ID: uc010jaz.1_intron_2_0_chr5_89822820_r.3p
GENE: (1)
chr5:89822770-89823019-


(1)
BRAIN
(1)
BREAST
(5)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(2)
SKIN

Sense strand
TATTGTCATCCATTTTATATACTCAGAGTTTTGGAGTTGGTCTTTTCTGTTTTTTGTTTGTTTGTTTTTGTTTCGCTTGGTACTCATCCATAGTATTCAAAAAATAGTGAGTCTTTGAGATGTTATTTTGCTTTGGCTTCCATGACATAACACTTCCATGGTTTCTCCCTCTTCTGGACACTCCTTATCCATATTTTCAGGCTGATTTCCTTTCACCAAGATACTGAATTTTGGACTTCTTCAAGGCTCA
........................................................((..((..((((((....((((((.......))).)))...))))))..))..))...........................................................................................................................................
..................................................51...............................................................116....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR040042(GSM532927)
G428N. (cervix)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
..............................................................................................ATTCAAAAAATAGTGCCA..........................................................................................................................................1826.000.00--18.008.00----------
...........................................TTTCTGTTTTTTGTTTGGGG...........................................................................................................................................................................................205.000.002.003.00------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTCTGC..............................................................................................................................................................................275.000.005.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTCTTG..............................................................................................................................................................................294.000.002.002.00------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGCTGG................................................................................................................................................................................272.000.002.00-------------
......................................................TGTTTGTTTGTTTTTGTTTCCG..............................................................................................................................................................................222.000.00-2.00------------
....................................TTGGTCTTTTCTGTTTTTTGTTTTGG............................................................................................................................................................................................262.000.00-2.00------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTTCGC..............................................................................................................................................................................2912.002.002.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTTCTGTT............................................................................................................................................................................312.000.001.001.00------------
.........................................CTTTTCTGTTTTTTGTTTGTTTGTTCTTG....................................................................................................................................................................................292.000.002.00-------------
.............................................TCTGTTTTTTGTTTGTTTGTTTTTAGAC.................................................................................................................................................................................282.000.00-2.00------------
....................................................TTTGTTTGTTTGTTTTTGTTTCGGGTG...........................................................................................................................................................................272.000.002.00-------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTCTCC..............................................................................................................................................................................271.000.001.00-------------
................................................GTTTTTTGTTTGTTTGTTTTTGTTTCGC..............................................................................................................................................................................2811.001.001.00-------------
.........................................CTTTTCTGTTTTTTGTTAC..............................................................................................................................................................................................191.000.001.00-------------
...........................................TTTCTGTTTTTTGTTTGTTTGTTTCTG....................................................................................................................................................................................271.000.001.00-------------
..................................................TTTTTGTTTGTTTGTTTTTGTTTCGGG.............................................................................................................................................................................271.000.001.00-------------
..........................................TTTTCTGTTTTTTGTTTGTTTGTTTTTGC...................................................................................................................................................................................291.000.00-1.00------------
..............................................................................................ATTCAAAAAATAGTGAAACA........................................................................................................................................201.000.00---1.00----------
..............................................CTGTTTTTTGTTTGTTTGTTTTTTGCA.................................................................................................................................................................................271.000.001.00-------------
..................................AGTTGGTCTTTTCTGTTTT.....................................................................................................................................................................................................1911.001.00-1.00------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTCTAC..............................................................................................................................................................................271.000.001.00-------------
....................................................................................................................................................................................................TCAGGCTGATTTCCTTCCAT..................................201.000.00-------1.00------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTTCTTTC............................................................................................................................................................................311.000.00-1.00------------
...............................................TGTTTTTTGTTTGTTTGTTACC.....................................................................................................................................................................................221.000.00-1.00------------
............................................TTCTGTTTTTTGTTTGTTTGTTTTTTTTG.................................................................................................................................................................................291.000.00-1.00------------
....................................................................................................................GAGATGTTATTTTGCGTTT...................................................................................................................191.000.00----1.00---------
....................................................TTTGTTTGTTTGTTTTTGTTTCGCTTCCC.........................................................................................................................................................................291.000.001.00-------------
................................................GTTTTTTGTTTGTTTGTTTTTGTTTCTG..............................................................................................................................................................................281.000.00-1.00------------
............................................TTCTGTTTTTTGTTTGTTTGTTTTTTTCG.................................................................................................................................................................................291.000.00-1.00------------
.............................................TCTGTTTTTTGTTTGTTTGTTTTAAC...................................................................................................................................................................................261.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTC.................................................................................................................................................................................261.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGGGGG................................................................................................................................................................................271.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTCTAT.....................................................................................................................................................................................221.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTTCT...............................................................................................................................................................................281.000.00-1.00------------
.............................................TCTGTTTTTTGTTTGTTTGTTTTTCAC..................................................................................................................................................................................271.000.00-1.00------------
...................................................TTTTGTTTGTTTGTTTTTGTCGGG...............................................................................................................................................................................241.000.00-1.00------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTTCGCTCGG..........................................................................................................................................................................311.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGGG..................................................................................................................................................................................251.000.001.00-------------
..................................................TTTTTGTTTGTTTGTTTTTGTTTATGT.............................................................................................................................................................................271.000.00-1.00------------
.............................................................TTGTTTTTGTTTCGCCTGG..........................................................................................................................................................................191.000.001.00-------------
...........................................TTTCTGTTTTTTGTTTGTTTGTTTTTGTCT.................................................................................................................................................................................301.000.001.00-------------
.............................................TCTGTTTTTTGTTTGTTCGAG........................................................................................................................................................................................211.000.001.00-------------
.............................................TCTGTTTTTTGTTTGTTTGTTTTGTA...................................................................................................................................................................................261.000.001.00-------------
..............................................................................................................................TTTGCTTTGGCTTCC.............................................................................................................1501.001.00---------1.00----
....................................................TTTGTTTGTTTGTTTTTGTTTCGTCCT...........................................................................................................................................................................271.000.001.00-------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTTCCG..............................................................................................................................................................................271.000.001.00-------------
................................................GTTTTTTGTTTGTTTGTTTTTGTTCGG...............................................................................................................................................................................271.000.001.00-------------
................................................GTTTTTTGTTTGTTTGTTTTTGTTTCTGTT............................................................................................................................................................................301.000.001.00-------------
..........................................TTTTCTGTTTTTTGTTTGGGG...........................................................................................................................................................................................211.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTTCTGTA............................................................................................................................................................................311.000.001.00-------------
..............................................................................................ATTCAAAAAATAGTGCCAC.........................................................................................................................................191.000.00--1.00-----------
.................................................TTTTTTGTTTGTTTGTTTTTGTGGCC...............................................................................................................................................................................261.000.001.00-------------
.....................................................TTGTTTGTTTGTTTTTGTTTCGTGG............................................................................................................................................................................251.000.00-1.00------------
......................................................TGTTTGTTTGTTTTTGTTTCACTA............................................................................................................................................................................241.000.00-1.00------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTCCGC..............................................................................................................................................................................271.000.001.00-------------
..............................................CTGTTTTTTGTTTGTTTGTTTTTCG...................................................................................................................................................................................251.000.00-1.00------------
....................................................TTTGTTTGTTTGTTTTTGTTTCCGC.............................................................................................................................................................................251.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTGGCT..............................................................................................................................................................................291.000.001.00-------------
..............................................................................................ATTCAAAAAATAGTGGTA..........................................................................................................................................181.000.00---1.00----------
..................................................TTTTTGTTTGTTTGTTTTTGTTTCCG..............................................................................................................................................................................261.000.001.00-------------
.....................................................TTGTTTGTTTGTTTTTGTTTCACC.............................................................................................................................................................................241.000.001.00-------------
.............................................TCTGTTTTTTGTTTGGGGT..........................................................................................................................................................................................191.000.001.00-------------
............................TTTTGGAGTTGGTCTTTTGGT.........................................................................................................................................................................................................211.000.00--------1.00-----
.............................................TCTGTTTTTTGTTTGTTTAGGC.......................................................................................................................................................................................221.000.001.00-------------
...............................................TGTTTTTTGTTTGTTTGTTTTTGTTTCTG..............................................................................................................................................................................291.000.00-1.00------------
.............................................................................................................................................................................................................................TACTGAATTTTGGACTCTG..........191.000.00-----1.00--------
.....................................TGGTCTTTTCTGTTTTTTGTAGA..............................................................................................................................................................................................231.000.00-1.00------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTTCCTTG............................................................................................................................................................................291.000.00-----------1.00--
.............................................TCTGTTTTTTGTTTGTTTGTTCGTC....................................................................................................................................................................................251.000.001.00-------------
...........................................................GTTTGTTTTTGTTTCGCCTGG..........................................................................................................................................................................211.000.001.00-------------
....................................................TTTGTTTGTTTGTTTTTGTTTCCTGC............................................................................................................................................................................261.000.001.00-------------
................................................GTTTTTTGTTTGTTTGTTTTTGTTCTGC..............................................................................................................................................................................281.000.001.00-------------
.............................................................................................................................................................................................................................TACTGAATTTTGGACTTC...........1820.500.50------------0.50-
.................................................TTTTTTGTTTGTTTGTTTTTGTTTCGTTG............................................................................................................................................................................2940.500.50-0.50------------
...................................................TTTTGTTTGTTTGTTTTTGTTTCGGG.............................................................................................................................................................................2640.500.250.50-------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTTCG...............................................................................................................................................................................2640.500.500.250.25------------
.................................................TTTTTTGTTTGTTTGTTTTTGTTTCGGA.............................................................................................................................................................................2840.250.500.25-------------
...................................................TTTTGTTTGTTTGTTTTTGTTTCG...............................................................................................................................................................................2440.250.25-0.25------------
...................................................TTTTGTTTGTTTGTTTTTGTTTCGGGTG...........................................................................................................................................................................2840.250.25-0.25------------

