ID: uc010jhy.1_intron_2_0_chr5_151169966_f
GENE: G3BP1(3)
chr5:151169916-151170499+


(1)
AGO2.ip
(4)
B-CELL
(1)
BRAIN
(3)
BREAST
(12)
CELL-LINE
(4)
CERVIX
(4)
HEART
(1)
HELA
(2)
LIVER
(2)
OTHER
(7)
SKIN
(1)
TESTES
(1)
UTERUS
(2)
XRN.ip

Sense strand
GGGGATTGGATTCAAATGGAAAGCCAGCAGATGCAGTCTACGGACAGAAAGTAAGCATTTCAAGCCTTATTTAGGCTGTTAAGCAGGTAGAAAATAACTCATAAAATTGAAGTGGATCATACTTAATAGATTTGCTGATAAAGATCCAGTTTCTCAACTTTTTAGTAAAAGTTGATGTGTTTTATTACTATTTGATTAATATATTTGTTGAAATACTTATGTGATGTCAGATTTGTTAATTTTGTATGATATATTCTAAAGCTTTTGTGTGTTGGAAGATAATTGGCTTTAGCATGGGGATCATCTTTTCTAAACTTTGAAAAGTGTGTTAATTCAGGACAGTTATTTAAAAAACTCAAGCGCGGTCACTGGGAATAGAGTATACAAAGAAACATCAAAATTCAGTCTGCATATCCTGTAATTTAAATATACACATTCTCTTTGTGTTGTGTTGGAAGGTTTTTTTTAGTTGGAGGTTATTTAAATTTTAAGGCATTCTCAGTTGATTATTATTATTATTATTATTTTTTTAAGGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAA
....................................................................................................................................................................................................................................................................................................................................................................................................................................................((...(((....(((((..(((((((....(((.......)))...)))))))..)))))...)))..))..............................................................................
................................................................................................................................................................................................................................................................................................................................................................................................................................................433..................................................................................................534................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040018(GSM532903)
G701N. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTGTGTTGTGTAGGG................................................................................................................................19113.000.00113.00------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGAGTATACAAAGAAACATA............................................................................................................................................................................................262.000.00----------2.00--------------------------------
....................................TCTACGGACAGAAAGTAAGCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00-----2.00-------------------------------------
.GGGATTGGATTCAAATGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00---------2.00---------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATTATTATTATTTTTTTCAG..................................................252.000.00--2.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATTATTATTATTATTTTTTTCAG..................................................282.000.00-2.00-----------------------------------------
..GGATTGGATTCAAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.501.50------------1.50------------------------------
................TGGAAAGCCAGCAGATGCAGTCTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---1.00---------------------------------------
....................................................................................................................TCATACTTAATAGATTTGCTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------------------------------1.00----
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAAAACTTCACCAACTGCCAA.....241.000.00------1.00------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTATTTTTCCAG...................................................281.000.00--1.00----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTATTTTTTTATTTG................................................291.000.00----1.00--------------------------------------
................TGGAAAGCCAGCAGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------1.00-------------------------
...GATTGGATTCAAATGGAAAGCCAGCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00----------------------------------------1.00--
..........................................................................................................................................................................GTTGATGTGTTTTATGTC............................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------1.00------------
..............AATGGAAAGCCAGCAGATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00--------------------1.00----------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTATTTTTCTAT...................................................281.000.00----1.00--------------------------------------
...............................TGCAGTCTACGGACAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------1.00--------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTTTTTTAATTG................................................261.000.00-1.00-----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTTTTTTACTAG................................................261.000.00-----------1.00-------------------------------
......TGGATTCAAATGGAAAGCCAGCAGATGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-------------------------1.00-----------------
..............AATGGAAAGCCAGCAGATGCAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------------------------1.00------
.GGGATTGGATTCAAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------1.00-----------
.....TTGGATTCAAATGGAAAGCCAGCAGATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00---1.00---------------------------------------
..........................GCAGATGCAGTCTACGGACAGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----------------------------------1.00-------
..............AATGGAAAGCCAGCAGATGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---------------------------------------1.00---
.............AAATGGAAAGCCAGCAGATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00---------------1.00---------------------------
............................AGATGCAGTCTACGGACAGAAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00---------------------------1.00---------------
................................................................................................................................................................................................................................................................................TGGAAGATAATTGGCTTTAGCATGGGGAT...........................................................................................................................................................................................................................................................................................2911.001.00-------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................................................................................ATTCAGGACAGTTATTTAAAAAACTCAAGCG..............................................................................................................................................................................................................................3111.001.00------------------1.00------------------------
......................................................................................................................................................................................................................................................................................................................................................................AGCGCGGTCACTGGGAATAGAGCATA........................................................................................................................................................................................................261.000.00-------1.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTTTTTTCCCG.................................................251.000.00--------1.00----------------------------------
..........................GCAGATGCAGTCTACGGACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------1.00-------------
.............................GATGCAGTCTACGGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------------1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTATTTTTCCAG...................................................261.000.00--1.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCACAAAACTTCACCAACTGCCACACCA.3111.001.00------1.00------------------------------------
......TGGATTCAAATGGAAAGCCAGCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---1.00---------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTGTGTTGTGTAGGT................................................................................................................................191.000.001.00------------------------------------------
....................................TCTACGGACAGAAAGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------1.00----------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTTTTTTCAG..................................................241.000.00-1.00-----------------------------------------
..................................................GTAAGCATTTCAAGCCTTATTTAGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00--------1.00----------------------------------
....ATTGGATTCAAATGGAAAGCCAGCAGATGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00-------------------1.00-----------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTCACCAACTGC........1611.001.00--------------------------------1.00----------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTATTTTTTATCG..................................................291.000.00-1.00-----------------------------------------
...............................TGCAGTCTACGGACAGAAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------------1.00---------------------
.........................AGCAGATGCAGTCTACGGACAGAAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00------------------------1.00------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATTATTATTATTATTTTTTCTAG..................................................281.000.00--1.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTATTTTTTTAAG..................................................2931.001.00-0.33---------0.67-------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................CACTGGGAATAGAGTATA........................................................................................................................................................................................................1811.001.00----------------------------------1.00--------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTATTTTTTTCAG..................................................271.000.00--1.00----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTATTTTTTCTAG..................................................271.000.00-1.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTTTTTTCAG..................................................261.000.00-1.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTTTTTTAAG..................................................2670.570.57-0.14--0.29------0.14-------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATTATTATTATTTTTTTAAG..................................................2760.330.33-0.170.17----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTATTTTTTTAA...................................................2870.290.29----0.14------0.14-------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATTATTATTATTATTTTTTTAAG..................................................2860.170.17-0.17-----------------------------------------
....ATTGGATTCAAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1660.170.17-------------0.17-----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACTGCCACACCA.1570.140.14------------------------------------------0.14
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTATTATTATTATTATTTTTTTAACAG................................................3170.140.29----0.14--------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTATTATTATTATTTTTTTAAG..................................................2590.110.11----0.11--------------------------------------

