ID: uc010jpx.2_intron_22_0_chr6_25520566_f.5p
GENE: (23)
chr6:25520516-25520765+


(2)
B-CELL 		(6)
BRAIN 		(1)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(4)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
CTCAAGCCCTAAAAACAAACCCTGAAAAAACAGAAGACGCTCTGCAAAAGGTATTAAAGAATCAGTAGCTTAATTACAAGAAATTCACATTTGAATTGTGGTTATGTTCCTGAACTTATAAACAATACTTTGTTATTTTACGAAGTTTTTTTAAATTTTATTTTATTTTTTCACATTGTCTTATGTTCTTATGACCACAACTGGGGTAATGCATGACTGGGGGAGGAGTAAACTAAGGAACACTAAAGCT
....................................................................................(((((.......))))).................((((....(((((((......)))))))...)))).................................................................................................
....................................................................................85......................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................TTTTTTAAATTTTATTTTAACAG.................................................................................2329.000.0018.0010.00-------------------------1.00----
..................................................................................................................................................TTTTTTAAATTTTATTTTATTTAAG...............................................................................2521.000.0016.005.00------------------------------
........................AAAAAACAGAAGACGCTCTGCA............................................................................................................................................................................................................2214.004.00--3.00--------------------------1.00--
.................................................................................................................................................TTTTTTTAAATTTTATTTTATTTTTTCACATTG........................................................................3313.003.00----2.00-----1.00---------------------
............................AACAGAAGACGCTCTGCAAAAG........................................................................................................................................................................................................2213.003.00------3.00-------------------------
.......................GAAAAAACAGAAGACGCTCTGCA............................................................................................................................................................................................................2313.003.00--1.00--------1.00--------1.00-----------
...............................AGAAGACGCTCTGCAAAA.........................................................................................................................................................................................................1812.002.00-----2.00--------------------------
...........................................................................................................................................................TTTTATTTTATTTTTTCAGGCG.........................................................................222.000.00-2.00------------------------------
.............................ACAGAAGACGCTCTGCAA...........................................................................................................................................................................................................1812.002.00---1.00-------1.00--------------------
..................................................................................................................................................TTTTTTAAATTTTATTTTATTTTTATTG............................................................................282.000.00-1.00--1.00---------------------------
...................................................................................................................................................TTTTTAAATTTTATTTTATTTTTTCACATTG........................................................................3112.002.001.00---------1.00---------------------
...............CAAACCCTGAAAAAACAGAAGA.....................................................................................................................................................................................................................2212.002.00------------2.00-------------------
................................GAAGACGCTCTGCAAAAGATA.....................................................................................................................................................................................................212.000.00---------2.00----------------------
...........................................................................................................................................................TTTTATTTTATTTTTTCACCCT.........................................................................221.000.00----1.00---------------------------
.....................CTGAAAAAACAGAAGACGCTCTGCG............................................................................................................................................................................................................251.000.00---1.00----------------------------
.................................AAGACGCTCTGCAAAAG........................................................................................................................................................................................................1711.001.00-------------1.00------------------
............................AACAGAAGACGCTCTGCAAAAGATAG....................................................................................................................................................................................................2611.003.00---1.00----------------------------
....................CCTGAAAAAACAGAAGA.....................................................................................................................................................................................................................1711.001.00----------------------------1.00---
......................TGAAAAAACAGAAGACGCTCTGCA............................................................................................................................................................................................................2411.001.00--1.00-----------------------------
...........AAAACAAACCCTGAAAAAACAGAAGA.....................................................................................................................................................................................................................2611.001.00-------1.00------------------------
.........................................................................................................................................................AATTTTATTTTATTTTTTCAAGAG.........................................................................241.000.00---------------------1.00----------
...............................AGAAGACGCTCTGCAAA..........................................................................................................................................................................................................1711.001.00---1.00----------------------------
..................................................................................................................................................TTTTTTAAATTTTATTTTATTTAAT...............................................................................251.000.00-1.00------------------------------
..............................CAGAAGACGCTCTGCAAA..........................................................................................................................................................................................................1811.001.00-----------------1.00--------------
.....................CTGAAAAAACAGAAGACGCTCTG..............................................................................................................................................................................................................2311.001.00--1.00-----------------------------
