ID: uc010jre.2_intron_4_0_chr6_28366251_r.5p
GENE: (1)
chr6:28367234-28367483-


(3)
B-CELL 		(2)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(2)
OTHER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
TTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCTGGCCCTGGGGGCCGCAGGTGAGCGATGTTGTGCTCTGTACGCTGCGAGCAGGTGGGCGGGAGATTGCTGTATTCCAGCTGCTGGGCCCCTCAGGCCCTGGCCGGTGCAGAGTGGACCCCGGTCCTCCCAAACCCAGGCGGATCCGCGGGAAGCTCTCCCTCCCCAAAGTGCGTTGGGACATTAGGATGAGGGTTTGGCTCCCAGTCTCTGCAGCAAT
....................................................((((........((((((((((((...(((((.(((((((.......))))...))).)))))(((((.....))))).)))..)))))))))...(((((((((.((........)).))).))).)))..))))..............................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037935(GSM510473)
293cand3. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037938(GSM510476)
293Red. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR189786GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCTCCT..........................................................22110.001.00-8.001.00-------1.00---------------------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCTCCC..........................................................22110.0010.006.00-----1.00-----1.00-------1.00----1.00------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCTCCA..........................................................2217.001.00-----5.00----1.001.00--------------------
.........................................................ATGTTGTGCTCTGTACG................................................................................................................................................................................1716.006.00---6.00----------------------------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCATC...........................................................215.000.00----5.00---------------------------
......................................................GCGATGTTGTGCTCTGTAC.................................................................................................................................................................................1914.004.00--4.00-----------------------------
.........................................................ATGTTGTGCTCTGTACGC...............................................................................................................................................................................1812.002.00------1.00-1.00-----------------------
....CTTCGCTCCGTAGGAGGG....................................................................................................................................................................................................................................1812.002.00--------2.00-----------------------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCT.............................................................1912.002.00--1.00------1.00----------------------
....................................................................................GTGGGCGGGAGATTGCTGTAT.................................................................................................................................................2111.001.00----------------------------1.00---
...........................TCTTCTGGCCCTGGGGGC.............................................................................................................................................................................................................1811.001.001.00-------------------------------
................GGAGGGAGTTCTCTTCAAT.......................................................................................................................................................................................................................191.000.00-----------------------------1.00--
.......................................................................ACGCTGCGAGCAGGTGGGCGGGAGACTG.......................................................................................................................................................281.000.00------------------------1.00-------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCGTC...........................................................211.000.00----1.00---------------------------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCTCC...........................................................2111.001.001.00-------------------------------
.................................................................................................................................................................................................................GACATTAGGATGAGGGTTTGGC...................2211.001.00--------------1.00-----------------
................GGAGGGAGTTCTCTTGGT........................................................................................................................................................................................................................181.000.00-----------------------1.00--------
.........................................................................GCTGCGAGCAGGTGGAAAA..............................................................................................................................................................191.000.00-------------------1.00------------
............................CTTCTGGCCCTGGGGGCCGCA.........................................................................................................................................................................................................2111.001.00--------------------------1.00-----
..............................................................................................................................................................................................................TGGGACATTAGGATGAGGGT........................2011.001.00--1.00-----------------------------
..................................................GTGAGCGATGTTGTGCTCTGTACGCTGCGA..........................................................................................................................................................................3011.001.00---------------------1.00----------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCTCCTCT........................................................2411.001.00------------1.00-------------------
..........................................................................................................................................................................CGGATCCGCGGGAAGCCTT.............................................................191.000.00-------1.00------------------------
.......................................................................................................................................................................................................................AGGATGAGGGTTTGGCAA.................181.000.00------------------1.00-------------
...................................................................CTGTACGCTGCGAGCAGGTGGG.................................................................................................................................................................2211.001.00--1.00-----------------------------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCTCCCAAT.......................................................2511.0010.00---------------1.00----------------
.......................................................................................GGCGGGAGATTGCTGATAG................................................................................................................................................191.000.00-------1.00------------------------
...........CCGTAGGAGGGAGTTCTC.............................................................................................................................................................................................................................1811.001.00------1.00-------------------------
..................................................................................................................................................................................................................................TTGGCTCCCAGTCTCTGCAGC...2111.001.00-----------------1.00--------------
...........................................................................................................................................................................................................................TGAGGGTTTGGCTCCCAGTCTCTGCAGCC..291.000.00----------------------1.00---------
............................CTTCTGGCCCTGGGGGCCGCAGGTGAGCGAT...............................................................................................................................................................................................3111.001.001.00-------------------------------
.................................GGCCCTGGGGGCCGCAGGTGAGCGATG..............................................................................................................................................................................................2711.001.00-------------1.00------------------
.............................................................................................................................................................................................CCCTCCCCAAAGTGCGTTGGGAC......................................2311.001.00-----------1.00--------------------
................................TGGCCCTGGGGGCCGCAGGTGAGCGATG..............................................................................................................................................................................................2811.001.00---------1.00----------------------
..........................................................................................................................................................................CGGATCCGCGGGAAGCTCTCAA..........................................................221.000.00----1.00---------------------------
...............................................................................................................................................................................................................GGGACATTAGGATGAGGG.........................1811.001.00---------1.00----------------------
...........................................GCCGCAGGTGAGCGATG..............................................................................................................................................................................................1720.500.50------------------------------0.50-

Antisense strand
TTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCTGGCCCTGGGGGCCGCAGGTGAGCGATGTTGTGCTCTGTACGCTGCGAGCAGGTGGGCGGGAGATTGCTGTATTCCAGCTGCTGGGCCCCTCAGGCCCTGGCCGGTGCAGAGTGGACCCCGGTCCTCCCAAACCCAGGCGGATCCGCGGGAAGCTCTCCCTCCCCAAAGTGCGTTGGGACATTAGGATGAGGGTTTGGCTCCCAGTCTCTGCAGCAAT
....................................................((((........((((((((((((...(((((.(((((((.......))))...))).)))))(((((.....))))).)))..)))))))))...(((((((((.((........)).))).))).)))..))))..............................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037935(GSM510473)
293cand3. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037938(GSM510476)
293Red. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR189786GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		TAX577746(Rovira)
total RNA. (breast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
......TCGCTCCGTAGGAGGGAC.................................................................................................................................................................................................................................. 181.000.00---------------------------1.00----
..................................GCCCTGGGGGCCGCAATTG..................................................................................................................................................................................................... 191.000.00-------1.00------------------------
...............................................................................................................................................................CCAAACCCAGGCGGATCCGCCT..................................................................... 221.000.00----------------1.00---------------
...............CAGAAGAGAACTCCCTCCT........................................................................................................................................................................................................................ 1911.001.00---1.00----------------------------
.........................................................................................................................................................................................................................................TTGCTGCAGAGACTGG. 1650.200.20-------------------------------0.20