ID: uc010ivv.1_intron_1_0_chr5_54422268_r.3p
GENE: (8)
chr5:54422218-54422467-


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(18)
CELL-LINE 		(1)
HEART 		(1)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TGCTTCTTTTTAACCAGAAAAATTAAGGGACTTTTTCCTATGAGCCTACATAACTGGTCTAAATATATATTGCTTTTAATCATAGCCATTCATTTTCATATTGTAGTTCTTAAGGTTAAGGTAGACTTAAGTTAGATAAATCCCAAAGACTGTTTTTTTTTTTTTTTTTTTTTGACATGGAATCTCACTCTGTCACCTAGGCTGGAGTTCAGTGGCGTGATCTCAGCTCACTGCAACCTCCACCTCCCGA
..............................................................................(((.(((((..........................))))).)))........((((((.(((....(((((........)))))....))).))))))..........................................................................
...........................................................................76...................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTAAG.............................................................................2514.000.0012.001.001.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAAAG..........................................................................2814.000.007.00-7.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCGG...........................................................................2713.000.009.004.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTAAG..........................................................................2813.000.009.00-4.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTAAAG.............................................................................2511.000.004.00-7.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTGG..........................................................................288.000.006.001.00-------------1.00-----------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTGG............................................................................267.000.006.001.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTGGG..........................................................................286.000.005.001.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCGG..............................................................................246.000.002.004.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCGG..........................................................................285.000.004.001.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCGG.............................................................................254.000.004.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAAAA..........................................................................283.000.002.00-1.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCAAG..........................................................................283.000.002.00-1.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAG............................................................................263.000.003.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTT.............................................................................252.000.00-2.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAC............................................................................262.000.002.00--------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTGG.......................................................................................172.000.00-------2.00-------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCAG..........................................................................282.000.001.00----------------------------1.00---
...........................................................................................................................................................................................................................ATCTCAGCTCACTGCAACCTCCACCTGGGG.302.000.002.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTGG.........................................................................292.000.002.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCGAG............................................................................262.000.001.001.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTAG..........................................................................282.000.00--2.00------------------------------
................................................................................................................................................................................ATGGAATCTCACTCTGTATCC.....................................................212.000.00---------2.00-----------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTAAAA.........................................................................291.000.00-1.00-------------------------------
......................................................................................................................................................................................................AGGCTGGAGTTCAGTGGCGGGG..............................221.000.00----------------------------1.00----
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTTTTTCTTG..........................................................................301.000.001.00--------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTCTC....................................................................................201.000.001.00--------------------------------
......................................................................................................................................................................................................AGGCTGGAGTTCAGTGATT.................................191.000.00----1.00----------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCCA............................................................................261.000.001.00--------------------------------
.......................................................................................................................................................................................................................CGTGATCTCAGCTCACGTT................191.000.00--------------1.00------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTTATAG.............................................................................271.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTATCT.........................................................................291.000.00--1.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTATC...........................................................................271.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTGGAC.........................................................................291.000.00-1.00-------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTACAG.................................................................................231.000.00-----1.00---------------------------
.....................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTCAAG..........................................................................271.000.001.00--------------------------------
......................................................................................................................................................TGTTTTTTTTTTTTTTTTTTTTTGACTCC.......................................................................291.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCT.............................................................................251.000.00--1.00------------------------------
........................................................................................................................................................................................................GCTGGAGTTCAGTGGCGG................................181.000.00-------------------1.00-------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTT...........................................................................271.000.00--1.00------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTCGG..................................................................................221.000.00-1.00-------------------------------
.................................................................................................................................................................................................................CAGTGGCGTGATCTCAGCTCTAG..................231.000.00-------------------------------1.00-
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTTG.........................................................................291.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTGGGCC........................................................................301.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTATC.............................................................................251.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCGAG.........................................................................291.000.001.00--------------------------------
.........................................................................................................................................................................................................................TGATCTCAGCTCACTGCAACCTCCACCTGGGG.321.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTTT.........................................................................291.000.001.00--------------------------------
.....................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTAGAG..........................................................................271.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTTT............................................................................261.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTAAGT.............................................................................251.000.00--1.00------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTATCC..........................................................................281.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTAAAC.........................................................................291.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTATC..............................................................................241.000.001.00--------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTCCGG...................................................................................211.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTATG..........................................................................281.000.00-1.00-------------------------------
.....................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTCCAG..........................................................................271.000.00--1.00------------------------------
.......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTGACGGG.......................................................................281.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTATCT............................................................................261.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCCGG.............................................................................251.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCAGT............................................................................261.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCAT.............................................................................251.000.00-1.00-------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTCTTT..............................................................................261.000.001.00--------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGACATGGACTAC.................................................................331.000.00-----1.00---------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCGGG.............................................................................251.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTACT..........................................................................281.000.001.00--------------------------------
..........................................................................................................................................................................................ACTCTGTCACCTAGGCTGGCGC..........................................221.000.00-1.00-------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTTC..................................................................................221.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCCGG..........................................................................281.000.001.00--------------------------------
