ID: uc010itn.1_intron_1_0_chr5_7871037_f.5p
GENE: MTRR(2)
chr5:7870987-7871236+


(4)
B-CELL 		(1)
BRAIN 		(11)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(2)
HELA 		(6)
LIVER 		(4)
OTHER 		(5)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TGGTACATGGATTTTCTGCAGATCTTCACTGTATTAGTGAATCCGATAAGGTTAGAGCCGTTACAGTGGATTTTACCGTTTTGTGCTTTGAAGAATTTTGGTTGGGAAGTGATATTTATGAAACAAAAGGACACTAATACCACCACATAGTCTTTGTTTTTTAACAGAAATGTGTTTGTTCAATGGTATAGTAAGATATCACCAGCATTTTTTTAATATAGAAGTGTGTAGTTGAATTAGACTAAATGGT
..................................................................................................(((.(((..((((...(((........)))...))))....)))))).........................................................................................................
........................................................................................89......................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................AATTTTGGTTGGGAAAAA...........................................................................................................................................1827.000.001.002.00---3.002.002.002.001.00-1.002.002.00--2.00------1.001.00-----------1.001.00-------1.00-1.00--1.00--
.............................................................................................AATTTTGGTTGGGAAAAAA..........................................................................................................................................1919.000.00-2.003.00----1.00-1.00-1.00---2.00----1.001.00-------1.001.00--1.001.00-----1.00-----1.00----1.00-
.................................TTAGTGAATCCGATAAG........................................................................................................................................................................................................1713.003.00---1.00---------------------------1.00---------1.00-----------
............................................................................................................................AAAAGGACACTAATACCACCACATAGTC..................................................................................................2813.003.00---3.00-------------------------------------------------
.............................................................................................AATTTTGGTTGGGAAACAA..........................................................................................................................................192.000.00-1.001.00--------------------------------------------------
.............................................................................................AATTTTGGTTGGGAAATC...........................................................................................................................................182.000.00----2.00------------------------------------------------
...........................................................................................AGAATTTTGGTTGGGAAGAA...........................................................................................................................................201.000.00-------------------------------------------------1.00---
.............................................................................................................................AAAGGACACTAATACCACCAC........................................................................................................2111.001.00-----------------------------------1.00-----------------
......ATGGATTTTCTGCAGATCT.................................................................................................................................................................................................................................1911.001.00------1.00----------------------------------------------
.........................................................................................................................AACAAAAGGACACTAATATG.............................................................................................................201.000.00-------------------------------------------1.00---------
............................................................................................GAATTTTGGTTGGGACA.............................................................................................................................................171.000.00-------------------------1.00---------------------------
.......TGGATTTTCTGCAGATCTTCAC.............................................................................................................................................................................................................................2211.001.00--1.00--------------------------------------------------
....................GATCTTCACTGTATTAGTG...................................................................................................................................................................................................................1911.001.00-------------------1.00---------------------------------
.............................................................................................AATTTTGGTTGGGAAACA...........................................................................................................................................181.000.00----------------------------1.00------------------------
.............................................................................................AATTTTGGTTGGGAAAAAT..........................................................................................................................................191.000.00--------------1.00--------------------------------------
...........................................................................................AGAATTTTGGTTGGGTAA.............................................................................................................................................181.000.00--------------------------1.00--------------------------
.............................................................................................AATTTTGGTTGGGAAAT............................................................................................................................................171.000.00--------------------------------------1.00--------------
..............................................................................................ATTTTGGTTGGGAAGGATC.........................................................................................................................................191.000.00----1.00------------------------------------------------
................................ATTAGTGAATCCGATAAG........................................................................................................................................................................................................1811.001.00-----------------1.00-----------------------------------
..........................................................................................AAGAATTTTGGTTGGGA...............................................................................................................................................1711.001.00------------------1.00----------------------------------
.............................TGTATTAGTGAATCCGATAAGTATG....................................................................................................................................................................................................251.000.00------------------------------------------1.00----------
.............................................................................................AATTTTGGTTGGGAAGAA...........................................................................................................................................181.000.00----------------------1.00------------------------------
.............................................................................................AATTTTGGTTGGGAAAATC..........................................................................................................................................191.000.00----1.00------------------------------------------------
...........................................................................................AGAATTTTGGTTGGGTTT.............................................................................................................................................181.000.00---------------------------------------1.00-------------
...................................................................................TGCTTTGAAGAATTTTGG.....................................................................................................................................................1811.001.00------------------------------------------------1.00----
..........................................................................................AAGAATTTTGGTTGGGAA..............................................................................................................................................1811.001.00--------------1.00--------------------------------------
....ACATGGATTTTCTGCAAAA...................................................................................................................................................................................................................................191.000.00--------------------------------1.00--------------------
.......TGGATTTTCTGCAGATC..................................................................................................................................................................................................................................1720.500.50----------------------------------------------------0.50
...................................................................................................................TTATGAAACAAAAGGACA.....................................................................................................................1820.500.50-----------------0.50-----------------------------------
...........................................................................................AGAATTTTGGTTGGGA...............................................................................................................................................1670.140.14------------------0.14----------------------------------

Antisense strand
TGGTACATGGATTTTCTGCAGATCTTCACTGTATTAGTGAATCCGATAAGGTTAGAGCCGTTACAGTGGATTTTACCGTTTTGTGCTTTGAAGAATTTTGGTTGGGAAGTGATATTTATGAAACAAAAGGACACTAATACCACCACATAGTCTTTGTTTTTTAACAGAAATGTGTTTGTTCAATGGTATAGTAAGATATCACCAGCATTTTTTTAATATAGAAGTGTGTAGTTGAATTAGACTAAATGGT
..................................................................................................(((.(((..((((...(((........)))...))))....)))))).........................................................................................................
........................................................................................89......................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037943(GSM510481)
293DcrTN. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)		SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR189786SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
....................................................................................................................................................................................................TATCACCAGCATTTTTTAAC.................................. 2010.000.0010.00----------------------------------------------------
........................................................................................................................................................................................................ACCAGCATTTTTTTAATCTG.............................. 201.000.00----------1.00------------------------------------------
.....................................................................................................................................................................................................ATCACCAGCATTTTTCT.................................... 171.000.00--------------------------------------------1.00--------
...................................................................................................................................................................................................................TTTAATATAGAAGTGTTTG.................... 191.000.00----------1.00------------------------------------------
................................................AGGTTAGAGCCGTTACAGTGCTG................................................................................................................................................................................... 231.000.00---------------------------1.00-------------------------
..............................................................................................................................................AACAAAGACTATGTGG............................................................................................ 1660.170.17--------0.17--------------------------------------------