ID: uc010jon.2_intron_1_0_chr6_10527894_f.3p
GENE: (2)
chr6:10528664-10528913+


(7)
B-CELL 		(6)
BREAST 		(25)
CELL-LINE 		(3)
HEART 		(4)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(3)
OTHER 		(5)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
CAGGCTGTTGAACACAATGATTAACAGGAAGCAGGGGAGGGGACATAGTTACTAGACTCTGGCCGGGACAAGAGGCTGAGGTTAAGGTCTTAGAGCCGATGACTTGCAGAATGGTCACCTCACCCACTTGTAATTTCATGGTGGGAACAGGTGGACCCCCTGGAATCAGAACCTCTCTGAGGACATCTGTTTTTGTGTAGACACAGGTTGCAGGTTAGCAGGAGAACAGGCAAGCCAAATGCAAAGGAGC
...........................................................((((((..........(((((((((.(((......)))..)))))).)))..)))))).....................................................................................................................................
........................................................57............................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189784GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783
.............................................................GCCGGGACAAGAGGCTGAGG.........................................................................................................................................................................20113.0013.0012.001.00------------------------------------------------------------
..............................................................................................GCCGATGACTTGCAGAATGGT.......................................................................................................................................2118.008.00-3.00-------1.00-1.00--2.00------------------1.00----------------------------
..............CAATGATTAACAGGAACAG.........................................................................................................................................................................................................................194.000.00-----------------2.00-------2.00------------------------------------
.............................................................GCCGGGACAAGAGGCTGAGGT........................................................................................................................................................................2114.004.00-2.00--------1.00----------------1.00----------------------------------
.................................................................................................GATGACTTGCAGAATGGT.......................................................................................................................................1814.004.00--1.00-1.00--------------------------1.00------------------1.00-----------
............................................................................................................................................GTGGGAACAGGTGGACCC............................................................................................1814.004.004.00-------------------------------------------------------------
.....................................AGGGGACATAGTTACTAG...................................................................................................................................................................................................1813.003.00-----------2.00---------1.00----------------------------------------
........................................................................................CTTAGAGCCGATGACTTGCAGAATGGTCACCTCA................................................................................................................................3413.003.00----------------1.00------2.00--------------------------------------
...........................................................TGGCCGGGACAAGAGGC..............................................................................................................................................................................1713.003.00---1.00-2.00--------------------------------------------------------
...............................................................CGGGACAAGAGGCTGAGGTTA......................................................................................................................................................................2113.003.00--1.00-------2.00---------------------------------------------------
...............AATGATTAACAGGAACAGT........................................................................................................................................................................................................................193.000.00-------2.00----1.00-------------------------------------------------
...........................................................................................AGAGCCGATGACTTGCAGAATGGTCACCTCACCCA............................................................................................................................3512.002.00-------------1.00------------1.00-----------------------------------
..........................................................................................................................................................................................................................CAGGAGAACAGGCAAGCC..............1812.002.00----2.00---------------------------------------------------------
..................................................ACTAGACTCTGGCCGGGACAAGA.................................................................................................................................................................................2312.002.00---------------2.00----------------------------------------------
............................................ATAGTTACTAGACTCTGGCCGGGACAAGAGGCTGAG..........................................................................................................................................................................3612.002.00-------------1.00------------1.00-----------------------------------
.............................................................GCCGGGACAAGAGGCTGA...........................................................................................................................................................................1812.002.00--------1.00--------------------------------1.00--------------------
...............................................................CGGGACAAGAGGCTGAGGTTAA.....................................................................................................................................................................2212.002.00------------------1.00---------------1.00---------------------------
................................................................GGGACAAGAGGCTGAGGT........................................................................................................................................................................1812.002.00--1.00----1.00------------------------------------------------------
...................................................................................................................................................................................AGGACATCTGTTTTTGGTTT...................................................202.000.00--------------------2.00-----------------------------------------
.........................................................TCTGGCCGGGACAAGAGGC..............................................................................................................................................................................1912.002.002.00-------------------------------------------------------------
..................................................ACTAGACTCTGGCCGGGAT.....................................................................................................................................................................................191.000.00------------------------------------------1.00-------------------
................................................................................................................................................................................................TTGTGTAGACACAGGTTGC.......................................1911.001.00--------------------------------1.00-----------------------------
........................................................................................CTTAGAGCCGATGACTTGCAGAATGGTCACCT..................................................................................................................................3211.001.00----------------1.00---------------------------------------------
.............................................TAGTTACTAGACTCTGGC...........................................................................................................................................................................................1811.001.00-----1.00--------------------------------------------------------
......................................................................................................CTTGCAGAATGGTCACCT..................................................................................................................................1811.001.00------1.00-------------------------------------------------------