Antisense strand
TATTGTCATCCATTTTATATACTCAGAGTTTTGGAGTTGGTCTTTTCTGTTTTTTGTTTGTTTGTTTTTGTTTCGCTTGGTACTCATCCATAGTATTCAAAAAATAGTGAGTCTTTGAGATGTTATTTTGCTTTGGCTTCCATGACATAACACTTCCATGGTTTCTCCCTCTTCTGGACACTCCTTATCCATATTTTCAGGCTGATTTCCTTTCACCAAGATACTGAATTTTGGACTTCTTCAAGGCTCA
........................................................((..((..((((((....((((((.......))).)))...))))))..))..))...........................................................................................................................................
..................................................51...............................................................116....................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040043(GSM532928)
G428T. (cervix)
SRR040042(GSM532927)
G428N. (cervix)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
..................................AGTTGGTCTTTTCTGTACA..................................................................................................................................................................................................... 191.000.00----------1.00---
.............................................................................................................................................................ATGGTTTCTCCCTCTTCTAGTT....................................................................... 220.500.00------0.50-------
.............................................................................................................................................................AGAAGAGGGAGAAACCAT........................................................................... 1820.500.50------0.50-------
...........................................................................................................................................................................................................TTGGTGAAAGGAAATC............................... 1670.140.14-------------0.14