-----------------------1.00----------
.............TGTTCTGAAGAGAGATGGGCGATA.....................................................................................................................................................................................................................2411.001.00---------1.00------------------------
.......................................................................................................AGGATTTGTGAACAGATGGGCT.............................................................................................................................2211.001.00------------1.00---------------------
....................AAGAGAGATGGGCGAGCGC...................................................................................................................................................................................................................191.000.00----------1.00-----------------------
................................................................ATTCCTTTTTTTTTCAACCG......................................................................................................................................................................201.000.001.00---------------------------------
.............TGTTCTGAAGAGAGATGGGCGATATA...................................................................................................................................................................................................................2611.001.00--1.00-------------------------------
...................................................................................................................................................................................................TGACAACTCCAGTCCAGTGATGGCGGCT...........................2811.001.00---------------1.00------------------
.....................................................................................................TAAGGATTTGTGAACAGATGGG...............................................................................................................................2211.001.00-------1.00--------------------------
..............................................................CAATTCCTTTTTTTTTGG..........................................................................................................................................................................181.000.00------1.00---------------------------
................................................................................................................GAACAGATGGGCTGCACTGCATT...................................................................................................................2311.001.00--------------------1.00-------------
.....GAAGTGGCTGTTCTGAAGAGAGATGGGCGA.......................................................................................................................................................................................................................3011.001.00-------------------1.00--------------
..................TGAAGAGAGATGGGCGATA.....................................................................................................................................................................................................................1911.001.00---------1.00------------------------
..GGAGAAGTGGCTGTTTGTT.....................................................................................................................................................................................................................................191.000.00-----------------1.00----------------
................................................................ATTCCTTTTTTTTTCAATTC......................................................................................................................................................................201.000.00---1.00------------------------------
.............................................................................................................................................................................................................................CTACTTGGAGCACTGTGGT..........191.000.00-------------1.00--------------------
.............................................................CCAATTCCTTTTTTTCTCG..........................................................................................................................................................................191.000.00-1.00--------------------------------
...................................................................................................................CAGATGGGCTGCACTGC......................................................................................................................1711.001.00----------------------------1.00-----
.............TGTTCTGAAGAGAGATGATA.........................................................................................................................................................................................................................201.000.00---------------1.00------------------
.......AGTGGCTGTTCTGAAGAG.................................................................................................................................................................................................................................1811.001.00----1.00-----------------------------
...............................................................................AGGGCCAGTTCTTAATACATTTTAAG.................................................................................................................................................2611.001.00------------------1.00---------------
...............................................................................................................TGAACAGATGGGCTGCACTGCATTTG.................................................................................................................2611.001.00-------------------------1.00--------
..........................................................................................................................................GTTGATCATGATGTTCTGAAA...........................................................................................2121.000.50------------------------------1.00---
..GGAGAAGTGGCTGTTCTGAAGAGAGATGGGC.........................................................................................................................................................................................................................3111.001.00--------1.00-------------------------
.................CTGAAGAGAGATGGGCGATTT....................................................................................................................................................................................................................211.000.00-------------------------------1.00--
.............................................................CCAATTCCTTTTTTTTTCG..........................................................................................................................................................................191.000.001.00---------------------------------
................TCTGAAGAGAGATGGGCGATATATATATTA............................................................................................................................................................................................................3011.001.00--1.00-------------------------------
............................................................................................AATACATTTTAAGGATTTTTG.........................................................................................................................................211.000.00-----------1.00----------------------
..........................................................................................................................................GTTGATCATGATGTTCTGACA...........................................................................................2121.000.50---------------------------1.00------
..................................ATATATATATTACTTGATT.....................................................................................................................................................................................................191.000.00-----------1.00----------------------
......AAGTGGCTGTTCTGAAGAG.................................................................................................................................................................................................................................1911.001.00--------------------------1.00-------
..........................................................................................................................................GTTGATCATGATGTTCT...............................................................................................1720.500.50--------------------------------0.50-
.......................................................................................................................................................................................................................................CACTGGGTTAGAAAGA...1660.170.17---------------------------------0.17

Antisense strand
CTGGAGAAGTGGCTGTTCTGAAGAGAGATGGGCGATATATATATTACTTGGTAAGATGGGGCCAATTCCTTTTTTTTTCAGGGCCAGTTCTTAATACATTTTAAGGATTTGTGAACAGATGGGCTGCACTGCATTTGTGTTGATCATGATGTTCTATTCTAGACAACTAAGAATGTCAAAAAGCTTCCTATCTTATGACAACTCCAGTCCAGTGATGGCGGCTACTTGGAGCACTGGGTTAGAAAGAAAT
...........................................................((((....((((........))))..(((((((((......)))))))))............)))).............................................................................................................................
...........................................................60................................................................126..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................TTTTCAGGGCCAGTTCTGG............................................................................................................................................................. 191.000.00----------------------1.00-----------
...............................................................................................................................ACTGCATTTGTGTTGTCAG........................................................................................................ 191.000.00-------------1.00--------------------
....................................................................................................................................................................................................................................TTTCTAACCCAGTGCTC..... 1711.001.00------------------------1.00---------