..........................................................CTGGCCGGGACAAGAGGC..............................................................................................................................................................................1811.001.00---------------------------------------------------1.00----------
..................................GGGAGGGGACATAGTTACTAGA..................................................................................................................................................................................................2211.001.00---------------------------------------1.00----------------------
................................................................GGGACAAGAGGCTGAGGTTA......................................................................................................................................................................2011.001.00---------------------------------------------------------1.00----
..........................................................CTGGCCGGGACAAGAGGCTG............................................................................................................................................................................2011.001.00-------------------------------------------1.00------------------
.............................................................GCCGGGACAAGAGGCTGAG..........................................................................................................................................................................1911.001.00-----------------------------1.00--------------------------------
...........................................................TGGCCGGGACAAGAGG...............................................................................................................................................................................1611.001.00---1.00----------------------------------------------------------
................................................TTACTAGACTCTGGCCGG........................................................................................................................................................................................1811.001.00--------1.00-----------------------------------------------------
..............CAATGATTAACAGGAACA..........................................................................................................................................................................................................................181.000.00----------------------------------------------1.00---------------
.....................................AGGGGACATAGTTACTA....................................................................................................................................................................................................1711.001.00------------------------------------------------1.00-------------
........................................................CTCTGGCCGGGACAAGAGGCTGAG..........................................................................................................................................................................2411.001.00-----------------------------------1.00--------------------------
.......................ACAGGAAGCAGGGGACTG.................................................................................................................................................................................................................181.000.00------------------------1.00-------------------------------------
..........AACACAATGATTAACAGG..............................................................................................................................................................................................................................1811.001.00---1.00----------------------------------------------------------
...................................................CTAGACTCTGGCCGGGACAAGAGGCTG............................................................................................................................................................................2711.001.00--1.00-----------------------------------------------------------
..........................................................CTGGCCGGGACAAGAGGCTGAGGT........................................................................................................................................................................2411.001.00-------------------1.00------------------------------------------
..............................................................................AGGTTAAGGTCTTAGAGC..........................................................................................................................................................1811.001.00---1.00----------------------------------------------------------
................................................................................GTTAAGGTCTTAGAGCCGATGACTTGCAGAATGGT.......................................................................................................................................3511.001.00--------------------------------------------------------1.00-----
.............................................................GCCGGGACAAGAGGCTGAGGTTACGG...................................................................................................................................................................261.000.00--------------------------------------1.00-----------------------
..................................................................................................ATGACTTGCAGAATGGTCAC....................................................................................................................................2011.001.00------1.00-------------------------------------------------------
........................................................................................CTTAGAGCCGATGACTTGCAGAATGG........................................................................................................................................2611.001.00----------------------------1.00---------------------------------
..................................................ACTAGACTCTGGCCGGGACAA...................................................................................................................................................................................2111.001.00---------1.00----------------------------------------------------
................................................................................................................................................................................CTGAGGACATCTGTTTTTGTGTAGACA...............................................2711.001.00--------------------------------------------1.00-----------------
.......................................................................................................................................................................................CATCTGTTTTTGTGTAGACACA.............................................2211.001.00-------------------------------------1.00------------------------
.........................................................................................TTAGAGCCGATGACTTGCAGAATGGTCACCTCA................................................................................................................................3311.001.00------------------------------------1.00-------------------------
..............................................................................................GCCGATGACTTGCAGAAT..........................................................................................................................................1811.001.00--1.00-----------------------------------------------------------
................................AGGGGAGGGGACATAGTT........................................................................................................................................................................................................1811.001.00---------1.00----------------------------------------------------
..........................................................................................................CAGAATGGTCACCTCACCCA............................................................................................................................2011.001.00---------------------1.00----------------------------------------
.............................................................GCCGGGACAAGAGGCTGAGGTTAAGGTCTTAGAG...........................................................................................................................................................3411.001.00-------------------------------------------------------1.00------
...................................................................................................TGACTTGCAGAATGGTCACC...................................................................................................................................2011.001.00---------------------------------------------1.00----------------