............................AACAGAAGACGCTCTGCAAAAGAAAG....................................................................................................................................................................................................2611.003.00---------------1.00----------------
.......................GAAAAAACAGAAGACGCTCTGCAA...........................................................................................................................................................................................................2411.001.00--------1.00-----------------------
.....................CTGAAAAAACAGAAGACGCTCTGCAAAAGAT......................................................................................................................................................................................................311.000.00-----1.00--------------------------
.................................AAGACGCTCTGCAAAAGAT......................................................................................................................................................................................................1911.001.00-------------1.00------------------
.................................AAGACGCTCTGCAAAAGGT......................................................................................................................................................................................................1911.001.00------------------1.00-------------
......................TGAAAAAACAGAAGACGCTCTGCAA...........................................................................................................................................................................................................2511.001.00--1.00-----------------------------
.........TAAAAACAAACCCTGAAAAAACAGAAGA.....................................................................................................................................................................................................................2811.001.00-------1.00------------------------
...............................................................................................................................................................ATTTTATTTTTTCACATAAG.......................................................................201.000.00--------------1.00-----------------
..................................................................................................................................................TTTTTTAAATTTTATTTTATTTAA................................................................................241.000.001.00-------------------------------
...............................AGAAGACGCTCTGCAAAAGATA.....................................................................................................................................................................................................221.000.00--------1.00-----------------------
................AAACCCTGAAAAAACAGAAGAC....................................................................................................................................................................................................................2211.001.00------------------------------1.00-
.............................................................................................................................................................TTATTTTATTTTTTCACATG.........................................................................201.000.00-1.00------------------------------
...........................................................................................................................................................TTTTATTTTATTTTTTCACCCTT........................................................................231.000.00----------1.00---------------------
............................AACAGAAGACGCTCTGCA............................................................................................................................................................................................................1811.001.00-------------------------1.00------
..........................AAAACAGAAGACGCTCTGCAA...........................................................................................................................................................................................................2111.001.00-------------------1.00------------
.......................GAAAAAACAGAAGACGCTCTGCAAA..........................................................................................................................................................................................................2511.001.00--------1.00-----------------------
....................................................................................................................................................................................................................ATGACTGGGGGAGGAGGAAT..................201.000.00-------1.00------------------------
.........................................................................................TTTGAATTGTGGTTATGTTCCT...........................................................................................................................................2211.001.00---------1.00----------------------
........................AAAAAACAGAAGACGCTCTG..............................................................................................................................................................................................................2011.001.00--1.00-----------------------------
.......................GAAAAAACAGAAGACGCT.................................................................................................................................................................................................................1811.001.00----------------1.00---------------
.........................................................................................................................................................................TTCACATTGTCTTATCTCA..............................................................191.000.00--------------------------1.00-----
...............................AGAAGACGCTCTGCA............................................................................................................................................................................................................1540.250.25-------------------------------0.25

Antisense strand
CTCAAGCCCTAAAAACAAACCCTGAAAAAACAGAAGACGCTCTGCAAAAGGTATTAAAGAATCAGTAGCTTAATTACAAGAAATTCACATTTGAATTGTGGTTATGTTCCTGAACTTATAAACAATACTTTGTTATTTTACGAAGTTTTTTTAAATTTTATTTTATTTTTTCACATTGTCTTATGTTCTTATGACCACAACTGGGGTAATGCATGACTGGGGGAGGAGTAAACTAAGGAACACTAAAGCT
....................................................................................(((((.......))))).................((((....(((((((......)))))))...)))).................................................................................................
....................................................................................85......................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189786GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................TTCACATTTGAATTGTAC..................................................................................................................................................... 181.000.00-----------------------1.00--------
..........AAAAACAAACCCTGATTCT............................................................................................................................................................................................................................. 191.000.00------------------------1.00-------
......................CGTCTTCTGTTTTTTCA................................................................................................................................................................................................................... 1711.001.00----------------------1.00---------