Antisense strand
GGGGATTGGATTCAAATGGAAAGCCAGCAGATGCAGTCTACGGACAGAAAGTAAGCATTTCAAGCCTTATTTAGGCTGTTAAGCAGGTAGAAAATAACTCATAAAATTGAAGTGGATCATACTTAATAGATTTGCTGATAAAGATCCAGTTTCTCAACTTTTTAGTAAAAGTTGATGTGTTTTATTACTATTTGATTAATATATTTGTTGAAATACTTATGTGATGTCAGATTTGTTAATTTTGTATGATATATTCTAAAGCTTTTGTGTGTTGGAAGATAATTGGCTTTAGCATGGGGATCATCTTTTCTAAACTTTGAAAAGTGTGTTAATTCAGGACAGTTATTTAAAAAACTCAAGCGCGGTCACTGGGAATAGAGTATACAAAGAAACATCAAAATTCAGTCTGCATATCCTGTAATTTAAATATACACATTCTCTTTGTGTTGTGTTGGAAGGTTTTTTTTAGTTGGAGGTTATTTAAATTTTAAGGCATTCTCAGTTGATTATTATTATTATTATTATTTTTTTAAGGAAATCCACAGGAAAGTGATGTCACAAAACTTCACCAACTGCCACACCAA
....................................................................................................................................................................................................................................................................................................................................................................................................................................................((...(((....(((((..(((((((....(((.......)))...)))))))..)))))...)))..))..............................................................................
................................................................................................................................................................................................................................................................................................................................................................................................................................................433..................................................................................................534................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR040018(GSM532903)
G701N. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR040011(GSM532896)
G529T. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
TAX577740(Rovira)
total RNA. (breast)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR040025(GSM532910)
G613T. (cervix)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................................................TAAAAGTTGATGTGTATCT................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------------------------1.00-
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTTTTTTAAGTATT.............................................. 191.000.00---------------------------------1.00---------
............................................CAGAAAGTAAGCATTACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------------1.00-------------------
...................AAAGCCAGCAGATGCAGGGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 211.000.00-------------------------------------1.00-----
............................................CAGAAAGTAAGCATTCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------------------1.00--------------------