......................................................GACTCTGGCCGGGACAAG..................................................................................................................................................................................1811.001.00------------------------------1.00-------------------------------
..............................................................................................GCCGATGACTTGCAGAATGG........................................................................................................................................2011.001.00-1.00------------------------------------------------------------
.....................................................AGACTCTGGCCGGGACAA...................................................................................................................................................................................1811.001.00--------1.00-----------------------------------------------------
.........................................................................................................................................ATGGTGGGAACAGGTGGA...............................................................................................1811.001.00------------------1.00-------------------------------------------
...................................................CTAGACTCTGGCCGGGACAAG..................................................................................................................................................................................2111.001.00------------------------1.00-------------------------------------
.................................................TACTAGACTCTGGCCGGG.......................................................................................................................................................................................1811.001.00-----------------------------------------------1.00--------------
....................................................TAGACTCTGGCCGGGACAAGA.................................................................................................................................................................................2111.001.00-------------------1.00------------------------------------------
...............AATGATTAACAGGAACTCG........................................................................................................................................................................................................................191.000.00------------1.00-------------------------------------------------
.....................................................................AAGAGGCTGAGGTTAAGGT..................................................................................................................................................................1911.001.00----1.00---------------------------------------------------------
............................................ATAGTTACTAGACTCTGGC...........................................................................................................................................................................................1911.001.00-------------------------------------------------1.00------------
.................................................................................................................................................................................TGAGGACATCTGTTTTTGTGTAGACACAGGTTGCAGGTTAGCAGGAGAACAGGCA..................5511.001.00----------------------------------------1.00---------------------
....................................................................................................................................................AGGTGGACCCCCTGGAA.....................................................................................1711.001.00----------------------------------------------------1.00---------
...................................................................ACAAGAGGCTGAGGTTAAGGT..................................................................................................................................................................2111.001.00----------------------1.00---------------------------------------
................................................................GGGACAAGAGGCTGAGGTGA......................................................................................................................................................................2011.002.00-1.00------------------------------------------------------------
.......................................................................................................................................................................................................GACACAGGTTGCAGGTTAG................................1911.001.00----------------------1.00---------------------------------------
...............................................................................................CCGATGACTTGCAGAATGGT.......................................................................................................................................2011.001.00------1.00-------------------------------------------------------
................................................................................................................................................................................................................................AACAGGCAAGCCAAATGCAAAGGAG.2511.001.00------------------------------------------------------1.00-------
...................................................................................................................................AATTTCATGGTGGGAACAGGTG.................................................................................................2211.001.00-----------------------------------------------------1.00--------
...............................................................CGGGACAAGAGGCTGAGG.........................................................................................................................................................................1811.001.00-1.00------------------------------------------------------------
......................................................................................GTCTTAGAGCCGATGACTTGCAGAATGG........................................................................................................................................2811.001.00--1.00-----------------------------------------------------------
..............................................................CCGGGACAAGAGGCTGAG..........................................................................................................................................................................1820.500.50-----------------------------------------------------------0.50--
......................................GGGGACATAGTTACTAG...................................................................................................................................................................................................1720.500.50---------------------------0.50----------------------------------
.....................................................................AAGAGGCTGAGGTTAAGG...................................................................................................................................................................1820.500.50--0.50-----------------------------------------------------------

Antisense strand
CAGGCTGTTGAACACAATGATTAACAGGAAGCAGGGGAGGGGACATAGTTACTAGACTCTGGCCGGGACAAGAGGCTGAGGTTAAGGTCTTAGAGCCGATGACTTGCAGAATGGTCACCTCACCCACTTGTAATTTCATGGTGGGAACAGGTGGACCCCCTGGAATCAGAACCTCTCTGAGGACATCTGTTTTTGTGTAGACACAGGTTGCAGGTTAGCAGGAGAACAGGCAAGCCAAATGCAAAGGAGC
...........................................................((((((..........(((((((((.(((......)))..)))))).)))..)))))).....................................................................................................................................
........................................................57............................................................119.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR189784GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR189785SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		GSM359204(GSM359204)
HepG2_nucl_low. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189783
.........................................................CTTGTCCCGGCCAGA.................................................................................................................................................................................. 1520.500.50----------------------------------------------------------0.50---
.......................CCTCCCCTGCTTCCTGT.................................................................................................................................................................................................................. 1740.250.25------------------------------------------------------------0.25-
....CATTGTGTTCAACAG....................................................................................................................................................................................................................................... 1550.200.20-------------------------------------------------------------0.20