................................................................................................................................................................................................TCACCTAGGCTGGAGTTTTT......................................201.000.00----1.00----------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTGCC.................................................................................231.000.00-1.00-------------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCACCTGGGC.251.000.001.00--------------------------------
......................................................................................................................................................TGTTTTTTTTTTTTTTTTTTTTTGACTGCC......................................................................301.000.00----------1.00----------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCCTT.........................................................................291.000.001.00--------------------------------
..................................................................................................................................................................................................ACCTAGGCTGGAGTTCAGTGGCAAGT..............................261.000.00------------------------1.00--------
..........................................................................................................................................................................................ACTCTGTCACCTAGGCTGGAGGCAG.......................................251.000.001.00--------------------------------
................................................................................CATAGCCATTCATTTTGCTT......................................................................................................................................................201.000.00--1.00------------------------------
...........................................................................................................................................................TTTTTTTTTTTTTTTTTTGACATGTTGG...................................................................281.000.00--1.00------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTTTATTT............................................................................281.000.00-1.00-------------------------------
..................................................................................................................................................................TTTTTTTTTTTGACATGGTTCC..................................................................221.000.00-1.00-------------------------------
.................................................................................................................................................AAGACTGTTTTTTTTTTTTTTTTTTTCC.............................................................................281.000.001.00--------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTCTAT................................................................................241.000.001.00--------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGACATGTCC....................................................................301.000.00----------1.00----------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTTG..........................................................................281.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCTG...........................................................................271.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTGT...........................................................................271.000.001.00--------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTCTCC................................................................................241.000.00-1.00-------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTCTCT.................................................................................231.000.00-1.00-------------------------------
..................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTCT................................................................................241.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTAT............................................................................261.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTGCCC.........................................................................291.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCAG...........................................................................271.000.00-----1.00---------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCT............................................................................261.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTCTT..........................................................................281.000.001.00--------------------------------
......................................................................................................................................................................................................AGGCTGGAGTTCAGTGGCGTGAGAT...........................251.000.00----------------1.00----------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTCGGG..........................................................................281.000.00-1.00-------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCTAG.............................................................................251.000.001.00--------------------------------
.......................................................................................................................................................................................................................CGTGATCTCAGCTCAGAC.................181.000.00---------------------------1.00-----
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTTTTACCT.........................................................................291.000.001.00--------------------------------
....................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCGG............................................................................261.000.001.00--------------------------------
................................................................................................................................................................................ATGGAATCTCACTCTGTCACT.....................................................211.000.00------------------------------1.00--
..................................................................................................................................................................TTTTTTTTTTTGACATGGGGCC..................................................................221.000.00-1.00-------------------------------
...................................................................................................................................................................................................CCTAGGCTGGAGTTCAGTGGCGTGATCTC..........................2960.170.17--------------------------------0.17
..................................................................................................................................................................................................ACCTAGGCTGGAGTTCAGTGGCGTG...............................2580.120.120.12--------------------------------
.................................................................................................................................................AAGACTGTTTTTTTTTTTTTTTTTTTTT.............................................................................2890.110.110.11--------------------------------

Antisense strand
TGCTTCTTTTTAACCAGAAAAATTAAGGGACTTTTTCCTATGAGCCTACATAACTGGTCTAAATATATATTGCTTTTAATCATAGCCATTCATTTTCATATTGTAGTTCTTAAGGTTAAGGTAGACTTAAGTTAGATAAATCCCAAAGACTGTTTTTTTTTTTTTTTTTTTTTGACATGGAATCTCACTCTGTCACCTAGGCTGGAGTTCAGTGGCGTGATCTCAGCTCACTGCAACCTCCACCTCCCGA
..............................................................................(((.(((((..........................))))).)))........((((((.(((....(((((........)))))....))).))))))..........................................................................
...........................................................................76...................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCACCTCCCGCTG 2810.000.00---5.00--3.00----1.00--------1.00------------
..................................................................................................................................GTTAGATAAATCCCAACATG.................................................................................................... 202.000.00----2.00----------------------------
.....................................................................................................................................................................................................................................ACTGCAACCTCCACCTCCCGTT 222.000.00-------------1.00-------1.00-----------
...................................................................................................................................................GACTGTTTTTTTTTTTTCGAC.................................................................................. 211.000.00----------------------1.00----------
....................................................................................................................................................AAAAAAAAAAAAAAAAAAACAGT............................................................................... 2301.001.00-----------------------1.00---------
......TTTTTAACCAGAAAAATGTA................................................................................................................................................................................................................................ 201.000.00------------------1.00--------------
....................................................................................................................................................AAAAAAAAAAAAAAAAACAGT................................................................................. 2101.001.00--------1.00------------------------
....................................................................................................................................................................................................CTAGGCTGGAGTTCAGTCGAG................................. 211.000.00-1.00-------------------------------
...........................................................................................................................................................................................................................ATCTCAGCTCACTGCAACCTCCACCAAA... 281.000.00--------------------------1.00------
.......................................................................................................................................................................................................GGCTGGAGTTCAGTGGCGTGATCTAGGG....................... 281.000.001.00--------------------------------
...................................................................................................................................................................................................................................TCACTGCAACCTCCACCTCCCGACCA 261.000.00-1.00-------------------------------
...................................................................................................................................................GACTGTTTTTTTTTTTTTTTTC................................................................................. 221.000.00--------1.00------------------------
........................................................................................................................................................................................................................................TCGGGAGGTGGAGGTTGC 1801.001.00-----------------1.00---------------
.....................................................................................................................................................CTGTTTTTTTTTTTTTTTTTTTTTGAGAGC....................................................................... 301.000.00-------------------------1.00-------
......................................................................................................................................................................................................AGGCTGGAGTTCAGTGGCGTGATTGGG......................... 271.000.00-1.00-------------------------------
....................................................................................................................................................................................AATCTCACTCTGTCACCTAGTCT............................................... 231.000.00------------1.00--------------------